Wall clock time and date at job start Mon Mar 30 2020 01:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47008 * 2 1 4 4 C 1.53001 * 109.47080 * 119.99971 * 2 1 3 5 5 C 1.53000 * 109.47188 * 185.00337 * 4 2 1 6 6 C 1.50699 * 109.47346 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99970 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99801 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99831 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00368 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46875 * 90.00078 * 10 8 6 12 12 H 1.48500 * 109.46994 * 210.00062 * 10 8 6 13 13 H 1.48501 * 109.46809 * 329.99894 * 10 8 6 14 14 N 1.46896 * 109.47375 * 240.00050 * 2 1 3 15 15 C 1.46898 * 111.00255 * 84.99700 * 14 2 1 16 16 C 1.50701 * 109.47287 * 180.02562 * 15 14 2 17 17 C 1.39872 * 125.89724 * 95.00139 * 16 15 14 18 18 C 1.35317 * 107.92021 * 179.97438 * 17 16 15 19 19 N 1.34940 * 107.74438 * 0.23195 * 18 17 16 20 20 C 1.46503 * 126.03757 * 179.77616 * 19 18 17 21 21 C 1.53000 * 109.47420 * 124.99460 * 20 19 18 22 22 F 1.39900 * 109.46833 * 179.97438 * 21 20 19 23 23 N 1.30838 * 125.89963 * 274.96013 * 16 15 14 24 24 H 1.08997 * 109.46930 * 300.00104 * 1 2 3 25 25 H 1.08995 * 109.46978 * 59.99973 * 1 2 3 26 26 H 1.09002 * 109.47008 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47288 * 304.99977 * 4 2 1 28 28 H 1.08997 * 109.47100 * 65.00180 * 4 2 1 29 29 H 1.09001 * 109.47043 * 300.00011 * 5 4 2 30 30 H 1.09005 * 109.47110 * 59.99617 * 5 4 2 31 31 H 0.96995 * 119.99982 * 179.97438 * 9 8 6 32 32 H 1.00905 * 110.99790 * 321.04561 * 14 2 1 33 33 H 1.08998 * 109.47134 * 60.00283 * 15 14 2 34 34 H 1.09002 * 109.46728 * 300.00426 * 15 14 2 35 35 H 1.08004 * 126.03876 * 359.94518 * 17 16 15 36 36 H 1.08002 * 126.12447 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.46694 * 244.99620 * 20 19 18 38 38 H 1.08999 * 109.47197 * 4.98730 * 20 19 18 39 39 H 1.08996 * 109.47042 * 299.99805 * 21 20 19 40 40 H 1.09000 * 109.47085 * 59.99765 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3242 2.5439 7 1 3.3688 -1.8046 3.2130 8 6 5.4186 -1.3612 2.8151 9 7 5.8570 -1.9812 3.8889 10 14 6.6267 -0.5308 1.6574 11 1 6.8324 0.8769 2.0831 12 1 7.9235 -1.2535 1.6936 13 1 6.0846 -0.5558 0.2751 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3469 16 6 2.5874 -0.5218 -3.5560 17 6 1.7947 -1.1167 -4.5429 18 6 2.6194 -1.6821 -5.4547 19 7 3.8889 -1.4575 -5.0560 20 6 5.1011 -1.9008 -5.7490 21 6 6.0032 -0.6952 -6.0205 22 9 7.1610 -1.1187 -6.6818 23 7 3.8430 -0.7226 -3.8642 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2617 2.1371 28 1 1.7517 -1.7715 1.2056 29 1 3.9995 -1.0727 0.4260 30 1 3.8532 0.4371 1.3574 31 1 6.8077 -2.0076 4.0795 32 1 1.4496 -1.4979 -1.4100 33 1 2.7589 1.0462 -2.1182 34 1 1.0870 0.6162 -2.5524 35 1 0.7151 -1.1240 -4.5719 36 1 2.3159 -2.2205 -6.3403 37 1 5.6333 -2.6198 -5.1262 38 1 4.8282 -2.3706 -6.6939 39 1 5.4710 0.0238 -6.6433 40 1 6.2760 -0.2254 -5.0756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488837.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:04 Heat of formation + Delta-G solvation = 15.127384 kcal Electronic energy + Delta-G solvation = -20151.877804 eV Core-core repulsion = 16917.351065 eV Total energy + Delta-G solvation = -3234.526740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.160 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.04623 -41.29849 -37.35077 -34.63170 -33.12218 -31.73663 -30.32892 -29.56130 -28.56318 -25.72008 -24.92201 -23.14841 -21.31319 -20.99296 -20.09823 -19.47996 -17.53958 -16.71155 -16.49860 -16.00480 -15.64963 -15.22883 -15.01959 -14.42022 -14.09068 -13.94850 -13.77191 -13.49002 -13.06777 -12.71470 -12.62345 -12.40908 -12.29313 -11.91799 -11.76453 -11.45418 -11.27980 -11.25570 -10.80315 -10.57174 -10.41777 -9.75140 -9.57666 -9.43684 -9.36967 -8.94136 -8.72934 -8.36664 -7.97615 -5.88717 -3.84308 1.74810 2.22387 2.67794 3.44472 3.51440 3.63485 3.89506 4.22795 4.49595 4.54705 4.59299 4.62694 4.73061 4.84163 5.03646 5.20563 5.28665 5.41001 5.47587 5.50220 5.54190 5.62359 5.64133 5.71924 5.96181 6.06941 6.24099 6.32533 6.52296 6.58988 6.77378 6.82265 7.16774 7.35822 7.59453 7.63871 7.74590 7.83715 8.01341 8.71869 9.17674 9.76193 11.25147 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.005156 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.364192 B = 5429.317812 C = 7261.638149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 H 0.073 0.927 4 C -0.089 4.089 5 C -0.007 4.007 6 C -0.515 4.515 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.911 5.911 10 Si 0.877 3.123 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.258 1.258 14 N -0.668 5.668 15 C 0.139 3.861 16 C 0.086 3.914 17 C -0.265 4.265 18 C 0.052 3.948 19 N -0.380 5.380 20 C 0.108 3.892 21 C 0.052 3.948 22 F -0.209 7.209 23 N -0.268 5.268 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.002 0.998 31 H 0.260 0.740 32 H 0.339 0.661 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.146 0.854 36 H 0.172 0.828 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 2.966 -23.173 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.092 0.908 4 C -0.127 4.127 5 C -0.045 4.045 6 C -0.553 4.553 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.551 5.551 10 Si 0.704 3.296 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.182 1.182 14 N -0.299 5.299 15 C 0.008 3.992 16 C -0.082 4.082 17 C -0.295 4.295 18 C -0.093 4.093 19 N -0.162 5.162 20 C -0.015 4.015 21 C -0.004 4.004 22 F -0.190 7.190 23 N -0.089 5.089 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.157 0.843 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.164 0.836 36 H 0.189 0.811 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.492 3.136 -22.688 23.806 hybrid contribution -1.001 0.159 -1.059 1.466 sum -7.493 3.294 -23.747 25.118 Atomic orbital electron populations 1.22526 0.98186 1.01785 1.01446 1.21791 0.91340 0.98350 0.91252 0.90827 1.21446 0.98989 0.99034 0.93248 1.19481 0.91531 0.95838 0.97611 1.21273 0.92785 1.33832 1.07446 0.91441 1.25013 0.98444 0.95112 0.95024 1.69936 1.14353 1.44259 1.26561 0.86802 0.80388 0.79402 0.82986 1.20657 1.21796 1.18248 1.60477 1.58108 1.08935 1.02382 1.20250 0.98726 0.94298 0.85957 1.22297 0.90467 0.98730 0.96747 1.21415 1.00448 1.09707 0.97942 1.22494 0.84191 1.01782 1.00824 1.48450 1.04961 1.43663 1.19167 1.22149 0.84306 0.97274 0.97771 1.22182 0.82887 0.96414 0.98891 1.92792 1.51371 1.91833 1.83044 1.77496 1.20367 1.13728 0.97351 0.92051 0.93566 0.92596 0.92837 0.92885 0.94932 0.97956 0.93044 0.84255 0.89706 0.93574 0.83602 0.81064 0.88430 0.87679 0.90247 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.16 37.16 0.34 -1.89 16 2 C 0.08 1.29 2.59 -67.71 -0.18 1.12 16 3 H 0.07 1.17 7.80 -51.93 -0.40 0.77 16 4 C -0.09 -1.80 4.83 -26.73 -0.13 -1.93 16 5 C -0.01 -0.18 3.93 -27.88 -0.11 -0.29 16 6 C -0.52 -15.44 9.66 -34.44 -0.33 -15.77 16 7 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 8 C 0.06 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.91 -29.41 13.96 55.43 0.77 -28.64 16 10 Si 0.88 23.26 27.47 -169.99 -4.67 18.59 16 11 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 13 H -0.26 -6.77 6.54 56.52 0.37 -6.41 16 14 N -0.67 -10.42 5.69 -107.99 -0.61 -11.04 16 15 C 0.14 1.86 6.04 -4.98 -0.03 1.83 16 16 C 0.09 1.18 6.73 -82.40 -0.55 0.62 16 17 C -0.27 -2.88 10.74 -40.01 -0.43 -3.31 16 18 C 0.05 0.49 11.45 -17.23 -0.20 0.30 16 19 N -0.38 -4.36 3.68 -61.36 -0.23 -4.58 16 20 C 0.11 0.92 6.96 -4.04 -0.03 0.89 16 21 C 0.05 0.46 7.74 37.16 0.29 0.75 16 22 F -0.21 -2.16 17.36 2.25 0.04 -2.12 16 23 N -0.27 -4.09 12.42 33.67 0.42 -3.67 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.49 7.45 -51.93 -0.39 0.11 16 26 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.03 0.86 6.81 -51.93 -0.35 0.51 16 30 H 0.00 0.05 7.57 -51.93 -0.39 -0.34 16 31 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 32 H 0.34 4.88 8.46 -39.29 -0.33 4.55 16 33 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 34 H 0.05 0.51 7.44 -51.93 -0.39 0.12 16 35 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -35.30 337.67 -7.13 -42.43 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.49 Total: -0.23 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -1.46 Total: -15.83 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.35 Total: -47.93 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.67 Total: 18.59 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.30 -7.13 -42.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488837.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.557 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds