Wall clock time and date at job start Mon Mar 30 2020 01:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99782 * 2 1 4 4 H 1.48506 * 109.47260 * 240.00359 * 3 2 1 5 5 H 1.48493 * 109.47412 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47029 * 120.00726 * 3 2 1 7 7 C 1.37878 * 120.00497 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00732 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99787 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47091 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47100 * 60.00113 * 11 10 9 13 13 N 1.46900 * 109.47556 * 60.00072 * 12 11 10 14 14 C 1.46894 * 111.00559 * 154.99999 * 13 12 11 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 O 1.43750 * 109.62891 * 294.36141 * 16 15 14 18 18 C 1.44788 * 104.81511 * 215.81029 * 17 16 15 19 19 C 1.54915 * 101.72171 * 36.10619 * 18 17 16 20 20 O 1.43365 * 109.62865 * 175.00346 * 16 15 14 21 21 C 1.53006 * 109.47185 * 299.99828 * 12 11 10 22 22 C 1.52997 * 109.46963 * 60.00030 * 21 12 11 23 23 H 0.96999 * 120.00111 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47202 * 300.00366 * 9 7 2 25 25 H 1.09000 * 109.47272 * 59.99917 * 10 9 7 26 26 H 1.08999 * 109.46770 * 300.00039 * 10 9 7 27 27 H 1.08994 * 109.46760 * 299.99654 * 11 10 9 28 28 H 1.08998 * 109.46777 * 179.97438 * 11 10 9 29 29 H 1.08997 * 109.47132 * 180.02562 * 12 11 10 30 30 H 1.00905 * 110.99607 * 278.95497 * 13 12 11 31 31 H 1.09002 * 109.47104 * 59.99767 * 14 13 12 32 32 H 1.08998 * 109.46828 * 300.00600 * 14 13 12 33 33 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 34 34 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 35 35 H 1.08991 * 109.63204 * 54.60671 * 16 15 14 36 36 H 1.09001 * 110.98122 * 277.99411 * 18 17 16 37 37 H 1.09004 * 111.01166 * 154.22679 * 18 17 16 38 38 H 1.09004 * 110.69598 * 206.04323 * 19 18 17 39 39 H 1.08995 * 110.84242 * 82.90532 * 19 18 17 40 40 H 1.08994 * 109.47007 * 180.02562 * 21 12 11 41 41 H 1.08999 * 109.46772 * 300.00269 * 21 12 11 42 42 H 1.09001 * 109.47270 * 179.97438 * 22 21 12 43 43 H 1.09002 * 109.47136 * 59.99962 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 0.6013 -5.0678 -1.2507 13 7 1.4461 -4.9897 -2.4499 14 6 0.7919 -5.6317 -3.5977 15 6 1.7003 -5.5309 -4.8247 16 6 1.0185 -6.1991 -6.0203 17 8 0.8890 -7.6098 -5.7761 18 6 1.0864 -8.2291 -7.0699 19 6 2.1656 -7.3114 -7.6968 20 8 1.8129 -6.0053 -7.1979 21 6 -0.3931 -3.9049 -1.2507 22 6 0.3719 -2.5799 -1.2501 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 0.8894 26 1 2.8720 -3.6042 -0.8905 27 1 0.8535 -5.0451 0.8886 28 1 2.1887 -5.8155 -0.0016 29 1 0.0559 -6.0116 -1.2509 30 1 1.6879 -4.0328 -2.6601 31 1 -0.1542 -5.1309 -3.8035 32 1 0.6053 -6.6810 -3.3693 33 1 2.6462 -6.0320 -4.6186 34 1 1.8872 -4.4816 -5.0531 35 1 0.0306 -5.7633 -6.1691 36 1 0.1680 -8.2087 -7.6566 37 1 1.4559 -9.2490 -6.9627 38 1 2.1079 -7.3366 -8.7850 39 1 3.1616 -7.5969 -7.3585 40 1 -1.0197 -3.9627 -2.1407 41 1 -1.0200 -3.9630 -0.3610 42 1 -0.3364 -1.7514 -1.2505 43 1 0.9989 -2.5219 -2.1398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:54 Heat of formation + Delta-G solvation = -129.121547 kcal Electronic energy + Delta-G solvation = -21310.421009 eV Core-core repulsion = 18160.806721 eV Total energy + Delta-G solvation = -3149.614289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32262 -40.04658 -36.43381 -35.99511 -34.60789 -32.61404 -31.26558 -30.61188 -28.99444 -26.52398 -24.89111 -24.01136 -23.19367 -22.51994 -22.22766 -19.60596 -18.37557 -18.34103 -17.70952 -17.12799 -16.81168 -16.50662 -15.87941 -15.53148 -15.22683 -15.00433 -14.60432 -14.44817 -14.13609 -13.93222 -13.86459 -13.65431 -13.44130 -12.95942 -12.84606 -12.72976 -12.60083 -12.49634 -12.17225 -12.07986 -11.85449 -11.71629 -11.66098 -11.17669 -11.12140 -10.65530 -10.62369 -10.51164 -10.29990 -9.21130 -8.05216 -6.19064 1.41650 1.42458 1.50079 2.44771 2.47111 2.89456 3.20590 3.41410 3.71626 3.95664 3.97681 4.05916 4.11161 4.14511 4.20834 4.30121 4.34179 4.53360 4.61533 4.63553 4.68183 4.71169 4.78763 4.87749 4.92973 4.94051 5.02277 5.07324 5.10460 5.22457 5.27724 5.32076 5.45412 5.52281 5.66041 5.73170 6.05870 6.08252 6.20093 6.29222 6.45829 6.51424 6.93924 7.48827 8.97870 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025623 B = 0.003840 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.494924 B = 7289.000979 C = 7846.239860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.048 3.952 10 C -0.098 4.098 11 C -0.098 4.098 12 C 0.100 3.900 13 N -0.686 5.686 14 C 0.070 3.930 15 C -0.123 4.123 16 C 0.238 3.762 17 O -0.394 6.394 18 C 0.012 3.988 19 C 0.014 3.986 20 O -0.407 6.407 21 C -0.140 4.140 22 C -0.097 4.097 23 H 0.259 0.741 24 H -0.011 1.011 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.340 0.660 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 -16.690 -14.141 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.067 0.933 9 C 0.029 3.971 10 C -0.136 4.136 11 C -0.136 4.136 12 C -0.010 4.010 13 N -0.319 5.319 14 C -0.059 4.059 15 C -0.161 4.161 16 C 0.143 3.857 17 O -0.314 6.314 18 C -0.064 4.064 19 C -0.062 4.062 20 O -0.328 6.328 21 C -0.179 4.179 22 C -0.135 4.135 23 H 0.068 0.932 24 H 0.007 0.993 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.161 0.839 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.142 -17.032 -13.858 21.987 hybrid contribution -0.447 1.932 -0.057 1.984 sum 0.695 -15.101 -13.915 20.546 Atomic orbital electron populations 1.70014 1.07077 1.26918 1.51643 1.25713 0.95636 1.02200 0.95027 0.85746 0.78478 0.79465 0.78764 1.19686 1.21053 1.19859 1.21629 0.92971 0.92504 1.50112 0.93288 1.18605 0.93032 0.92301 0.93147 1.21427 0.97860 0.94501 0.99801 1.21477 0.98468 0.97342 0.96311 1.21432 0.92124 0.96910 0.90566 1.60716 1.43872 1.23532 1.03750 1.21767 0.94783 0.99687 0.89705 1.21866 0.99949 1.01211 0.93103 1.23991 0.94103 0.82466 0.85188 1.89253 1.92991 1.18391 1.30815 1.24642 0.99040 0.99645 0.83045 1.24448 0.99185 0.80832 1.01735 1.88887 1.72016 1.29546 1.42388 1.22152 0.98416 0.96729 1.00563 1.21345 0.98612 0.95842 0.97723 0.93237 0.99317 0.94438 0.92998 0.92568 0.91172 0.89919 0.83903 0.95490 0.90466 0.90786 0.90677 0.89473 0.89320 0.85156 0.85903 0.90233 0.92990 0.93033 0.92729 0.95171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 11.32 21.45 0.24 -53.54 16 2 C 0.01 0.70 5.30 84.66 0.45 1.15 16 3 Si 0.95 44.46 29.54 68.60 2.03 46.48 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.53 -30.06 8.56 25.60 0.22 -29.84 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.05 2.41 2.10 -11.54 -0.02 2.39 16 10 C -0.10 -4.15 4.90 30.60 0.15 -4.00 16 11 C -0.10 -3.42 5.64 30.59 0.17 -3.25 16 12 C 0.10 3.29 2.85 44.92 0.13 3.41 16 13 N -0.69 -21.87 5.77 -491.59 -2.83 -24.70 16 14 C 0.07 1.90 5.39 86.30 0.46 2.36 16 15 C -0.12 -3.12 5.56 30.59 0.17 -2.95 16 16 C 0.24 5.39 4.01 71.98 0.29 5.67 16 17 O -0.39 -8.48 10.92 -126.22 -1.38 -9.86 16 18 C 0.01 0.15 7.95 72.64 0.58 0.73 16 19 C 0.01 0.19 8.07 72.64 0.59 0.78 16 20 O -0.41 -9.20 11.21 -126.22 -1.42 -10.62 16 21 C -0.14 -5.30 5.52 30.60 0.17 -5.14 16 22 C -0.10 -4.57 4.72 30.59 0.14 -4.42 16 23 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 24 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 2.19 7.21 -2.39 -0.02 2.18 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 2.42 7.80 -2.39 -0.02 2.40 16 30 H 0.34 12.10 5.56 -89.69 -0.50 11.60 16 31 H 0.03 0.74 7.44 -2.39 -0.02 0.72 16 32 H 0.08 2.06 7.76 -2.39 -0.02 2.04 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.83 7.45 -2.39 -0.02 1.81 16 41 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 2.97 6.07 -2.39 -0.01 2.95 16 43 H 0.03 1.39 6.26 -2.39 -0.01 1.38 16 Total: -1.00 -63.50 329.99 0.61 -62.88 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.48 Total: 22.45 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 3.50 Total: -33.09 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.59 Total: -78.24 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -2.79 Total: -20.48 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -63.50 0.61 -62.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.239 kcal (2) G-P(sol) polarization free energy of solvation -63.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds