Wall clock time and date at job start Mon Mar 30 2020 01:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47008 * 2 1 4 4 C 1.53001 * 109.47080 * 119.99971 * 2 1 3 5 5 C 1.53000 * 109.47188 * 185.00337 * 4 2 1 6 6 C 1.50699 * 109.47346 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99970 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99801 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99831 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00368 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46875 * 90.00078 * 10 8 6 12 12 H 1.48500 * 109.46994 * 210.00062 * 10 8 6 13 13 H 1.48501 * 109.46809 * 329.99894 * 10 8 6 14 14 N 1.46896 * 109.47375 * 240.00050 * 2 1 3 15 15 C 1.46898 * 111.00255 * 84.99700 * 14 2 1 16 16 C 1.50701 * 109.47287 * 180.02562 * 15 14 2 17 17 C 1.39872 * 125.89724 * 95.00139 * 16 15 14 18 18 C 1.35317 * 107.92021 * 179.97438 * 17 16 15 19 19 N 1.34940 * 107.74438 * 0.23195 * 18 17 16 20 20 C 1.46503 * 126.03757 * 179.77616 * 19 18 17 21 21 C 1.53000 * 109.47420 * 124.99460 * 20 19 18 22 22 F 1.39900 * 109.46833 * 179.97438 * 21 20 19 23 23 N 1.30838 * 125.89963 * 274.96013 * 16 15 14 24 24 H 1.08997 * 109.46930 * 300.00104 * 1 2 3 25 25 H 1.08995 * 109.46978 * 59.99973 * 1 2 3 26 26 H 1.09002 * 109.47008 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47288 * 304.99977 * 4 2 1 28 28 H 1.08997 * 109.47100 * 65.00180 * 4 2 1 29 29 H 1.09001 * 109.47043 * 300.00011 * 5 4 2 30 30 H 1.09005 * 109.47110 * 59.99617 * 5 4 2 31 31 H 0.96995 * 119.99982 * 179.97438 * 9 8 6 32 32 H 1.00905 * 110.99790 * 321.04561 * 14 2 1 33 33 H 1.08998 * 109.47134 * 60.00283 * 15 14 2 34 34 H 1.09002 * 109.46728 * 300.00426 * 15 14 2 35 35 H 1.08004 * 126.03876 * 359.94518 * 17 16 15 36 36 H 1.08002 * 126.12447 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.46694 * 244.99620 * 20 19 18 38 38 H 1.08999 * 109.47197 * 4.98730 * 20 19 18 39 39 H 1.08996 * 109.47042 * 299.99805 * 21 20 19 40 40 H 1.09000 * 109.47085 * 59.99765 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3242 2.5439 7 1 3.3688 -1.8046 3.2130 8 6 5.4186 -1.3612 2.8151 9 7 5.8570 -1.9812 3.8889 10 14 6.6267 -0.5308 1.6574 11 1 6.8324 0.8769 2.0831 12 1 7.9235 -1.2535 1.6936 13 1 6.0846 -0.5558 0.2751 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3469 16 6 2.5874 -0.5218 -3.5560 17 6 1.7947 -1.1167 -4.5429 18 6 2.6194 -1.6821 -5.4547 19 7 3.8889 -1.4575 -5.0560 20 6 5.1011 -1.9008 -5.7490 21 6 6.0032 -0.6952 -6.0205 22 9 7.1610 -1.1187 -6.6818 23 7 3.8430 -0.7226 -3.8642 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2617 2.1371 28 1 1.7517 -1.7715 1.2056 29 1 3.9995 -1.0727 0.4260 30 1 3.8532 0.4371 1.3574 31 1 6.8077 -2.0076 4.0795 32 1 1.4496 -1.4979 -1.4100 33 1 2.7589 1.0462 -2.1182 34 1 1.0870 0.6162 -2.5524 35 1 0.7151 -1.1240 -4.5719 36 1 2.3159 -2.2205 -6.3403 37 1 5.6333 -2.6198 -5.1262 38 1 4.8282 -2.3706 -6.6939 39 1 5.4710 0.0238 -6.6433 40 1 6.2760 -0.2254 -5.0756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488837.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:04 Heat of formation + Delta-G solvation = -9.157730 kcal Electronic energy + Delta-G solvation = -20152.930886 eV Core-core repulsion = 16917.351065 eV Total energy + Delta-G solvation = -3235.579821 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.160 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.81382 -42.12047 -38.60380 -35.70327 -34.96589 -33.28724 -31.53391 -30.77203 -29.47607 -27.15252 -26.32989 -23.94006 -22.78156 -22.05340 -21.49201 -20.55315 -18.83468 -18.28007 -17.43263 -16.80737 -16.66582 -16.34844 -16.27370 -15.90365 -15.36977 -15.07055 -14.72589 -14.51850 -14.45586 -14.19940 -13.89957 -13.61868 -13.51927 -13.18174 -13.04943 -12.87001 -12.51470 -12.42174 -12.04119 -12.00279 -11.67946 -11.47741 -11.41325 -11.32765 -11.10640 -10.73156 -10.29294 -9.52998 -9.12179 -8.28323 -6.29115 0.94684 1.31569 1.34936 1.49802 1.51112 1.82616 2.37083 3.08242 3.20499 3.45823 3.60263 3.78588 3.92288 3.98522 4.06455 4.17497 4.23131 4.35947 4.43778 4.49752 4.65014 4.70881 4.77796 4.83982 4.88234 4.95553 5.04528 5.07258 5.19156 5.29333 5.41545 5.61263 5.66856 5.70986 5.79052 6.14270 6.25293 6.34141 6.60577 6.79685 6.82132 7.35272 8.88851 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.005156 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.364192 B = 5429.317812 C = 7261.638149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.072 0.928 4 C -0.084 4.084 5 C 0.001 3.999 6 C -0.527 4.527 7 H 0.032 0.968 8 C 0.006 3.994 9 N -0.954 5.954 10 Si 0.947 3.053 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.256 1.256 14 N -0.690 5.690 15 C 0.144 3.856 16 C 0.068 3.932 17 C -0.277 4.277 18 C 0.065 3.935 19 N -0.383 5.383 20 C 0.105 3.895 21 C 0.057 3.943 22 F -0.217 7.217 23 N -0.327 5.327 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.020 0.980 30 H 0.003 0.997 31 H 0.264 0.736 32 H 0.345 0.655 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.169 0.831 36 H 0.218 0.782 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.095 0.905 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.921 3.485 -26.165 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 H 0.091 0.909 4 C -0.122 4.122 5 C -0.036 4.036 6 C -0.565 4.565 7 H 0.050 0.950 8 C -0.191 4.191 9 N -0.596 5.596 10 Si 0.771 3.229 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.180 1.180 14 N -0.323 5.323 15 C 0.013 3.987 16 C -0.099 4.099 17 C -0.306 4.306 18 C -0.080 4.080 19 N -0.166 5.166 20 C -0.017 4.017 21 C 0.001 3.999 22 F -0.199 7.199 23 N -0.150 5.150 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.022 0.978 31 H 0.073 0.927 32 H 0.164 0.836 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.186 0.814 36 H 0.235 0.765 37 H 0.105 0.895 38 H 0.164 0.836 39 H 0.114 0.886 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.735 3.663 -25.679 27.068 hybrid contribution -0.630 -0.080 -0.110 0.644 sum -8.364 3.583 -25.789 27.347 Atomic orbital electron populations 1.22386 0.95037 1.02522 1.02847 1.21549 0.93714 0.97240 0.89297 0.90949 1.21343 0.95551 0.99300 0.96045 1.19356 0.94986 0.94753 0.94505 1.21676 0.92559 1.33740 1.08549 0.95005 1.25925 1.00564 0.95875 0.96686 1.70072 1.15086 1.45895 1.28523 0.85699 0.77794 0.78868 0.80523 1.19109 1.21084 1.18004 1.60328 1.58886 1.09883 1.03167 1.20210 0.99803 0.93363 0.85281 1.22469 0.90784 0.99240 0.97368 1.21729 1.01659 1.09735 0.97471 1.23239 0.82957 1.00325 1.01438 1.48632 1.06466 1.43111 1.18372 1.22347 0.83588 0.96719 0.99027 1.22128 0.82694 0.97009 0.98058 1.92774 1.52036 1.91957 1.83089 1.77397 1.21699 1.16077 0.99836 0.91713 0.91067 0.92214 0.92959 0.93801 0.96140 0.97820 0.92687 0.83600 0.91496 0.90650 0.81380 0.76547 0.89494 0.83634 0.88650 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.74 9.16 71.98 0.66 -3.08 16 2 C 0.09 2.77 2.59 44.92 0.12 2.88 16 3 H 0.07 2.21 7.80 -2.39 -0.02 2.19 16 4 C -0.08 -3.41 4.83 30.59 0.15 -3.26 16 5 C 0.00 0.07 3.93 29.85 0.12 0.19 16 6 C -0.53 -32.51 9.66 25.60 0.25 -32.26 16 7 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 8 C 0.01 0.34 5.47 84.65 0.46 0.81 16 9 N -0.95 -63.03 13.96 21.45 0.30 -62.73 16 10 Si 0.95 48.77 27.47 68.60 1.88 50.65 16 11 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 13 H -0.26 -13.00 6.54 99.48 0.65 -12.35 16 14 N -0.69 -20.81 5.69 -495.58 -2.82 -23.63 16 15 C 0.14 3.66 6.04 85.56 0.52 4.18 16 16 C 0.07 1.78 6.73 43.10 0.29 2.07 16 17 C -0.28 -5.22 10.74 21.99 0.24 -4.98 16 18 C 0.07 1.01 11.45 83.54 0.96 1.97 16 19 N -0.38 -8.03 3.68 -348.05 -1.28 -9.31 16 20 C 0.10 1.58 6.96 86.38 0.60 2.18 16 21 C 0.06 0.95 7.74 71.98 0.56 1.51 16 22 F -0.22 -4.26 17.36 44.97 0.78 -3.48 16 23 N -0.33 -9.81 12.42 -47.38 -0.59 -10.40 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.25 7.45 -2.39 -0.02 1.23 16 26 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 27 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.02 1.08 6.81 -2.39 -0.02 1.07 16 30 H 0.00 0.17 7.57 -2.38 -0.02 0.16 16 31 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 32 H 0.35 9.47 8.46 -89.69 -0.76 8.71 16 33 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 34 H 0.08 1.44 7.44 -2.39 -0.02 1.42 16 35 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.15 0.97 8.07 -2.39 -0.02 0.95 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -78.98 337.67 3.39 -75.59 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.20 Total: 11.10 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 4.91 Total: -27.79 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.39 Total: -106.07 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.48 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 1.88 Total: 50.65 kcal Total: -78.98 3.39 -75.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488837.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.435 kcal (2) G-P(sol) polarization free energy of solvation -78.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds