Wall clock time and date at job start Mon Mar 30 2020 01:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99532 * 2 1 4 4 H 1.48502 * 109.46813 * 90.00388 * 3 2 1 5 5 H 1.48500 * 109.47156 * 210.00149 * 3 2 1 6 6 H 1.48496 * 109.47591 * 330.00447 * 3 2 1 7 7 C 1.37879 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99580 * 335.19852 * 7 2 1 9 9 C 1.50693 * 119.99957 * 155.19552 * 7 2 1 10 10 C 1.53002 * 109.47459 * 294.32939 * 9 7 2 11 11 C 1.52998 * 109.47190 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46879 * 60.00323 * 11 10 9 13 13 N 1.46906 * 109.46816 * 179.97438 * 12 11 10 14 14 C 1.47602 * 110.99928 * 196.18786 * 13 12 11 15 15 C 1.50728 * 108.45745 * 152.98459 * 14 13 12 16 16 O 1.43942 * 111.88365 * 93.37523 * 15 14 13 17 17 C 1.44225 * 116.11058 * 319.24759 * 16 15 14 18 18 C 1.50731 * 112.85136 * 318.68423 * 17 16 15 19 19 H 1.09005 * 109.52323 * 331.63286 * 18 17 16 20 20 O 1.42897 * 109.58655 * 211.46144 * 18 17 16 21 21 C 1.40461 * 111.00176 * 67.74231 * 13 12 11 22 22 C 1.52999 * 109.47128 * 299.99515 * 12 11 10 23 23 C 1.52998 * 109.47154 * 60.00241 * 22 12 11 24 24 H 0.97008 * 119.99945 * 174.94991 * 1 2 3 25 25 H 1.09007 * 109.47338 * 54.33139 * 9 7 2 26 26 H 1.08995 * 109.47015 * 299.99943 * 10 9 7 27 27 H 1.09003 * 109.46828 * 59.99882 * 10 9 7 28 28 H 1.08998 * 109.47687 * 299.99929 * 11 10 9 29 29 H 1.09003 * 109.46993 * 179.97438 * 11 10 9 30 30 H 1.08995 * 109.47519 * 59.99831 * 12 11 10 31 31 H 1.09003 * 109.64019 * 272.67930 * 14 13 12 32 32 H 1.09004 * 109.63832 * 33.29676 * 14 13 12 33 33 H 1.08994 * 109.00135 * 332.75855 * 15 14 13 34 34 H 1.09004 * 108.93919 * 213.94947 * 15 14 13 35 35 H 1.09009 * 108.80441 * 197.82237 * 17 16 15 36 36 H 1.08999 * 108.72275 * 79.49531 * 17 16 15 37 37 H 0.96697 * 114.00334 * 60.30669 * 20 18 17 38 38 H 1.09004 * 109.08087 * 308.32880 * 21 13 12 39 39 H 1.08998 * 109.08571 * 67.38024 * 21 13 12 40 40 H 1.09004 * 109.47439 * 300.00520 * 22 12 11 41 41 H 1.09000 * 109.47286 * 179.97438 * 22 12 11 42 42 H 1.08995 * 109.47478 * 180.02562 * 23 22 12 43 43 H 1.09007 * 109.47223 * 59.99857 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5465 1.4404 -0.7001 6 1 1.4464 2.6528 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.5393 -2.0864 0.3914 9 6 3.4072 -1.2539 -0.5481 10 6 3.3807 -0.9687 -2.0510 11 6 4.8049 -1.0289 -2.6068 12 6 5.3894 -2.4216 -2.3622 13 7 6.7567 -2.4795 -2.8963 14 6 7.2123 -3.8767 -3.0332 15 6 8.2416 -3.9375 -4.1326 16 8 9.5810 -3.8090 -3.6212 17 6 9.7701 -2.8353 -2.5743 18 6 9.0115 -1.5562 -2.8206 19 1 8.8927 -1.4040 -3.8934 20 8 9.7312 -0.4568 -2.2590 21 6 7.6215 -1.6565 -2.1563 22 6 5.4160 -2.7067 -0.8592 23 6 3.9918 -2.6465 -0.3034 24 1 -0.4850 -0.8369 -0.0740 25 1 4.0248 -0.5080 -0.0476 26 1 2.7633 -1.7145 -2.5515 27 1 2.9647 0.0236 -2.2253 28 1 5.4221 -0.2828 -2.1063 29 1 4.7860 -0.8262 -3.6776 30 1 4.7723 -3.1676 -2.8627 31 1 7.6573 -4.2105 -2.0958 32 1 6.3660 -4.5147 -3.2881 33 1 8.0531 -3.1302 -4.8402 34 1 8.1498 -4.8920 -4.6509 35 1 10.8326 -2.6043 -2.4969 36 1 9.4351 -3.2664 -1.6309 37 1 10.6154 -0.3345 -2.6308 38 1 7.1885 -0.6587 -2.0836 39 1 7.7354 -2.0692 -1.1539 40 1 6.0331 -1.9606 -0.3586 41 1 5.8319 -3.6991 -0.6850 42 1 4.0107 -2.8492 0.7674 43 1 3.3745 -3.3927 -0.8040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:41 Heat of formation + Delta-G solvation = -121.091424 kcal Electronic energy + Delta-G solvation = -22246.871138 eV Core-core repulsion = 19097.605062 eV Total energy + Delta-G solvation = -3149.266076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53982 -39.41813 -37.51630 -36.89749 -34.56246 -32.09980 -31.68852 -31.43081 -28.63682 -27.47703 -25.51959 -23.81826 -22.79257 -22.01947 -21.48345 -20.09730 -19.61440 -18.51100 -17.99159 -17.29135 -16.65389 -16.35482 -15.88605 -15.55775 -15.27671 -15.05742 -14.79459 -14.61445 -14.50512 -14.29927 -14.06871 -13.70003 -13.11316 -13.03543 -12.87867 -12.63865 -12.47013 -12.28444 -11.97211 -11.94497 -11.88694 -11.67892 -11.49586 -11.37854 -11.21228 -10.91614 -10.76637 -10.37826 -10.30587 -9.23617 -8.71712 -6.30197 1.47215 1.50541 1.71138 2.49367 2.50085 2.77133 3.02737 3.47059 3.66991 3.69180 3.80644 3.91287 4.05644 4.06392 4.21516 4.25980 4.40968 4.42570 4.51636 4.53234 4.58951 4.65250 4.71037 4.73044 4.80901 4.85798 4.90900 4.99743 5.05971 5.07125 5.17353 5.19530 5.31986 5.41848 5.61988 5.80530 5.98854 6.04525 6.07415 6.21789 6.34262 6.63668 6.80493 7.42730 8.62436 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030648 B = 0.004946 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.381711 B = 5659.756707 C = 6145.386342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.012 4.012 3 Si 1.077 2.923 4 H -0.276 1.276 5 H -0.245 1.245 6 H -0.287 1.287 7 C -0.611 4.611 8 H 0.015 0.985 9 C 0.019 3.981 10 C -0.104 4.104 11 C -0.103 4.103 12 C 0.105 3.895 13 N -0.544 5.544 14 C 0.024 3.976 15 C 0.061 3.939 16 O -0.402 6.402 17 C 0.033 3.967 18 C 0.086 3.914 19 H 0.072 0.928 20 O -0.572 6.572 21 C 0.069 3.931 22 C -0.137 4.137 23 C -0.090 4.090 24 H 0.254 0.746 25 H 0.018 0.982 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.047 0.953 37 H 0.400 0.600 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.852 -5.894 -9.009 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.211 4.211 3 Si 0.898 3.102 4 H -0.202 1.202 5 H -0.169 1.169 6 H -0.213 1.213 7 C -0.649 4.649 8 H 0.033 0.967 9 C 0.000 4.000 10 C -0.143 4.143 11 C -0.141 4.141 12 C -0.002 4.002 13 N -0.268 5.268 14 C -0.103 4.103 15 C -0.015 4.015 16 O -0.322 6.322 17 C -0.043 4.043 18 C 0.026 3.974 19 H 0.090 0.910 20 O -0.381 6.381 21 C -0.061 4.061 22 C -0.176 4.176 23 C -0.129 4.129 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.065 0.935 37 H 0.251 0.749 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 21.296 -4.144 -9.114 23.532 hybrid contribution -0.477 -2.016 1.009 2.304 sum 20.820 -6.161 -8.105 23.176 Atomic orbital electron populations 1.70943 1.08731 1.29612 1.47693 1.27046 0.95795 1.06051 0.92201 0.83612 0.76156 0.72265 0.78153 1.20163 1.16911 1.21304 1.22204 1.01444 0.95957 1.45279 0.96664 1.19015 0.93847 0.94260 0.92865 1.21708 0.95475 0.99684 0.97432 1.21582 0.95352 0.96202 1.00952 1.21599 0.87897 0.98096 0.92610 1.59265 1.02228 1.10637 1.54646 1.22559 0.99989 0.88616 0.99139 1.22579 0.80211 1.03546 0.95196 1.88264 1.29522 1.59078 1.55373 1.23156 1.01890 0.88715 0.90564 1.21973 0.91345 0.86362 0.97751 0.91028 1.86473 1.34084 1.49913 1.67599 1.20945 0.92069 0.98535 0.94537 1.22138 0.96902 1.01189 0.97377 1.21288 0.95002 0.97636 0.98959 0.93725 0.96410 0.93861 0.94437 0.92732 0.90898 0.89366 0.93444 0.87993 0.91739 0.86914 0.87169 0.93460 0.74856 0.90736 0.95419 0.92341 0.91515 0.94154 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.19 13.69 21.45 0.29 -58.89 16 2 C -0.01 -0.69 5.23 84.66 0.44 -0.25 16 3 Si 1.08 50.96 26.52 68.60 1.82 52.78 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.25 -10.40 6.05 99.48 0.60 -9.80 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 7 C -0.61 -35.07 8.75 25.60 0.22 -34.85 16 8 H 0.01 0.95 7.99 -2.91 -0.02 0.93 16 9 C 0.02 0.89 1.66 -11.54 -0.02 0.87 16 10 C -0.10 -4.34 4.78 30.59 0.15 -4.19 16 11 C -0.10 -3.34 5.14 30.59 0.16 -3.18 16 12 C 0.11 2.95 2.14 44.91 0.10 3.04 16 13 N -0.54 -12.69 3.96 -886.64 -3.51 -16.20 16 14 C 0.02 0.45 4.77 85.43 0.41 0.86 16 15 C 0.06 1.04 6.35 71.24 0.45 1.50 16 16 O -0.40 -7.97 10.92 -148.98 -1.63 -9.60 16 17 C 0.03 0.59 5.99 71.25 0.43 1.02 16 18 C 0.09 1.68 3.21 30.33 0.10 1.78 16 19 H 0.07 1.43 7.25 -2.38 -0.02 1.41 16 20 O -0.57 -10.78 13.28 -148.98 -1.98 -12.76 16 21 C 0.07 1.67 3.74 87.94 0.33 2.00 16 22 C -0.14 -4.17 4.46 30.59 0.14 -4.04 16 23 C -0.09 -3.56 5.15 30.60 0.16 -3.40 16 24 H 0.25 16.27 8.73 -92.70 -0.81 15.46 16 25 H 0.02 0.83 6.43 -2.38 -0.02 0.82 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.04 1.65 5.97 -2.39 -0.01 1.63 16 28 H 0.05 1.80 6.42 -2.39 -0.02 1.79 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.09 2.41 7.64 -2.39 -0.02 2.39 16 31 H 0.05 0.96 6.76 -2.39 -0.02 0.94 16 32 H 0.10 1.73 7.54 -2.38 -0.02 1.71 16 33 H 0.06 1.16 7.26 -2.39 -0.02 1.14 16 34 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 1.48 7.87 -2.38 -0.02 1.46 16 36 H 0.05 0.92 6.60 -2.39 -0.02 0.90 16 37 H 0.40 3.57 8.94 -74.06 -0.66 2.91 16 38 H 0.07 2.09 6.04 -2.38 -0.01 2.07 16 39 H 0.03 0.72 6.02 -2.39 -0.01 0.70 16 40 H 0.06 1.83 6.52 -2.39 -0.02 1.82 16 41 H 0.07 1.78 7.68 -2.39 -0.02 1.76 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -67.54 312.39 -1.75 -69.29 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.20 Total: 14.23 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 3.06 Total: -38.86 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -3.22 Total: -75.09 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -3.61 Total: -22.36 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 1.82 Total: 52.78 kcal Total: -67.54 -1.75 -69.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.802 kcal (2) G-P(sol) polarization free energy of solvation -67.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds