Wall clock time and date at job start Mon Mar 30 2020 01:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 C 1.52998 * 109.47393 * 120.00318 * 2 1 3 5 5 C 1.53003 * 109.47153 * 185.00041 * 4 2 1 6 6 C 1.50703 * 109.47209 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99433 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00239 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99932 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00222 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46977 * 59.99629 * 10 8 6 12 12 H 1.48497 * 109.47131 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47141 * 299.99673 * 10 8 6 14 14 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 15 15 C 1.46902 * 110.99573 * 84.99799 * 14 2 1 16 16 C 1.50707 * 109.46656 * 179.97438 * 15 14 2 17 17 C 1.34673 * 126.58780 * 95.02733 * 16 15 14 18 18 N 1.34126 * 108.02057 * 179.97438 * 17 16 15 19 19 C 1.30501 * 109.25359 * 0.02562 * 18 17 16 20 20 N 1.35046 * 108.70313 * 359.76568 * 19 18 17 21 21 C 1.46493 * 126.39931 * 180.26889 * 20 19 18 22 22 C 1.52997 * 109.47098 * 265.12049 * 21 20 19 23 23 F 1.39907 * 109.46975 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 25 25 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 26 26 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47340 * 305.00186 * 4 2 1 28 28 H 1.08998 * 109.47465 * 65.00449 * 4 2 1 29 29 H 1.08998 * 109.47437 * 299.99841 * 5 4 2 30 30 H 1.09003 * 109.47270 * 60.00103 * 5 4 2 31 31 H 0.96997 * 119.99636 * 180.02562 * 9 8 6 32 32 H 1.00896 * 111.00309 * 321.04211 * 14 2 1 33 33 H 1.08990 * 109.47358 * 299.99539 * 15 14 2 34 34 H 1.09004 * 109.47457 * 60.00221 * 15 14 2 35 35 H 1.08004 * 125.98529 * 359.96303 * 17 16 15 36 36 H 1.08000 * 125.64517 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.47118 * 25.11947 * 21 20 19 38 38 H 1.08998 * 109.47051 * 145.11676 * 21 20 19 39 39 H 1.09004 * 109.47573 * 299.99865 * 22 21 20 40 40 H 1.09007 * 109.47207 * 60.00026 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3232 2.5443 7 1 3.3687 -1.8031 3.2138 8 6 5.4184 -1.3593 2.8162 9 7 6.2690 -0.7745 2.0011 10 14 6.0411 -2.2387 4.3421 11 1 5.6485 -3.6696 4.2835 12 1 7.5210 -2.1339 4.4045 13 1 5.4486 -1.6119 5.5510 14 7 2.0197 -0.6925 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5884 -0.5214 -3.5558 17 6 1.8395 -1.0991 -4.5144 18 7 2.6687 -1.6547 -5.4103 19 6 3.9030 -1.4437 -5.0430 20 7 3.8976 -0.7357 -3.8930 21 6 5.0732 -0.2833 -3.1451 22 6 5.4010 -1.2977 -2.0477 23 9 6.5240 -0.8658 -1.3338 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6054 -0.2619 2.1369 28 1 1.7518 -1.7716 1.2055 29 1 3.9995 -1.0727 0.4259 30 1 3.8533 0.4370 1.3573 31 1 7.2196 -0.8002 2.1922 32 1 1.4496 -1.4979 -1.4101 33 1 1.0870 0.6163 -2.5525 34 1 2.7588 1.0464 -2.1182 35 1 0.7603 -1.1127 -4.5546 36 1 4.7832 -1.7763 -5.5732 37 1 5.9225 -0.1938 -3.8226 38 1 4.8652 0.6866 -2.6932 39 1 4.5517 -1.3872 -1.3702 40 1 5.6090 -2.2675 -2.4997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:16 Heat of formation + Delta-G solvation = -22.491307 kcal Electronic energy + Delta-G solvation = -21308.173856 eV Core-core repulsion = 18072.015848 eV Total energy + Delta-G solvation = -3236.158008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.160 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.44489 -43.04247 -38.55480 -35.63148 -35.31537 -33.59397 -31.25785 -30.24201 -29.45871 -26.95302 -25.63436 -24.52995 -23.08612 -22.37563 -21.45421 -20.66064 -18.38972 -18.15009 -17.13670 -16.97594 -16.50760 -16.39140 -16.04728 -15.97253 -15.34488 -15.16712 -14.72861 -14.43668 -14.34861 -14.06474 -13.78819 -13.68214 -13.42684 -13.15161 -12.95542 -12.81506 -12.52614 -12.46480 -12.33384 -11.86508 -11.72684 -11.43226 -11.10966 -10.94090 -10.89101 -10.54964 -10.38373 -9.40837 -9.10309 -8.03964 -6.13802 1.03246 1.41247 1.42525 1.50075 1.78755 2.19598 2.47088 3.26187 3.35533 3.57563 3.63133 3.73807 3.90775 4.08755 4.12085 4.20335 4.32013 4.40745 4.41896 4.53448 4.55736 4.63292 4.81781 4.83380 4.92747 5.04306 5.10019 5.14666 5.33744 5.46017 5.51602 5.65676 5.77692 5.94686 6.10968 6.21313 6.28583 6.42364 6.58408 7.02844 7.11765 7.52283 9.03469 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.006029 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.158069 B = 4643.151529 C = 5883.619905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 H 0.064 0.936 4 C -0.091 4.091 5 C 0.042 3.958 6 C -0.548 4.548 7 H 0.047 0.953 8 C 0.009 3.991 9 N -0.908 5.908 10 Si 0.946 3.054 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.272 1.272 14 N -0.685 5.685 15 C 0.139 3.861 16 C -0.019 4.019 17 C -0.034 4.034 18 N -0.526 5.526 19 C 0.183 3.817 20 N -0.445 5.445 21 C 0.092 3.908 22 C 0.047 3.953 23 F -0.217 7.217 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.016 0.984 30 H -0.026 1.026 31 H 0.257 0.743 32 H 0.344 0.656 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.181 0.819 36 H 0.235 0.765 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 2.057 -12.625 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.015 4.015 3 H 0.082 0.918 4 C -0.129 4.129 5 C 0.005 3.995 6 C -0.586 4.586 7 H 0.066 0.934 8 C -0.190 4.190 9 N -0.547 5.547 10 Si 0.772 3.228 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.197 1.197 14 N -0.317 5.317 15 C 0.009 3.991 16 C -0.135 4.135 17 C -0.182 4.182 18 N -0.244 5.244 19 C -0.099 4.099 20 N -0.127 5.127 21 C -0.031 4.031 22 C -0.009 4.009 23 F -0.198 7.198 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.034 0.966 30 H -0.007 1.007 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.198 0.802 36 H 0.251 0.749 37 H 0.148 0.852 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.395 1.821 -13.093 14.685 hybrid contribution 0.141 0.086 1.585 1.593 sum -6.254 1.907 -11.508 13.236 Atomic orbital electron populations 1.22389 0.95397 1.02440 1.02580 1.21488 0.93325 0.96980 0.89727 0.91787 1.21482 0.96969 0.98900 0.95531 1.18835 0.91729 0.93678 0.95240 1.21687 0.92264 1.34985 1.09703 0.93446 1.25770 0.97498 0.96509 0.99255 1.70108 1.02177 1.44541 1.37905 0.85802 0.77023 0.79318 0.80626 1.19827 1.21112 1.19681 1.60446 1.58657 1.09683 1.02917 1.20234 1.00108 0.93309 0.85417 1.21319 0.83768 1.07916 1.00456 1.22333 1.00158 1.02539 0.93176 1.70280 1.00898 1.23798 1.29471 1.25600 0.98484 0.97909 0.87885 1.45269 1.06162 1.41249 1.20029 1.22300 0.87627 0.98499 0.94719 1.22343 0.87047 0.97739 0.93777 1.92830 1.54668 1.91672 1.80624 0.91930 0.91441 0.92150 0.93582 0.93751 0.96608 1.00742 0.93387 0.83660 0.90896 0.91424 0.80179 0.74868 0.85220 0.88713 0.90173 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 9.16 71.98 0.66 -3.11 16 2 C 0.09 2.81 2.59 44.91 0.12 2.92 16 3 H 0.06 2.01 7.80 -2.39 -0.02 1.99 16 4 C -0.09 -3.57 4.83 30.59 0.15 -3.42 16 5 C 0.04 2.16 4.86 29.85 0.15 2.31 16 6 C -0.55 -31.31 9.11 25.60 0.23 -31.07 16 7 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 8 C 0.01 0.52 5.46 84.65 0.46 0.98 16 9 N -0.91 -54.72 13.29 21.45 0.28 -54.44 16 10 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 14 N -0.69 -19.27 5.19 -495.56 -2.57 -21.84 16 15 C 0.14 3.30 5.74 85.56 0.49 3.79 16 16 C -0.02 -0.48 6.47 40.96 0.26 -0.22 16 17 C -0.03 -0.85 11.79 83.52 0.98 0.14 16 18 N -0.53 -14.24 11.25 -200.30 -2.25 -16.50 16 19 C 0.18 4.14 12.56 180.26 2.26 6.40 16 20 N -0.44 -10.62 2.75 -514.57 -1.42 -12.04 16 21 C 0.09 2.19 6.39 86.38 0.55 2.75 16 22 C 0.05 1.52 7.88 71.98 0.57 2.08 16 23 F -0.22 -9.03 17.36 44.97 0.78 -8.25 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.24 7.45 -2.39 -0.02 1.22 16 26 H 0.06 1.30 8.13 -2.38 -0.02 1.28 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.02 0.85 5.89 -2.39 -0.01 0.83 16 30 H -0.03 -1.47 8.14 -2.39 -0.02 -1.49 16 31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.34 9.07 8.46 -89.70 -0.76 8.31 16 33 H 0.07 1.41 7.43 -2.39 -0.02 1.39 16 34 H 0.07 1.74 7.38 -2.38 -0.02 1.73 16 35 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.24 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.13 2.26 8.13 -2.38 -0.02 2.24 16 38 H 0.09 2.39 7.45 -2.39 -0.02 2.38 16 39 H 0.08 3.13 5.77 -2.39 -0.01 3.12 16 40 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -68.96 334.31 4.01 -64.95 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.27 Total: 17.55 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 6.89 Total: -16.46 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -5.96 Total: -104.81 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 0.78 Total: -8.25 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -68.96 4.01 -64.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.463 kcal (2) G-P(sol) polarization free energy of solvation -68.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds