Wall clock time and date at job start Mon Mar 30 2020 01:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48500 * 109.47196 * 239.99965 * 3 2 1 5 5 H 1.48497 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46891 * 120.00122 * 3 2 1 7 7 C 1.37877 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00070 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99586 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47286 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47036 * 299.99919 * 11 10 9 13 13 N 1.46904 * 109.46932 * 179.97438 * 12 11 10 14 14 C 1.47901 * 110.99870 * 178.32749 * 13 12 11 15 15 C 1.54289 * 107.08577 * 214.00828 * 14 13 12 16 16 H 1.09005 * 110.47885 * 242.52929 * 15 14 13 17 17 O 1.42902 * 110.28378 * 120.26909 * 15 14 13 18 18 C 1.54594 * 104.99495 * 1.45377 * 15 14 13 19 19 H 1.09006 * 110.72087 * 263.31056 * 18 15 14 20 20 C 1.52998 * 110.73072 * 140.20129 * 18 15 14 21 21 O 1.42898 * 109.47208 * 68.84959 * 20 18 15 22 22 C 1.48527 * 111.00155 * 60.93324 * 13 12 11 23 23 C 1.52998 * 109.46771 * 60.00405 * 12 11 10 24 24 C 1.52998 * 109.47373 * 299.99951 * 9 7 2 25 25 H 0.97000 * 120.00080 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46968 * 60.00327 * 9 7 2 27 27 H 1.09001 * 109.46939 * 60.00388 * 10 9 7 28 28 H 1.08997 * 109.47598 * 300.00467 * 10 9 7 29 29 H 1.08999 * 109.47438 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47580 * 59.99825 * 11 10 9 31 31 H 1.08995 * 109.47106 * 299.99986 * 12 11 10 32 32 H 1.08999 * 109.91480 * 333.50905 * 14 13 12 33 33 H 1.09000 * 109.91834 * 94.60350 * 14 13 12 34 34 H 0.96704 * 113.99887 * 64.48305 * 17 15 14 35 35 H 1.09004 * 109.46771 * 308.85654 * 20 18 15 36 36 H 1.08998 * 109.47618 * 188.85397 * 20 18 15 37 37 H 0.96700 * 114.00063 * 180.02562 * 21 20 18 38 38 H 1.09001 * 110.66754 * 41.28171 * 22 13 12 39 39 H 1.09007 * 110.80748 * 278.22369 * 22 13 12 40 40 H 1.09001 * 109.47461 * 59.99532 * 23 12 11 41 41 H 1.09006 * 109.47247 * 179.97438 * 23 12 11 42 42 H 1.09001 * 109.47381 * 300.00123 * 24 9 7 43 43 H 1.08999 * 109.46758 * 60.00058 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0025 12 6 0.6013 -5.0690 1.2472 13 7 -0.1337 -6.3410 1.2462 14 6 -0.9656 -6.4734 2.4619 15 6 -0.9828 -7.9694 2.8387 16 1 -1.9974 -8.3644 2.7855 17 8 -0.4448 -8.1565 4.1493 18 6 -0.0833 -8.6574 1.7863 19 1 -0.6846 -9.0750 0.9787 20 6 0.7767 -9.7434 2.4358 21 8 -0.0575 -10.8267 2.8510 22 6 0.8005 -7.4955 1.2672 23 6 -0.3930 -3.9062 1.2483 24 6 0.3719 -2.5805 1.2490 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 2.8726 -3.6047 0.8878 28 1 2.8713 -3.6039 -0.8922 29 1 2.1887 -5.8155 -0.0029 30 1 0.8533 -5.0442 -0.8922 31 1 1.2283 -5.0119 2.1369 32 1 -0.5324 -5.8890 3.2736 33 1 -1.9795 -6.1297 2.2572 34 1 -0.9679 -7.7461 4.8515 35 1 1.2921 -9.3289 3.3023 36 1 1.5104 -10.1052 1.7154 37 1 0.4218 -11.5531 3.2726 38 1 1.6290 -7.3077 1.9501 39 1 1.1711 -7.7120 0.2652 40 1 -1.0200 -3.9633 0.3585 41 1 -1.0197 -3.9648 2.1384 42 1 0.9988 -2.5230 2.1388 43 1 -0.3364 -1.7520 1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:33 Heat of formation + Delta-G solvation = -136.720745 kcal Electronic energy + Delta-G solvation = -21692.219165 eV Core-core repulsion = 18542.275350 eV Total energy + Delta-G solvation = -3149.943815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98740 -39.03448 -37.28376 -36.52937 -34.63324 -32.73707 -31.51700 -30.41891 -28.91798 -26.65610 -25.43673 -23.29873 -23.07793 -21.54898 -20.88784 -20.40384 -18.61254 -18.37777 -17.99575 -17.15942 -16.63308 -16.08749 -15.84173 -15.38955 -15.19954 -14.79962 -14.70820 -14.44471 -14.22747 -14.08569 -13.66548 -13.21522 -13.05406 -12.94349 -12.75342 -12.60019 -12.42647 -12.32192 -12.05634 -11.99297 -11.83460 -11.61240 -11.44981 -11.19897 -10.96306 -10.77421 -10.70914 -10.48437 -10.35095 -9.39840 -8.06236 -6.20505 1.41417 1.42433 1.50103 2.44033 2.81323 3.19734 3.25718 3.40660 3.60504 3.78537 3.95372 4.02400 4.15600 4.27649 4.40639 4.46814 4.54846 4.56445 4.63390 4.65092 4.69790 4.73008 4.81611 4.82632 4.89528 4.95100 4.98652 5.07517 5.16243 5.26566 5.32745 5.40160 5.47202 5.61643 5.69631 5.91615 6.04354 6.08353 6.22365 6.42536 6.83617 6.92139 6.97104 7.47370 8.97440 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046185 B = 0.003793 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.115459 B = 7380.206219 C = 7657.623850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.051 0.949 9 C 0.045 3.955 10 C -0.100 4.100 11 C -0.098 4.098 12 C 0.094 3.906 13 N -0.517 5.517 14 C 0.004 3.996 15 C 0.110 3.890 16 H 0.073 0.927 17 O -0.568 6.568 18 C -0.086 4.086 19 H 0.095 0.905 20 C 0.099 3.901 21 O -0.586 6.586 22 C 0.045 3.955 23 C -0.095 4.095 24 C -0.099 4.099 25 H 0.260 0.740 26 H -0.008 1.008 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.391 0.609 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.394 0.606 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.024 0.976 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 -18.956 6.683 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.139 4.139 11 C -0.135 4.135 12 C -0.014 4.014 13 N -0.241 5.241 14 C -0.124 4.124 15 C 0.050 3.950 16 H 0.091 0.909 17 O -0.376 6.376 18 C -0.105 4.105 19 H 0.114 0.886 20 C 0.021 3.979 21 O -0.394 6.394 22 C -0.082 4.082 23 C -0.133 4.133 24 C -0.137 4.137 25 H 0.069 0.931 26 H 0.011 0.989 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.240 0.760 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.243 0.757 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.766 -18.768 5.635 19.610 hybrid contribution 0.741 1.470 1.134 1.998 sum -0.026 -17.298 6.769 18.575 Atomic orbital electron populations 1.70013 1.07130 1.27044 1.51421 1.25741 0.95671 1.02315 0.94934 0.85717 0.78464 0.79312 0.78788 1.19720 1.20985 1.19694 1.21618 0.93015 0.92446 1.50427 0.93122 1.18623 0.93067 0.92302 0.93322 1.21485 0.97884 0.94442 1.00054 1.21490 0.97744 0.97127 0.97182 1.21662 0.93821 0.88762 0.97154 1.64794 1.20409 1.01776 1.37159 1.23747 0.99282 0.97382 0.92001 1.22497 0.97024 0.92123 0.83356 0.90888 1.86476 1.55346 1.79628 1.16136 1.22146 0.97096 0.94324 0.96893 0.88645 1.21791 0.91749 0.86604 0.97747 1.86395 1.39135 1.31933 1.81919 1.23180 0.94188 0.89335 1.01535 1.21491 0.97258 0.94126 1.00452 1.21394 0.98768 0.95898 0.97687 0.93126 0.98936 0.93587 0.93234 0.90968 0.92452 0.95041 0.93312 0.89885 0.75959 0.93256 0.92449 0.75675 0.93677 0.88829 0.93356 0.92847 0.95741 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 2 C 0.01 0.66 5.30 84.66 0.45 1.11 16 3 Si 0.95 44.14 29.54 68.60 2.03 46.16 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.54 -30.16 8.56 25.60 0.22 -29.94 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.31 2.10 -11.54 -0.02 2.28 16 10 C -0.10 -4.18 5.14 30.59 0.16 -4.02 16 11 C -0.10 -3.37 5.08 30.59 0.16 -3.21 16 12 C 0.09 3.18 1.62 44.92 0.07 3.25 16 13 N -0.52 -14.73 5.11 -857.26 -4.38 -19.11 16 14 C 0.00 0.11 5.26 86.55 0.46 0.56 16 15 C 0.11 2.34 4.15 31.57 0.13 2.48 16 16 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 17 O -0.57 -11.53 11.47 -148.98 -1.71 -13.24 16 18 C -0.09 -1.83 3.30 -9.59 -0.03 -1.86 16 19 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 20 C 0.10 1.84 5.98 71.98 0.43 2.28 16 21 O -0.59 -10.90 13.55 -148.98 -2.02 -12.92 16 22 C 0.05 1.07 4.89 86.65 0.42 1.50 16 23 C -0.10 -3.74 5.13 30.61 0.16 -3.58 16 24 C -0.10 -4.76 4.99 30.61 0.15 -4.61 16 25 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.10 6.96 -2.39 -0.02 2.08 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 32 H 0.05 1.27 7.41 -2.39 -0.02 1.26 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.39 5.04 9.12 -74.05 -0.68 4.37 16 35 H 0.05 1.00 7.11 -2.38 -0.02 0.98 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.39 3.78 9.12 -74.06 -0.68 3.10 16 38 H 0.04 1.10 7.90 -2.39 -0.02 1.09 16 39 H 0.09 2.06 7.67 -2.38 -0.02 2.04 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 1.92 7.16 -2.38 -0.02 1.90 16 42 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 Total: -1.00 -65.65 327.80 -3.44 -69.09 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.36 Total: 17.29 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 2.75 Total: -33.76 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -4.14 Total: -72.63 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -3.73 Total: -26.16 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -65.65 -3.44 -69.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.626 kcal (2) G-P(sol) polarization free energy of solvation -65.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds