Wall clock time and date at job start Mon Mar 30 2020 01:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47299 * 2 1 4 4 C 1.53002 * 109.47425 * 239.99813 * 2 1 3 5 5 C 1.53001 * 109.47499 * 174.99773 * 4 2 1 6 6 C 1.50693 * 109.47260 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00373 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00336 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99773 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47267 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47082 * 120.00101 * 10 8 6 13 13 H 1.48506 * 109.47101 * 239.99972 * 10 8 6 14 14 N 1.46897 * 109.47358 * 119.99525 * 2 1 3 15 15 C 1.46900 * 111.00116 * 275.00339 * 14 2 1 16 16 C 1.50709 * 109.47147 * 179.97438 * 15 14 2 17 17 C 1.35311 * 126.12584 * 95.02056 * 16 15 14 18 18 C 1.39876 * 107.91749 * 179.97438 * 17 16 15 19 19 N 1.30834 * 108.20073 * 0.27043 * 18 17 16 20 20 N 1.34947 * 126.12387 * 274.98485 * 16 15 14 21 21 C 1.46500 * 126.04040 * 0.03254 * 20 16 15 22 22 C 1.52992 * 109.47291 * 90.00121 * 21 20 16 23 23 F 1.39904 * 109.47446 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.46860 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46798 * 300.00417 * 1 2 3 26 26 H 1.09002 * 109.46845 * 60.00333 * 1 2 3 27 27 H 1.09002 * 109.46671 * 294.99872 * 4 2 1 28 28 H 1.09004 * 109.47042 * 54.99988 * 4 2 1 29 29 H 1.09001 * 109.47245 * 300.00716 * 5 4 2 30 30 H 1.09004 * 109.46799 * 60.00065 * 5 4 2 31 31 H 0.96991 * 120.00236 * 179.97438 * 9 8 6 32 32 H 1.00904 * 111.00588 * 151.04817 * 14 2 1 33 33 H 1.08995 * 109.47323 * 60.00176 * 15 14 2 34 34 H 1.08994 * 109.47031 * 299.99417 * 15 14 2 35 35 H 1.07992 * 126.04231 * 359.94661 * 17 16 15 36 36 H 1.08002 * 125.89548 * 179.97438 * 18 17 16 37 37 H 1.08996 * 109.47009 * 210.00717 * 21 20 16 38 38 H 1.09011 * 109.46832 * 330.00309 * 21 20 16 39 39 H 1.09004 * 109.47306 * 300.00297 * 22 21 20 40 40 H 1.08999 * 109.47288 * 60.00008 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0673 -1.3242 -2.5437 7 1 3.3689 -1.8047 -3.2129 8 6 5.4186 -1.3604 -2.8155 9 7 6.2691 -0.7750 -2.0010 10 14 6.0412 -2.2411 -4.3406 11 1 4.8913 -2.8126 -5.0864 12 1 6.7636 -1.2769 -5.2088 13 1 6.9638 -3.3335 -3.9395 14 7 2.0197 -0.6924 1.1995 15 6 2.0825 0.2228 2.3469 16 6 2.5874 -0.5216 3.5561 17 6 3.8704 -0.5731 3.9829 18 6 3.9093 -1.3658 5.1346 19 7 2.6942 -1.7803 5.3867 20 7 1.8408 -1.2556 4.4075 21 6 0.3944 -1.4709 4.3198 22 6 0.1144 -2.7162 3.4763 23 9 -1.2669 -2.9215 3.3920 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7716 -1.2054 28 1 1.6055 -0.2618 -2.1370 29 1 3.8533 0.4370 -1.3573 30 1 3.9995 -1.0728 -0.4259 31 1 7.2196 -0.8007 -2.1920 32 1 2.9174 -1.1204 1.0288 33 1 1.0871 0.6164 2.5525 34 1 2.7588 1.0463 2.1182 35 1 4.7151 -0.0882 3.5165 36 1 4.7910 -1.5997 5.7129 37 1 -0.0135 -1.6107 5.3208 38 1 -0.0744 -0.6038 3.8543 39 1 0.5223 -2.5763 2.4752 40 1 0.5832 -3.5832 3.9417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:06 Heat of formation + Delta-G solvation = -10.901634 kcal Electronic energy + Delta-G solvation = -20744.000546 eV Core-core repulsion = 17508.345103 eV Total energy + Delta-G solvation = -3235.655442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.160 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.71157 -42.23414 -38.62003 -35.45896 -35.03274 -33.69616 -31.41757 -30.10747 -29.69991 -27.16412 -25.85005 -24.60817 -23.18166 -22.07840 -21.10088 -20.62515 -18.59361 -18.03735 -17.21783 -17.05392 -16.68642 -16.53022 -16.22215 -15.98909 -15.20129 -15.03413 -14.92267 -14.53096 -14.37842 -14.17867 -13.88360 -13.51180 -13.20156 -13.10776 -12.94278 -12.85705 -12.54789 -12.38706 -12.32509 -11.95647 -11.85936 -11.63475 -11.53744 -11.27850 -10.94471 -10.53388 -10.32349 -9.59233 -9.37064 -8.19156 -6.28686 0.78068 1.39243 1.40693 1.46330 1.52734 1.85734 2.41430 3.14274 3.24179 3.49191 3.52540 3.65209 3.93560 4.01865 4.09125 4.15798 4.24462 4.34303 4.44664 4.52039 4.56566 4.74689 4.79390 4.81651 4.88314 5.01813 5.06285 5.10749 5.18366 5.25558 5.47742 5.56139 5.70710 5.72101 5.87038 5.99000 6.15244 6.27598 6.32919 6.71316 6.88293 7.40436 8.92123 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.018122 B = 0.004570 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.725538 B = 6125.098907 C = 6863.447713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.090 3.910 3 H 0.038 0.962 4 C -0.102 4.102 5 C 0.027 3.973 6 C -0.541 4.541 7 H 0.056 0.944 8 C 0.004 3.996 9 N -0.929 5.929 10 Si 0.957 3.043 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.280 1.280 14 N -0.681 5.681 15 C 0.121 3.879 16 C 0.094 3.906 17 C -0.283 4.283 18 C 0.049 3.951 19 N -0.324 5.324 20 N -0.364 5.364 21 C 0.109 3.891 22 C 0.052 3.948 23 F -0.215 7.215 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.057 0.943 29 H -0.013 1.013 30 H 0.000 1.000 31 H 0.262 0.738 32 H 0.342 0.658 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.149 0.851 36 H 0.209 0.791 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 1.540 12.516 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.019 4.019 3 H 0.056 0.944 4 C -0.140 4.140 5 C -0.010 4.010 6 C -0.579 4.579 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.783 3.217 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.205 1.205 14 N -0.315 5.315 15 C -0.010 4.010 16 C -0.034 4.034 17 C -0.313 4.313 18 C -0.136 4.136 19 N -0.145 5.145 20 N -0.147 5.147 21 C -0.012 4.012 22 C -0.004 4.004 23 F -0.196 7.196 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.005 0.995 30 H 0.018 0.982 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.167 0.833 36 H 0.226 0.774 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.108 0.892 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.478 0.612 13.476 18.376 hybrid contribution 2.171 0.550 -1.542 2.719 sum -10.307 1.162 11.933 15.811 Atomic orbital electron populations 1.21732 0.92968 1.02144 1.01852 1.21542 0.96358 0.95351 0.88691 0.94380 1.21645 0.96114 0.99789 0.96449 1.19005 0.92132 0.94579 0.95291 1.21719 0.92427 1.34401 1.09386 0.92608 1.25873 0.97433 0.96328 0.99781 1.70071 1.02691 1.45367 1.38839 0.85511 0.78407 0.78349 0.79463 1.18826 1.20480 1.20541 1.60732 1.34159 1.32266 1.04375 1.20569 1.01846 0.92676 0.85888 1.21146 0.91942 0.96439 0.93878 1.21582 0.96851 1.10961 1.01856 1.24285 0.96154 0.96187 0.96990 1.77296 1.01847 1.22344 1.12987 1.48402 1.07460 1.38304 1.20516 1.22217 0.75511 1.00019 1.03500 1.22293 0.76393 0.98664 1.03022 1.92759 1.32865 1.96187 1.97823 0.92545 0.91736 0.91915 0.92874 0.92406 0.99461 0.98170 0.92884 0.83789 0.88079 0.92494 0.83303 0.77414 0.87038 0.86315 0.89215 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.42 71.98 0.68 -2.35 16 2 C 0.09 2.68 2.65 44.92 0.12 2.80 16 3 H 0.04 1.18 7.80 -2.38 -0.02 1.16 16 4 C -0.10 -3.91 4.74 30.60 0.15 -3.77 16 5 C 0.03 1.35 4.80 29.85 0.14 1.49 16 6 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 7 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 8 C 0.00 0.22 5.46 84.66 0.46 0.68 16 9 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 10 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 N -0.68 -19.67 6.19 -495.57 -3.07 -22.74 16 15 C 0.12 2.91 5.65 85.56 0.48 3.40 16 16 C 0.09 2.43 6.44 41.41 0.27 2.69 16 17 C -0.28 -7.55 10.72 21.99 0.24 -7.32 16 18 C 0.05 1.22 12.03 85.24 1.03 2.24 16 19 N -0.32 -8.81 12.58 -57.02 -0.72 -9.53 16 20 N -0.36 -8.99 3.61 -334.70 -1.21 -10.20 16 21 C 0.11 2.09 6.70 86.38 0.58 2.67 16 22 C 0.05 1.11 7.88 71.98 0.57 1.67 16 23 F -0.22 -4.90 17.36 44.97 0.78 -4.12 16 24 H 0.06 1.36 8.14 -2.38 -0.02 1.35 16 25 H 0.06 1.25 7.45 -2.39 -0.02 1.23 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 30 H 0.00 0.00 6.43 -2.39 -0.02 -0.01 16 31 H 0.26 14.69 8.31 -92.72 -0.77 13.92 16 32 H 0.34 12.02 6.46 -89.69 -0.58 11.44 16 33 H 0.10 1.97 6.53 -2.39 -0.02 1.96 16 34 H 0.06 1.43 8.05 -2.39 -0.02 1.41 16 35 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.21 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.12 1.84 7.15 -2.38 -0.02 1.82 16 39 H 0.09 2.15 8.03 -2.38 -0.02 2.13 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -64.07 336.54 3.48 -60.59 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.44 Total: 20.73 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.94 Total: -25.65 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.71 Total: -97.41 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.78 Total: -4.12 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -64.07 3.48 -60.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.683 kcal (2) G-P(sol) polarization free energy of solvation -64.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds