Wall clock time and date at job start Mon Mar 30 2020 01:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99734 * 2 1 4 4 H 1.48507 * 109.46867 * 85.01754 * 3 2 1 5 5 H 1.48488 * 109.47478 * 325.01510 * 3 2 1 6 6 H 1.48500 * 109.47012 * 205.01090 * 3 2 1 7 7 C 1.37874 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00412 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99921 * 0.02887 * 7 2 1 10 10 C 1.52995 * 109.47717 * 295.13986 * 9 7 2 11 11 C 1.52999 * 109.47449 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47065 * 60.00019 * 11 10 9 13 13 N 1.46894 * 109.47033 * 180.02562 * 12 11 10 14 14 C 1.47909 * 110.99906 * 295.61650 * 13 12 11 15 15 C 1.53997 * 107.05609 * 214.15818 * 14 13 12 16 16 H 1.08990 * 110.31161 * 120.14462 * 15 14 13 17 17 O 1.42900 * 110.30500 * 242.30740 * 15 14 13 18 18 C 1.54593 * 105.13921 * 1.22141 * 15 14 13 19 19 H 1.08998 * 110.72457 * 263.41912 * 18 15 14 20 20 C 1.53004 * 110.72038 * 140.31780 * 18 15 14 21 21 O 1.42905 * 109.47234 * 66.45415 * 20 18 15 22 22 C 1.48536 * 111.00319 * 178.22317 * 13 12 11 23 23 C 1.53001 * 109.46842 * 299.99982 * 12 11 10 24 24 C 1.52994 * 109.47456 * 60.00425 * 23 12 11 25 25 H 0.97002 * 120.00322 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46804 * 55.14405 * 9 7 2 27 27 H 1.09006 * 109.46857 * 300.00316 * 10 9 7 28 28 H 1.09001 * 109.47334 * 59.99478 * 10 9 7 29 29 H 1.08996 * 109.46697 * 299.99778 * 11 10 9 30 30 H 1.09002 * 109.46735 * 179.97438 * 11 10 9 31 31 H 1.08997 * 109.47105 * 59.99664 * 12 11 10 32 32 H 1.08993 * 109.91466 * 333.50812 * 14 13 12 33 33 H 1.09000 * 109.91289 * 94.80552 * 14 13 12 34 34 H 0.96697 * 114.00628 * 298.54926 * 17 15 14 35 35 H 1.08994 * 109.47360 * 186.45079 * 20 18 15 36 36 H 1.09001 * 109.46977 * 306.45362 * 20 18 15 37 37 H 0.96695 * 114.00372 * 179.97438 * 21 20 18 38 38 H 1.09000 * 110.66127 * 278.16025 * 22 13 12 39 39 H 1.09000 * 110.66414 * 41.27896 * 22 13 12 40 40 H 1.08997 * 109.47011 * 299.99740 * 23 12 11 41 41 H 1.09002 * 109.46855 * 180.02562 * 23 12 11 42 42 H 1.08993 * 109.47503 * 180.02562 * 24 23 12 43 43 H 1.09006 * 109.47527 * 59.99502 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3912 2.1072 1.3949 5 1 1.5032 2.6200 -0.8027 6 1 3.5953 1.4121 -0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0018 10 6 0.4647 -2.6355 1.3036 11 6 -0.3008 -3.9602 1.3020 12 6 0.6886 -5.1207 1.1790 13 7 -0.0464 -6.3926 1.1769 14 6 -0.7363 -6.6083 2.4673 15 6 -0.7127 -8.1229 2.7445 16 1 -0.1906 -8.3285 3.6789 17 8 -2.0445 -8.6385 2.7955 18 6 0.0561 -8.7394 1.5533 19 1 -0.6364 -9.1059 0.7956 20 6 0.9799 -9.8628 2.0284 21 8 0.1937 -10.9507 2.5187 22 6 0.8800 -7.5425 1.0159 23 6 1.4749 -4.9844 -0.1264 24 6 2.2404 -3.6598 -0.1248 25 1 -0.4851 0.8400 0.0004 26 1 0.5611 -2.5195 -0.8454 27 1 1.1547 -2.6151 2.1472 28 1 -0.2405 -1.8089 1.3910 29 1 -0.9908 -3.9800 0.4584 30 1 -0.8606 -4.0574 2.2322 31 1 1.3786 -5.1008 2.0225 32 1 -0.2121 -6.0772 3.2618 33 1 -1.7666 -6.2590 2.4004 34 1 -2.5882 -8.2548 3.4971 35 1 1.5940 -10.2048 1.1955 36 1 1.6234 -9.4911 2.8258 37 1 0.7148 -11.7005 2.8371 38 1 1.1318 -7.6894 -0.0344 39 1 1.7809 -7.3970 1.6118 40 1 0.7849 -5.0044 -0.9699 41 1 2.1794 -5.8115 -0.2142 42 1 2.8002 -3.5624 -1.0549 43 1 2.9305 -3.6398 0.7188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:38 Heat of formation + Delta-G solvation = -114.067376 kcal Electronic energy + Delta-G solvation = -21592.367948 eV Core-core repulsion = 18443.406457 eV Total energy + Delta-G solvation = -3148.961491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.86473 -37.66297 -36.57250 -35.39383 -32.88623 -31.44405 -29.93508 -29.01532 -27.56913 -25.25714 -24.00362 -21.99596 -21.64471 -20.28135 -19.82419 -18.76264 -17.51534 -17.32315 -16.32694 -15.91903 -15.78525 -14.72520 -14.48117 -14.09592 -13.74584 -13.56272 -13.43659 -13.09164 -12.86299 -12.49404 -12.31232 -12.13381 -11.60143 -11.48308 -11.24232 -11.08904 -10.99208 -10.77839 -10.67381 -10.49486 -10.41787 -10.16913 -10.15942 -9.94396 -9.79772 -9.31629 -8.82862 -8.65394 -8.29026 -8.22204 -5.96000 -4.00799 3.31255 3.38673 3.41842 3.80361 4.07333 4.16328 4.46403 4.55828 4.74455 4.94494 5.07433 5.18048 5.30183 5.34698 5.36608 5.43343 5.46604 5.56366 5.60033 5.83945 5.88661 5.98312 6.09025 6.16038 6.31857 6.37207 6.43695 6.53012 6.66594 6.78738 6.95666 7.04897 7.13639 7.23980 7.37575 7.40775 7.54295 7.63899 7.77981 8.05155 8.13482 8.50188 9.04230 9.63551 11.11266 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.045187 B = 0.003766 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.496252 B = 7432.672107 C = 7834.824133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.104 4.104 11 C -0.106 4.106 12 C 0.082 3.918 13 N -0.507 5.507 14 C 0.004 3.996 15 C 0.107 3.893 16 H 0.058 0.942 17 O -0.553 6.553 18 C -0.087 4.087 19 H 0.100 0.900 20 C 0.085 3.915 21 O -0.565 6.565 22 C 0.045 3.955 23 C -0.107 4.107 24 C -0.107 4.107 25 H 0.259 0.741 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.374 0.626 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.375 0.625 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 -17.664 6.157 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.144 4.144 12 C -0.026 4.026 13 N -0.231 5.231 14 C -0.124 4.124 15 C 0.047 3.953 16 H 0.076 0.924 17 O -0.358 6.358 18 C -0.106 4.106 19 H 0.119 0.881 20 C 0.006 3.994 21 O -0.369 6.369 22 C -0.083 4.083 23 C -0.145 4.145 24 C -0.145 4.145 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.220 0.780 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.221 0.779 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.156 -17.438 5.043 18.153 hybrid contribution 1.380 1.006 1.405 2.211 sum 1.537 -16.432 6.448 17.719 Atomic orbital electron populations 1.69916 1.05826 1.26284 1.50859 1.24971 0.94821 0.98947 0.95272 0.86656 0.80003 0.83916 0.77868 1.20881 1.21274 1.19960 1.21236 0.92830 0.90804 1.50274 0.92884 1.18662 0.93014 0.91378 0.93976 1.21569 0.99118 0.94440 0.99131 1.21648 0.97443 0.94964 1.00319 1.21949 0.94578 0.88421 0.97608 1.64828 1.25935 1.01874 1.30472 1.23680 1.01276 0.95818 0.91655 1.22619 0.83905 0.91437 0.97331 0.92438 1.86592 1.23426 1.67709 1.58029 1.22097 0.96926 0.93754 0.97810 0.88136 1.22141 0.92560 0.87426 0.97240 1.86594 1.37107 1.28761 1.84464 1.23140 0.94180 0.89379 1.01641 1.21616 0.98117 0.98080 0.96715 1.21621 0.98608 0.94274 1.00032 0.93124 0.95198 0.95032 0.89757 0.91921 0.94229 0.94665 0.93359 0.89546 0.77960 0.93131 0.93778 0.77878 0.89264 0.93585 0.91671 0.93804 0.93207 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 11.68 55.43 0.65 -24.89 16 2 C 0.06 1.69 5.32 -17.82 -0.09 1.60 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.07 8.50 -34.44 -0.29 -14.36 16 8 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 9 C 0.05 1.19 2.01 -91.77 -0.18 1.00 16 10 C -0.10 -2.41 5.03 -26.73 -0.13 -2.55 16 11 C -0.11 -2.05 5.18 -26.73 -0.14 -2.19 16 12 C 0.08 1.40 1.64 -67.72 -0.11 1.29 16 13 N -0.51 -7.64 5.11 -222.50 -1.14 -8.78 16 14 C 0.00 0.06 5.33 -2.75 -0.01 0.04 16 15 C 0.11 1.29 3.79 -25.37 -0.10 1.20 16 16 H 0.06 0.64 7.80 -51.93 -0.41 0.24 16 17 O -0.55 -6.98 13.26 -35.23 -0.47 -7.44 16 18 C -0.09 -1.04 3.09 -88.76 -0.27 -1.31 16 19 H 0.10 1.39 8.08 -51.93 -0.42 0.97 16 20 C 0.08 0.80 6.37 37.16 0.24 1.04 16 21 O -0.56 -5.79 13.50 -35.23 -0.48 -6.26 16 22 C 0.04 0.56 4.78 -1.90 -0.01 0.55 16 23 C -0.11 -1.89 5.01 -26.73 -0.13 -2.02 16 24 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 2.21 6.47 -51.93 -0.34 1.87 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.04 0.71 7.32 -51.93 -0.38 0.33 16 31 H 0.04 0.61 7.97 -51.93 -0.41 0.20 16 32 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 33 H 0.09 1.18 7.96 -51.93 -0.41 0.77 16 34 H 0.37 3.10 9.11 45.56 0.41 3.51 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 37 H 0.38 1.96 9.12 45.56 0.42 2.38 16 38 H 0.09 1.08 7.65 -51.93 -0.40 0.68 16 39 H 0.05 0.54 7.92 -51.93 -0.41 0.13 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.04 0.67 6.89 -51.93 -0.36 0.31 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -31.42 330.68 -8.88 -40.29 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.02 Total: 3.87 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -1.39 Total: -18.06 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: -0.49 Total: -33.66 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.94 Total: -13.71 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.42 -8.88 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.772 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds