Wall clock time and date at job start Mon Mar 30 2020 01:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47299 * 2 1 4 4 C 1.53002 * 109.47425 * 239.99813 * 2 1 3 5 5 C 1.53001 * 109.47499 * 174.99773 * 4 2 1 6 6 C 1.50693 * 109.47260 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00373 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00336 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99773 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47267 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47082 * 120.00101 * 10 8 6 13 13 H 1.48506 * 109.47101 * 239.99972 * 10 8 6 14 14 N 1.46897 * 109.47358 * 119.99525 * 2 1 3 15 15 C 1.46900 * 111.00116 * 275.00339 * 14 2 1 16 16 C 1.50709 * 109.47147 * 179.97438 * 15 14 2 17 17 C 1.35311 * 126.12584 * 95.02056 * 16 15 14 18 18 C 1.39876 * 107.91749 * 179.97438 * 17 16 15 19 19 N 1.30834 * 108.20073 * 0.27043 * 18 17 16 20 20 N 1.34947 * 126.12387 * 274.98485 * 16 15 14 21 21 C 1.46500 * 126.04040 * 0.03254 * 20 16 15 22 22 C 1.52992 * 109.47291 * 90.00121 * 21 20 16 23 23 F 1.39904 * 109.47446 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.46860 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46798 * 300.00417 * 1 2 3 26 26 H 1.09002 * 109.46845 * 60.00333 * 1 2 3 27 27 H 1.09002 * 109.46671 * 294.99872 * 4 2 1 28 28 H 1.09004 * 109.47042 * 54.99988 * 4 2 1 29 29 H 1.09001 * 109.47245 * 300.00716 * 5 4 2 30 30 H 1.09004 * 109.46799 * 60.00065 * 5 4 2 31 31 H 0.96991 * 120.00236 * 179.97438 * 9 8 6 32 32 H 1.00904 * 111.00588 * 151.04817 * 14 2 1 33 33 H 1.08995 * 109.47323 * 60.00176 * 15 14 2 34 34 H 1.08994 * 109.47031 * 299.99417 * 15 14 2 35 35 H 1.07992 * 126.04231 * 359.94661 * 17 16 15 36 36 H 1.08002 * 125.89548 * 179.97438 * 18 17 16 37 37 H 1.08996 * 109.47009 * 210.00717 * 21 20 16 38 38 H 1.09011 * 109.46832 * 330.00309 * 21 20 16 39 39 H 1.09004 * 109.47306 * 300.00297 * 22 21 20 40 40 H 1.08999 * 109.47288 * 60.00008 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0673 -1.3242 -2.5437 7 1 3.3689 -1.8047 -3.2129 8 6 5.4186 -1.3604 -2.8155 9 7 6.2691 -0.7750 -2.0010 10 14 6.0412 -2.2411 -4.3406 11 1 4.8913 -2.8126 -5.0864 12 1 6.7636 -1.2769 -5.2088 13 1 6.9638 -3.3335 -3.9395 14 7 2.0197 -0.6924 1.1995 15 6 2.0825 0.2228 2.3469 16 6 2.5874 -0.5216 3.5561 17 6 3.8704 -0.5731 3.9829 18 6 3.9093 -1.3658 5.1346 19 7 2.6942 -1.7803 5.3867 20 7 1.8408 -1.2556 4.4075 21 6 0.3944 -1.4709 4.3198 22 6 0.1144 -2.7162 3.4763 23 9 -1.2669 -2.9215 3.3920 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7716 -1.2054 28 1 1.6055 -0.2618 -2.1370 29 1 3.8533 0.4370 -1.3573 30 1 3.9995 -1.0728 -0.4259 31 1 7.2196 -0.8007 -2.1920 32 1 2.9174 -1.1204 1.0288 33 1 1.0871 0.6164 2.5525 34 1 2.7588 1.0463 2.1182 35 1 4.7151 -0.0882 3.5165 36 1 4.7910 -1.5997 5.7129 37 1 -0.0135 -1.6107 5.3208 38 1 -0.0744 -0.6038 3.8543 39 1 0.5223 -2.5763 2.4752 40 1 0.5832 -3.5832 3.9417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:06 Heat of formation + Delta-G solvation = 7.220027 kcal Electronic energy + Delta-G solvation = -20743.214732 eV Core-core repulsion = 17508.345103 eV Total energy + Delta-G solvation = -3234.869628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.160 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.77196 -41.23180 -37.31923 -34.23124 -33.48196 -32.23076 -29.85124 -28.94104 -28.72275 -25.57216 -24.47524 -23.69301 -21.46159 -21.08827 -19.82065 -19.51051 -17.18668 -16.38366 -16.28083 -16.03894 -15.53316 -15.14538 -14.86517 -14.55282 -14.13356 -13.98982 -13.83191 -13.39960 -12.85934 -12.62364 -12.60250 -12.38492 -11.97757 -11.72030 -11.63066 -11.44445 -11.12795 -10.97551 -10.94958 -10.66836 -10.50227 -10.35726 -9.83789 -9.36315 -9.30062 -9.07490 -8.54266 -8.40341 -8.18917 -6.04616 -4.06689 1.80988 2.39364 2.87825 3.28627 3.36593 3.40563 4.28961 4.34696 4.42957 4.47500 4.72644 4.85242 4.95085 5.03035 5.13899 5.29871 5.32024 5.43402 5.50328 5.66617 5.71908 5.77347 5.80382 5.82930 6.06657 6.19670 6.25482 6.41606 6.43502 6.68469 6.81422 6.97283 7.00046 7.29011 7.54069 7.68837 7.72524 7.76090 7.94349 8.37796 9.00096 9.58034 11.06595 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.018122 B = 0.004570 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.725538 B = 6125.098907 C = 6863.447713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.042 0.958 4 C -0.114 4.114 5 C 0.020 3.980 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.684 5.684 15 C 0.116 3.884 16 C 0.099 3.901 17 C -0.264 4.264 18 C 0.050 3.950 19 N -0.302 5.302 20 N -0.363 5.363 21 C 0.112 3.888 22 C 0.044 3.956 23 F -0.211 7.211 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.013 0.987 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.359 0.641 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.150 0.850 36 H 0.183 0.817 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 1.590 12.496 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 H 0.060 0.940 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.074 0.926 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.320 5.320 15 C -0.015 4.015 16 C -0.028 4.028 17 C -0.294 4.294 18 C -0.136 4.136 19 N -0.123 5.123 20 N -0.147 5.147 21 C -0.011 4.011 22 C -0.012 4.012 23 F -0.192 7.192 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.182 0.818 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.167 0.833 36 H 0.200 0.800 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.325 0.660 13.449 17.595 hybrid contribution 1.810 0.526 -1.556 2.444 sum -9.515 1.187 11.893 15.277 Atomic orbital electron populations 1.21812 0.95589 1.01812 1.00330 1.21639 0.94486 0.96314 0.90188 0.94012 1.21834 0.99772 0.99443 0.94173 1.19132 0.88654 0.96904 0.97001 1.21255 0.91965 1.34251 1.08321 0.92643 1.25012 0.97093 0.95562 0.96683 1.69955 1.02355 1.44097 1.37011 0.86561 0.78882 0.79504 0.83213 1.19739 1.21046 1.20991 1.60668 1.35398 1.31890 1.04086 1.20539 1.00610 0.93338 0.86965 1.21056 0.91750 0.96318 0.93725 1.21378 0.96512 1.10310 1.01191 1.23827 0.95593 0.96987 0.97150 1.77334 1.01219 1.21580 1.12133 1.48244 1.06745 1.38717 1.20953 1.22041 0.76638 0.99744 1.02688 1.22416 0.76839 0.98290 1.03638 1.92767 1.32523 1.96126 1.97824 0.92315 0.93906 0.92742 0.92447 0.92547 0.96906 0.96636 0.93051 0.81840 0.90401 0.92210 0.83268 0.80007 0.88316 0.88097 0.87980 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.42 37.16 0.35 -1.44 16 2 C 0.08 1.28 2.65 -67.71 -0.18 1.10 16 3 H 0.04 0.67 7.80 -51.93 -0.40 0.26 16 4 C -0.11 -2.20 4.74 -26.73 -0.13 -2.33 16 5 C 0.02 0.49 4.80 -27.89 -0.13 0.36 16 6 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 7 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 10 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 N -0.68 -10.11 6.19 -107.99 -0.67 -10.78 16 15 C 0.12 1.48 5.65 -4.97 -0.03 1.45 16 16 C 0.10 1.32 6.44 -82.26 -0.53 0.79 16 17 C -0.26 -3.57 10.72 -40.01 -0.43 -4.00 16 18 C 0.05 0.64 12.03 -17.36 -0.21 0.44 16 19 N -0.30 -4.26 12.58 30.63 0.39 -3.88 16 20 N -0.36 -4.73 3.61 -57.14 -0.21 -4.93 16 21 C 0.11 1.18 6.70 -4.05 -0.03 1.15 16 22 C 0.04 0.50 7.88 37.15 0.29 0.79 16 23 F -0.21 -2.58 17.36 2.25 0.04 -2.54 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.49 7.45 -51.93 -0.39 0.10 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.39 6.43 -51.93 -0.33 0.06 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.36 6.21 6.46 -39.29 -0.25 5.96 16 33 H 0.08 0.87 6.53 -51.93 -0.34 0.53 16 34 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 0.93 7.15 -51.92 -0.37 0.55 16 39 H 0.10 1.28 8.03 -51.93 -0.42 0.86 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -30.05 336.54 -7.37 -37.42 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.27 Total: 3.54 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -1.43 Total: -14.78 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.25 Total: -45.06 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.05 -7.37 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.636 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds