Wall clock time and date at job start Mon Mar 30 2020 01:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99532 * 2 1 4 4 H 1.48502 * 109.46813 * 90.00388 * 3 2 1 5 5 H 1.48500 * 109.47156 * 210.00149 * 3 2 1 6 6 H 1.48496 * 109.47591 * 330.00447 * 3 2 1 7 7 C 1.37879 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99580 * 335.19852 * 7 2 1 9 9 C 1.50693 * 119.99957 * 155.19552 * 7 2 1 10 10 C 1.53002 * 109.47459 * 294.32939 * 9 7 2 11 11 C 1.52998 * 109.47190 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46879 * 60.00323 * 11 10 9 13 13 N 1.46906 * 109.46816 * 179.97438 * 12 11 10 14 14 C 1.47602 * 110.99928 * 196.18786 * 13 12 11 15 15 C 1.50728 * 108.45745 * 152.98459 * 14 13 12 16 16 O 1.43942 * 111.88365 * 93.37523 * 15 14 13 17 17 C 1.44225 * 116.11058 * 319.24759 * 16 15 14 18 18 C 1.50731 * 112.85136 * 318.68423 * 17 16 15 19 19 H 1.09005 * 109.52323 * 331.63286 * 18 17 16 20 20 O 1.42897 * 109.58655 * 211.46144 * 18 17 16 21 21 C 1.40461 * 111.00176 * 67.74231 * 13 12 11 22 22 C 1.52999 * 109.47128 * 299.99515 * 12 11 10 23 23 C 1.52998 * 109.47154 * 60.00241 * 22 12 11 24 24 H 0.97008 * 119.99945 * 174.94991 * 1 2 3 25 25 H 1.09007 * 109.47338 * 54.33139 * 9 7 2 26 26 H 1.08995 * 109.47015 * 299.99943 * 10 9 7 27 27 H 1.09003 * 109.46828 * 59.99882 * 10 9 7 28 28 H 1.08998 * 109.47687 * 299.99929 * 11 10 9 29 29 H 1.09003 * 109.46993 * 179.97438 * 11 10 9 30 30 H 1.08995 * 109.47519 * 59.99831 * 12 11 10 31 31 H 1.09003 * 109.64019 * 272.67930 * 14 13 12 32 32 H 1.09004 * 109.63832 * 33.29676 * 14 13 12 33 33 H 1.08994 * 109.00135 * 332.75855 * 15 14 13 34 34 H 1.09004 * 108.93919 * 213.94947 * 15 14 13 35 35 H 1.09009 * 108.80441 * 197.82237 * 17 16 15 36 36 H 1.08999 * 108.72275 * 79.49531 * 17 16 15 37 37 H 0.96697 * 114.00334 * 60.30669 * 20 18 17 38 38 H 1.09004 * 109.08087 * 308.32880 * 21 13 12 39 39 H 1.08998 * 109.08571 * 67.38024 * 21 13 12 40 40 H 1.09004 * 109.47439 * 300.00520 * 22 12 11 41 41 H 1.09000 * 109.47286 * 179.97438 * 22 12 11 42 42 H 1.08995 * 109.47478 * 180.02562 * 23 22 12 43 43 H 1.09007 * 109.47223 * 59.99857 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5465 1.4404 -0.7001 6 1 1.4464 2.6528 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.5393 -2.0864 0.3914 9 6 3.4072 -1.2539 -0.5481 10 6 3.3807 -0.9687 -2.0510 11 6 4.8049 -1.0289 -2.6068 12 6 5.3894 -2.4216 -2.3622 13 7 6.7567 -2.4795 -2.8963 14 6 7.2123 -3.8767 -3.0332 15 6 8.2416 -3.9375 -4.1326 16 8 9.5810 -3.8090 -3.6212 17 6 9.7701 -2.8353 -2.5743 18 6 9.0115 -1.5562 -2.8206 19 1 8.8927 -1.4040 -3.8934 20 8 9.7312 -0.4568 -2.2590 21 6 7.6215 -1.6565 -2.1563 22 6 5.4160 -2.7067 -0.8592 23 6 3.9918 -2.6465 -0.3034 24 1 -0.4850 -0.8369 -0.0740 25 1 4.0248 -0.5080 -0.0476 26 1 2.7633 -1.7145 -2.5515 27 1 2.9647 0.0236 -2.2253 28 1 5.4221 -0.2828 -2.1063 29 1 4.7860 -0.8262 -3.6776 30 1 4.7723 -3.1676 -2.8627 31 1 7.6573 -4.2105 -2.0958 32 1 6.3660 -4.5147 -3.2881 33 1 8.0531 -3.1302 -4.8402 34 1 8.1498 -4.8920 -4.6509 35 1 10.8326 -2.6043 -2.4969 36 1 9.4351 -3.2664 -1.6309 37 1 10.6154 -0.3345 -2.6308 38 1 7.1885 -0.6587 -2.0836 39 1 7.7354 -2.0692 -1.1539 40 1 6.0331 -1.9606 -0.3586 41 1 5.8319 -3.6991 -0.6850 42 1 4.0107 -2.8492 0.7674 43 1 3.3745 -3.3927 -0.8040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:42 Heat of formation + Delta-G solvation = -97.317806 kcal Electronic energy + Delta-G solvation = -22245.840237 eV Core-core repulsion = 19097.605062 eV Total energy + Delta-G solvation = -3148.235175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51348 -38.21102 -36.70497 -35.54117 -32.54474 -31.24237 -30.20307 -29.92485 -27.47525 -26.47690 -23.78528 -22.40548 -21.56593 -21.09768 -19.98922 -18.62691 -17.64254 -17.44566 -17.13045 -16.38286 -15.67644 -15.12871 -14.82327 -13.95637 -13.75345 -13.67820 -13.59391 -13.49553 -13.23258 -13.18845 -12.37444 -12.26478 -12.04507 -11.68111 -11.56615 -11.32637 -11.14693 -10.82007 -10.65167 -10.48501 -10.43022 -10.37984 -10.17506 -9.77663 -9.56591 -9.44637 -9.29533 -8.83828 -8.15570 -8.07427 -6.41961 -3.99850 3.36668 3.44850 3.47747 3.63057 3.63798 4.34049 4.49843 4.54686 4.55189 4.86191 4.88374 5.02063 5.13709 5.23154 5.26025 5.31701 5.40811 5.45094 5.61453 5.67862 5.69771 5.84425 5.86846 5.93322 6.03741 6.15432 6.21737 6.25201 6.43675 6.56359 6.61353 6.78446 6.84442 6.95543 7.08257 7.13745 7.31473 7.41372 7.41521 7.62695 8.26240 8.42572 8.95865 9.65019 10.93936 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030648 B = 0.004946 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.381711 B = 5659.756707 C = 6145.386342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.038 3.962 3 Si 1.036 2.964 4 H -0.287 1.287 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.608 4.608 8 H 0.053 0.947 9 C 0.023 3.977 10 C -0.108 4.108 11 C -0.112 4.112 12 C 0.099 3.901 13 N -0.549 5.549 14 C 0.023 3.977 15 C 0.059 3.941 16 O -0.392 6.392 17 C 0.031 3.969 18 C 0.075 3.925 19 H 0.072 0.928 20 O -0.558 6.558 21 C 0.071 3.929 22 C -0.149 4.149 23 C -0.094 4.094 24 H 0.269 0.731 25 H 0.020 0.980 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.380 0.620 38 H 0.092 0.908 39 H 0.035 0.965 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.842 -5.799 -7.777 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.168 4.168 3 Si 0.864 3.136 4 H -0.214 1.214 5 H -0.199 1.199 6 H -0.214 1.214 7 C -0.645 4.645 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.008 4.008 13 N -0.273 5.273 14 C -0.104 4.104 15 C -0.017 4.017 16 O -0.311 6.311 17 C -0.045 4.045 18 C 0.015 3.985 19 H 0.090 0.910 20 O -0.363 6.363 21 C -0.058 4.058 22 C -0.188 4.188 23 C -0.133 4.133 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.227 0.773 38 H 0.111 0.889 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 18.247 -4.025 -7.874 20.277 hybrid contribution 0.488 -1.968 0.584 2.110 sum 18.734 -5.993 -7.290 20.977 Atomic orbital electron populations 1.70819 1.07523 1.30455 1.44663 1.25695 0.95831 1.02356 0.92937 0.84108 0.76123 0.76149 0.77188 1.21387 1.19910 1.21411 1.21926 0.99136 0.97471 1.45952 0.92846 1.19009 0.96758 0.92188 0.91675 1.21877 0.92787 1.00920 0.99092 1.21722 0.98250 0.94722 1.00344 1.21762 0.86327 0.99343 0.93355 1.59294 1.03389 1.09287 1.55354 1.22465 0.99224 0.89918 0.98784 1.22528 0.80992 1.02468 0.95713 1.88267 1.28910 1.58824 1.55140 1.23141 1.00756 0.89463 0.91185 1.22187 0.92345 0.85731 0.98259 0.90994 1.86518 1.32489 1.50123 1.67141 1.20947 0.90838 0.99581 0.94484 1.22264 0.99866 0.99979 0.96737 1.21403 0.92643 0.99951 0.99273 0.92165 0.96232 0.93003 0.92890 0.92613 0.92459 0.89975 0.93198 0.89202 0.91502 0.88972 0.89228 0.92731 0.77283 0.88940 0.94655 0.92126 0.93591 0.93158 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.69 55.43 0.76 -26.87 16 2 C 0.04 1.08 5.23 -17.82 -0.09 0.99 16 3 Si 1.04 25.30 26.52 -169.99 -4.51 20.80 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.27 -6.19 6.05 56.52 0.34 -5.85 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.61 -16.94 8.75 -34.44 -0.30 -17.24 16 8 H 0.05 1.61 7.99 -52.49 -0.42 1.19 16 9 C 0.02 0.53 1.66 -91.77 -0.15 0.38 16 10 C -0.11 -2.29 4.78 -26.73 -0.13 -2.42 16 11 C -0.11 -1.94 5.14 -26.73 -0.14 -2.08 16 12 C 0.10 1.50 2.14 -67.71 -0.15 1.36 16 13 N -0.55 -7.18 3.96 -231.60 -0.92 -8.09 16 14 C 0.02 0.26 4.77 -4.58 -0.02 0.24 16 15 C 0.06 0.61 6.35 36.02 0.23 0.84 16 16 O -0.39 -4.50 10.92 -35.23 -0.38 -4.88 16 17 C 0.03 0.33 5.99 36.02 0.22 0.54 16 18 C 0.07 0.84 3.21 -27.14 -0.09 0.75 16 19 H 0.07 0.82 7.25 -51.93 -0.38 0.45 16 20 O -0.56 -6.01 13.28 -35.23 -0.47 -6.48 16 21 C 0.07 0.95 3.74 -6.44 -0.02 0.92 16 22 C -0.15 -2.43 4.46 -26.73 -0.12 -2.55 16 23 C -0.09 -1.88 5.15 -26.73 -0.14 -2.02 16 24 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 25 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.05 1.19 5.97 -51.93 -0.31 0.88 16 28 H 0.06 0.99 6.42 -51.93 -0.33 0.65 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.24 7.64 -51.93 -0.40 0.84 16 31 H 0.05 0.58 6.76 -51.93 -0.35 0.23 16 32 H 0.09 0.93 7.54 -51.93 -0.39 0.53 16 33 H 0.07 0.71 7.26 -51.93 -0.38 0.33 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.76 7.87 -51.92 -0.41 0.35 16 36 H 0.05 0.60 6.60 -51.93 -0.34 0.26 16 37 H 0.38 2.27 8.94 45.56 0.41 2.68 16 38 H 0.09 1.39 6.04 -51.93 -0.31 1.08 16 39 H 0.04 0.50 6.02 -51.93 -0.31 0.18 16 40 H 0.06 1.01 6.52 -51.93 -0.34 0.67 16 41 H 0.05 0.68 7.68 -51.93 -0.40 0.28 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 312.39 15.07 4.71 4.71 Total: -1.00 -30.72 312.39 -8.04 -38.76 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.32 Total: 2.36 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -0.90 Total: -20.29 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.16 Total: -34.97 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.85 Total: -11.36 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -4.51 Total: 20.80 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.72 -8.04 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.561 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds