Wall clock time and date at job start Mon Mar 30 2020 01:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48500 * 109.47196 * 239.99965 * 3 2 1 5 5 H 1.48497 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46891 * 120.00122 * 3 2 1 7 7 C 1.37877 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00070 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99586 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47286 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47036 * 299.99919 * 11 10 9 13 13 N 1.46904 * 109.46932 * 179.97438 * 12 11 10 14 14 C 1.47901 * 110.99870 * 178.32749 * 13 12 11 15 15 C 1.54289 * 107.08577 * 214.00828 * 14 13 12 16 16 H 1.09005 * 110.47885 * 242.52929 * 15 14 13 17 17 O 1.42902 * 110.28378 * 120.26909 * 15 14 13 18 18 C 1.54594 * 104.99495 * 1.45377 * 15 14 13 19 19 H 1.09006 * 110.72087 * 263.31056 * 18 15 14 20 20 C 1.52998 * 110.73072 * 140.20129 * 18 15 14 21 21 O 1.42898 * 109.47208 * 68.84959 * 20 18 15 22 22 C 1.48527 * 111.00155 * 60.93324 * 13 12 11 23 23 C 1.52998 * 109.46771 * 60.00405 * 12 11 10 24 24 C 1.52998 * 109.47373 * 299.99951 * 9 7 2 25 25 H 0.97000 * 120.00080 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46968 * 60.00327 * 9 7 2 27 27 H 1.09001 * 109.46939 * 60.00388 * 10 9 7 28 28 H 1.08997 * 109.47598 * 300.00467 * 10 9 7 29 29 H 1.08999 * 109.47438 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47580 * 59.99825 * 11 10 9 31 31 H 1.08995 * 109.47106 * 299.99986 * 12 11 10 32 32 H 1.08999 * 109.91480 * 333.50905 * 14 13 12 33 33 H 1.09000 * 109.91834 * 94.60350 * 14 13 12 34 34 H 0.96704 * 113.99887 * 64.48305 * 17 15 14 35 35 H 1.09004 * 109.46771 * 308.85654 * 20 18 15 36 36 H 1.08998 * 109.47618 * 188.85397 * 20 18 15 37 37 H 0.96700 * 114.00063 * 180.02562 * 21 20 18 38 38 H 1.09001 * 110.66754 * 41.28171 * 22 13 12 39 39 H 1.09007 * 110.80748 * 278.22369 * 22 13 12 40 40 H 1.09001 * 109.47461 * 59.99532 * 23 12 11 41 41 H 1.09006 * 109.47247 * 179.97438 * 23 12 11 42 42 H 1.09001 * 109.47381 * 300.00123 * 24 9 7 43 43 H 1.08999 * 109.46758 * 60.00058 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0025 12 6 0.6013 -5.0690 1.2472 13 7 -0.1337 -6.3410 1.2462 14 6 -0.9656 -6.4734 2.4619 15 6 -0.9828 -7.9694 2.8387 16 1 -1.9974 -8.3644 2.7855 17 8 -0.4448 -8.1565 4.1493 18 6 -0.0833 -8.6574 1.7863 19 1 -0.6846 -9.0750 0.9787 20 6 0.7767 -9.7434 2.4358 21 8 -0.0575 -10.8267 2.8510 22 6 0.8005 -7.4955 1.2672 23 6 -0.3930 -3.9062 1.2483 24 6 0.3719 -2.5805 1.2490 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 2.8726 -3.6047 0.8878 28 1 2.8713 -3.6039 -0.8922 29 1 2.1887 -5.8155 -0.0029 30 1 0.8533 -5.0442 -0.8922 31 1 1.2283 -5.0119 2.1369 32 1 -0.5324 -5.8890 3.2736 33 1 -1.9795 -6.1297 2.2572 34 1 -0.9679 -7.7461 4.8515 35 1 1.2921 -9.3289 3.3023 36 1 1.5104 -10.1052 1.7154 37 1 0.4218 -11.5531 3.2726 38 1 1.6290 -7.3077 1.9501 39 1 1.1711 -7.7120 0.2652 40 1 -1.0200 -3.9633 0.3585 41 1 -1.0197 -3.9648 2.1384 42 1 0.9988 -2.5230 2.1388 43 1 -0.3364 -1.7520 1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:33 Heat of formation + Delta-G solvation = -112.565824 kcal Electronic energy + Delta-G solvation = -21691.171729 eV Core-core repulsion = 18542.275350 eV Total energy + Delta-G solvation = -3148.896379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.86626 -37.65996 -36.41253 -35.33251 -32.85467 -31.37529 -29.89297 -29.04724 -27.58659 -25.20294 -24.01962 -21.97510 -21.55278 -20.14323 -19.79144 -18.73119 -17.72174 -17.19354 -16.33358 -15.98314 -15.10785 -14.86200 -14.55847 -14.11117 -14.07761 -13.38750 -13.35593 -13.01346 -12.89500 -12.63202 -12.17530 -11.96312 -11.58851 -11.46937 -11.35778 -11.03259 -10.96050 -10.64962 -10.57758 -10.48069 -10.40126 -10.14545 -10.03087 -9.97823 -9.73861 -9.32101 -8.84450 -8.62523 -8.27010 -8.20520 -5.94247 -4.00379 3.33499 3.38206 3.40828 3.82050 4.17703 4.25050 4.46722 4.57214 4.71737 4.99271 5.17943 5.33035 5.34784 5.43124 5.46316 5.47256 5.57164 5.59441 5.70276 5.89560 5.94607 6.00600 6.10940 6.18380 6.34279 6.39659 6.46300 6.55737 6.69719 6.80135 6.97502 7.07178 7.16674 7.27124 7.39166 7.48061 7.56863 7.57973 7.78885 8.07030 8.19738 8.51565 9.03699 9.63945 11.11233 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046185 B = 0.003793 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.115459 B = 7380.206219 C = 7657.623850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.107 4.107 11 C -0.106 4.106 12 C 0.083 3.917 13 N -0.509 5.509 14 C 0.005 3.995 15 C 0.103 3.897 16 H 0.066 0.934 17 O -0.560 6.560 18 C -0.085 4.085 19 H 0.095 0.905 20 C 0.094 3.906 21 O -0.570 6.570 22 C 0.044 3.956 23 C -0.106 4.106 24 C -0.108 4.108 25 H 0.259 0.741 26 H 0.026 0.974 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.375 0.625 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.375 0.625 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.030 0.970 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 -17.465 6.103 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.146 4.146 11 C -0.144 4.144 12 C -0.025 4.025 13 N -0.233 5.233 14 C -0.124 4.124 15 C 0.043 3.957 16 H 0.084 0.916 17 O -0.365 6.365 18 C -0.104 4.104 19 H 0.114 0.886 20 C 0.016 3.984 21 O -0.375 6.375 22 C -0.084 4.084 23 C -0.144 4.144 24 C -0.146 4.146 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.222 0.778 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.221 0.779 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.454 -17.254 5.037 18.033 hybrid contribution 0.979 1.025 1.294 1.919 sum -0.475 -16.229 6.331 17.426 Atomic orbital electron populations 1.69864 1.05823 1.26349 1.50927 1.24964 0.94831 0.98934 0.95261 0.86718 0.79646 0.83429 0.78536 1.20356 1.21359 1.20399 1.21213 0.92820 0.90859 1.50278 0.92924 1.18645 0.92595 0.91389 0.94296 1.21620 0.98618 0.94316 1.00010 1.21592 0.97501 0.98057 0.97235 1.21932 0.94628 0.88268 0.97644 1.64860 1.20088 1.02369 1.36001 1.23697 0.99718 0.96044 0.92914 1.22598 0.96590 0.93487 0.82991 0.91641 1.86506 1.54659 1.79427 1.15908 1.22149 0.97146 0.94302 0.96789 0.88626 1.21889 0.91965 0.86812 0.97771 1.86451 1.38222 1.31256 1.81574 1.23142 0.94434 0.89832 1.00962 1.21680 0.97189 0.95118 1.00438 1.21617 0.99571 0.94738 0.98676 0.93061 0.95590 0.93690 0.93298 0.93856 0.91752 0.94637 0.92763 0.89979 0.77762 0.92475 0.94082 0.77871 0.93505 0.89671 0.92057 0.94253 0.95124 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 11.32 55.43 0.63 -24.85 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.16 8.56 -34.44 -0.29 -14.45 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.22 2.10 -91.77 -0.19 1.03 16 10 C -0.11 -2.25 5.14 -26.73 -0.14 -2.39 16 11 C -0.11 -1.90 5.08 -26.73 -0.14 -2.03 16 12 C 0.08 1.45 1.62 -67.71 -0.11 1.34 16 13 N -0.51 -7.69 5.11 -222.31 -1.14 -8.82 16 14 C 0.00 0.06 5.26 -2.60 -0.01 0.05 16 15 C 0.10 1.21 4.15 -25.22 -0.10 1.11 16 16 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 17 O -0.56 -6.32 11.47 -35.23 -0.40 -6.72 16 18 C -0.08 -1.01 3.30 -88.76 -0.29 -1.30 16 19 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 20 C 0.09 1.00 5.98 37.16 0.22 1.22 16 21 O -0.57 -6.05 13.55 -35.23 -0.48 -6.53 16 22 C 0.04 0.58 4.89 -1.90 -0.01 0.57 16 23 C -0.11 -2.08 5.13 -26.70 -0.14 -2.22 16 24 C -0.11 -2.53 4.99 -26.70 -0.13 -2.66 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.68 6.96 -51.93 -0.36 0.32 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 32 H 0.05 0.75 7.41 -51.93 -0.38 0.37 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.38 2.83 9.12 45.56 0.42 3.25 16 35 H 0.06 0.65 7.11 -51.93 -0.37 0.28 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.38 2.29 9.12 45.56 0.42 2.71 16 38 H 0.05 0.63 7.90 -51.93 -0.41 0.22 16 39 H 0.08 1.06 7.67 -51.93 -0.40 0.66 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.04 0.71 7.16 -51.93 -0.37 0.34 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 LS Contribution 327.80 15.07 4.94 4.94 Total: -1.00 -30.57 327.80 -8.87 -39.44 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.96 Total: 4.34 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -1.43 Total: -18.14 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: -0.51 Total: -33.67 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.88 Total: -13.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.57 -8.87 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.127 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds