Wall clock time and date at job start Mon Mar 30 2020 01:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99749 * 2 1 4 4 H 1.48506 * 109.47006 * 270.00144 * 3 2 1 5 5 H 1.48495 * 109.47410 * 29.99779 * 3 2 1 6 6 H 1.48503 * 109.47291 * 150.00497 * 3 2 1 7 7 C 1.37877 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99696 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00008 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.87239 * 62.39295 * 9 7 2 11 11 C 1.55140 * 110.99045 * 298.54779 * 9 7 2 12 12 C 1.54321 * 103.01779 * 206.25331 * 11 9 7 13 13 N 1.47446 * 107.23249 * 22.28438 * 12 11 9 14 14 C 1.46901 * 110.99819 * 123.26030 * 13 12 11 15 15 C 1.52991 * 109.47599 * 75.64709 * 14 13 12 16 16 H 1.09004 * 109.47143 * 305.81897 * 15 14 13 17 17 C 1.52995 * 109.47430 * 185.82049 * 15 14 13 18 18 C 1.53003 * 109.47460 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.46828 * 59.99838 * 18 17 15 20 20 C 1.52998 * 109.47108 * 299.99945 * 19 18 17 21 21 C 1.52995 * 109.47020 * 60.00363 * 20 19 18 22 22 H 1.09004 * 109.47471 * 59.99770 * 21 20 19 23 23 O 1.42899 * 109.47271 * 179.97438 * 21 20 19 24 24 C 1.47843 * 108.56814 * 0.98597 * 13 12 11 25 25 H 0.97003 * 120.00116 * 0.02562 * 1 2 3 26 26 H 0.96702 * 114.00060 * 297.60294 * 10 9 7 27 27 H 1.09000 * 110.70582 * 87.87254 * 11 9 7 28 28 H 1.09001 * 110.70257 * 324.63531 * 11 9 7 29 29 H 1.08999 * 109.89010 * 262.87511 * 12 11 9 30 30 H 1.09001 * 109.88752 * 141.68492 * 12 11 9 31 31 H 1.09001 * 109.46905 * 315.64250 * 14 13 12 32 32 H 1.09008 * 109.46779 * 195.64518 * 14 13 12 33 33 H 1.09006 * 109.47410 * 59.99937 * 17 15 14 34 34 H 1.09006 * 109.47259 * 299.99716 * 17 15 14 35 35 H 1.08996 * 109.46760 * 300.00174 * 18 17 15 36 36 H 1.09003 * 109.47053 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.46439 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47176 * 60.00591 * 19 18 17 39 39 H 1.08994 * 109.47204 * 300.00047 * 20 19 18 40 40 H 1.08998 * 109.46706 * 180.02562 * 20 19 18 41 41 H 0.96703 * 114.00106 * 300.00560 * 23 21 20 42 42 H 1.09001 * 110.36900 * 94.73397 * 24 13 12 43 43 H 1.08994 * 110.37465 * 217.07113 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4602 -2.6304 -1.1835 11 6 0.3743 -2.6346 1.2721 12 6 0.2542 -4.1628 1.4504 13 7 1.3924 -4.7760 0.7416 14 6 2.1867 -5.6156 1.6484 15 6 1.4456 -6.9285 1.9084 16 1 0.4392 -6.7127 2.2673 17 6 2.2002 -7.7399 2.9633 18 6 1.4587 -9.0527 3.2237 19 6 1.3748 -9.8573 1.9251 20 6 0.6201 -9.0459 0.8702 21 6 1.3617 -7.7332 0.6098 22 1 2.3679 -7.9493 0.2507 23 8 0.6571 -6.9755 -0.3759 24 6 2.2187 -3.6984 0.1569 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2255 -1.9548 -1.2752 27 1 -0.6068 -2.1868 1.1137 28 1 0.8705 -2.1841 2.1317 29 1 -0.6835 -4.5138 1.0198 30 1 0.2966 -4.4169 2.5096 31 1 2.3371 -5.0903 2.5916 32 1 3.1539 -5.8283 1.1928 33 1 2.2596 -7.1668 3.8887 34 1 3.2066 -7.9558 2.6044 35 1 0.4525 -8.8365 3.5828 36 1 1.9961 -9.6305 3.9757 37 1 0.8469 -10.7927 2.1108 38 1 2.3810 -10.0735 1.5660 39 1 -0.3860 -8.8297 1.2293 40 1 0.5600 -9.6193 -0.0548 41 1 0.5661 -7.4256 -1.2270 42 1 3.0367 -3.4403 0.8295 43 1 2.6071 -4.0029 -0.8149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171533602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:32 Heat of formation + Delta-G solvation = -131.340310 kcal Electronic energy + Delta-G solvation = -22166.554407 eV Core-core repulsion = 19016.843906 eV Total energy + Delta-G solvation = -3149.710501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57562 -39.39218 -36.47133 -36.16274 -34.17099 -33.11850 -30.79215 -30.00756 -29.77473 -26.89932 -25.24048 -23.38851 -22.58308 -21.41293 -21.15698 -20.50013 -18.97993 -17.87863 -16.98908 -16.84689 -16.39151 -16.06171 -15.81350 -15.36775 -15.20854 -14.54910 -14.26385 -14.23057 -13.93433 -13.62731 -13.54428 -13.22638 -13.07500 -12.89575 -12.72983 -12.60923 -12.59240 -12.24006 -12.19779 -12.03754 -11.81935 -11.54140 -11.48578 -11.35185 -11.03144 -10.87725 -10.58580 -10.40560 -10.04528 -8.86053 -8.20569 -6.37254 1.39648 1.41208 1.50830 2.38040 3.03336 3.20319 3.52491 3.73150 3.89523 4.04757 4.10852 4.15604 4.22845 4.36442 4.39161 4.46256 4.51199 4.55802 4.57632 4.62489 4.72345 4.79259 4.87863 4.95837 5.00271 5.05269 5.11670 5.23567 5.28803 5.29930 5.33251 5.35023 5.41653 5.50694 5.55326 5.60017 5.81505 6.05565 6.33215 6.48001 6.69326 7.24456 7.34631 7.48471 8.84575 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041304 B = 0.004437 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.740624 B = 6308.537591 C = 6530.211726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.564 4.564 8 H 0.053 0.947 9 C 0.237 3.763 10 O -0.586 6.586 11 C -0.135 4.135 12 C 0.062 3.938 13 N -0.497 5.497 14 C 0.056 3.944 15 C -0.070 4.070 16 H 0.057 0.943 17 C -0.109 4.109 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.147 4.147 21 C 0.118 3.882 22 H 0.046 0.954 23 O -0.553 6.553 24 C 0.068 3.932 25 H 0.268 0.732 26 H 0.369 0.631 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.371 0.629 42 H 0.041 0.959 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 -17.649 5.695 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.170 4.170 3 Si 0.786 3.214 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.602 4.602 8 H 0.071 0.929 9 C 0.197 3.803 10 O -0.392 6.392 11 C -0.174 4.174 12 C -0.066 4.066 13 N -0.220 5.220 14 C -0.072 4.072 15 C -0.089 4.089 16 H 0.075 0.925 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.185 4.185 21 C 0.059 3.941 22 H 0.064 0.936 23 O -0.357 6.357 24 C -0.060 4.060 25 H 0.078 0.922 26 H 0.217 0.783 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.217 0.783 42 H 0.060 0.940 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.788 -17.960 5.713 19.052 hybrid contribution 0.140 1.891 0.167 1.903 sum 2.928 -16.070 5.880 17.360 Atomic orbital electron populations 1.69841 1.06910 1.28070 1.50225 1.25710 0.95818 1.02292 0.93209 0.85530 0.78683 0.78952 0.78262 1.20149 1.20452 1.19503 1.21852 0.93459 0.92337 1.52602 0.92893 1.19745 0.87423 0.91288 0.81854 1.86156 1.51254 1.56320 1.45517 1.23059 1.00689 0.94396 0.99268 1.22639 0.95108 0.93214 0.95657 1.63509 1.07799 1.19040 1.31679 1.22351 0.96542 0.94344 0.93956 1.21128 0.99240 0.93633 0.94904 0.92465 1.21529 0.99299 0.96183 0.97659 1.21544 1.00567 0.95500 0.97881 1.21484 1.00821 0.98240 0.94568 1.22256 0.99687 0.96300 1.00208 1.21650 0.94008 0.89780 0.88680 0.93607 1.86960 1.78520 1.45935 1.24324 1.22795 0.94724 0.90416 0.98024 0.92245 0.78313 0.92791 0.94092 0.92763 0.93351 0.95563 0.91420 0.91354 0.90988 0.92450 0.90200 0.90728 0.91277 0.92608 0.90944 0.78303 0.94045 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.54 10.75 21.45 0.23 -50.30 16 2 C 0.03 1.66 5.29 84.66 0.45 2.11 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.56 -31.71 8.27 25.60 0.21 -31.50 16 8 H 0.05 2.95 7.79 -2.91 -0.02 2.93 16 9 C 0.24 12.52 0.87 -10.16 -0.01 12.51 16 10 O -0.59 -32.84 13.16 -148.98 -1.96 -34.80 16 11 C -0.13 -6.68 5.38 31.78 0.17 -6.51 16 12 C 0.06 2.62 6.22 86.65 0.54 3.16 16 13 N -0.50 -20.21 3.29 -885.55 -2.92 -23.13 16 14 C 0.06 1.83 3.96 86.30 0.34 2.17 16 15 C -0.07 -1.85 2.07 -10.80 -0.02 -1.88 16 16 H 0.06 1.72 7.46 -2.38 -0.02 1.70 16 17 C -0.11 -2.11 5.20 30.59 0.16 -1.96 16 18 C -0.12 -1.87 5.92 30.60 0.18 -1.69 16 19 C -0.11 -1.73 5.92 30.59 0.18 -1.54 16 20 C -0.15 -2.82 5.54 30.59 0.17 -2.65 16 21 C 0.12 2.94 2.90 30.59 0.09 3.02 16 22 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 23 O -0.55 -17.23 11.43 -148.98 -1.70 -18.94 16 24 C 0.07 3.17 5.81 86.77 0.50 3.67 16 25 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.37 20.92 7.56 -74.06 -0.56 20.36 16 27 H 0.05 2.85 7.54 -2.39 -0.02 2.83 16 28 H 0.04 2.06 8.03 -2.39 -0.02 2.04 16 29 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.05 1.84 7.20 -2.39 -0.02 1.82 16 31 H 0.03 0.85 7.78 -2.39 -0.02 0.84 16 32 H 0.07 2.11 7.99 -2.38 -0.02 2.09 16 33 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.37 8.77 9.08 -74.06 -0.67 8.09 16 42 H 0.04 1.87 7.70 -2.39 -0.02 1.85 16 43 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -62.79 328.84 -1.61 -64.40 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: -0.25 Total: 38.58 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 2.96 Total: -21.08 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -2.68 Total: -73.44 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -3.66 Total: -53.74 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -62.79 -1.61 -64.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171533602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.941 kcal (2) G-P(sol) polarization free energy of solvation -62.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds