Wall clock time and date at job start Mon Mar 30 2020 01:24:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86800 * 119.99734 * 2 1
4 4 H 1.48507 * 109.46867 * 85.01754 * 3 2 1
5 5 H 1.48488 * 109.47478 * 325.01510 * 3 2 1
6 6 H 1.48500 * 109.47012 * 205.01090 * 3 2 1
7 7 C 1.37874 * 120.00109 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00412 * 180.02562 * 7 2 1
9 9 C 1.50702 * 119.99921 * 0.02887 * 7 2 1
10 10 C 1.52995 * 109.47717 * 295.13986 * 9 7 2
11 11 C 1.52999 * 109.47449 * 179.97438 * 10 9 7
12 12 C 1.52999 * 109.47065 * 60.00019 * 11 10 9
13 13 N 1.46894 * 109.47033 * 180.02562 * 12 11 10
14 14 C 1.47909 * 110.99906 * 295.61650 * 13 12 11
15 15 C 1.53997 * 107.05609 * 214.15818 * 14 13 12
16 16 H 1.08990 * 110.31161 * 120.14462 * 15 14 13
17 17 O 1.42900 * 110.30500 * 242.30740 * 15 14 13
18 18 C 1.54593 * 105.13921 * 1.22141 * 15 14 13
19 19 H 1.08998 * 110.72457 * 263.41912 * 18 15 14
20 20 C 1.53004 * 110.72038 * 140.31780 * 18 15 14
21 21 O 1.42905 * 109.47234 * 66.45415 * 20 18 15
22 22 C 1.48536 * 111.00319 * 178.22317 * 13 12 11
23 23 C 1.53001 * 109.46842 * 299.99982 * 12 11 10
24 24 C 1.52994 * 109.47456 * 60.00425 * 23 12 11
25 25 H 0.97002 * 120.00322 * 359.97438 * 1 2 3
26 26 H 1.09004 * 109.46804 * 55.14405 * 9 7 2
27 27 H 1.09006 * 109.46857 * 300.00316 * 10 9 7
28 28 H 1.09001 * 109.47334 * 59.99478 * 10 9 7
29 29 H 1.08996 * 109.46697 * 299.99778 * 11 10 9
30 30 H 1.09002 * 109.46735 * 179.97438 * 11 10 9
31 31 H 1.08997 * 109.47105 * 59.99664 * 12 11 10
32 32 H 1.08993 * 109.91466 * 333.50812 * 14 13 12
33 33 H 1.09000 * 109.91289 * 94.80552 * 14 13 12
34 34 H 0.96697 * 114.00628 * 298.54926 * 17 15 14
35 35 H 1.08994 * 109.47360 * 186.45079 * 20 18 15
36 36 H 1.09001 * 109.46977 * 306.45362 * 20 18 15
37 37 H 0.96695 * 114.00372 * 179.97438 * 21 20 18
38 38 H 1.09000 * 110.66127 * 278.16025 * 22 13 12
39 39 H 1.09000 * 110.66414 * 41.27896 * 22 13 12
40 40 H 1.08997 * 109.47011 * 299.99740 * 23 12 11
41 41 H 1.09002 * 109.46855 * 180.02562 * 23 12 11
42 42 H 1.08993 * 109.47503 * 180.02562 * 24 23 12
43 43 H 1.09006 * 109.47527 * 59.99502 * 24 23 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.3912 2.1072 1.3949
5 1 1.5032 2.6200 -0.8027
6 1 3.5953 1.4121 -0.5919
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4991 -0.0018
10 6 0.4647 -2.6355 1.3036
11 6 -0.3008 -3.9602 1.3020
12 6 0.6886 -5.1207 1.1790
13 7 -0.0464 -6.3926 1.1769
14 6 -0.7363 -6.6083 2.4673
15 6 -0.7127 -8.1229 2.7445
16 1 -0.1906 -8.3285 3.6789
17 8 -2.0445 -8.6385 2.7955
18 6 0.0561 -8.7394 1.5533
19 1 -0.6364 -9.1059 0.7956
20 6 0.9799 -9.8628 2.0284
21 8 0.1937 -10.9507 2.5187
22 6 0.8800 -7.5425 1.0159
23 6 1.4749 -4.9844 -0.1264
24 6 2.2404 -3.6598 -0.1248
25 1 -0.4851 0.8400 0.0004
26 1 0.5611 -2.5195 -0.8454
27 1 1.1547 -2.6151 2.1472
28 1 -0.2405 -1.8089 1.3910
29 1 -0.9908 -3.9800 0.4584
30 1 -0.8606 -4.0574 2.2322
31 1 1.3786 -5.1008 2.0225
32 1 -0.2121 -6.0772 3.2618
33 1 -1.7666 -6.2590 2.4004
34 1 -2.5882 -8.2548 3.4971
35 1 1.5940 -10.2048 1.1955
36 1 1.6234 -9.4911 2.8258
37 1 0.7148 -11.7005 2.8371
38 1 1.1318 -7.6894 -0.0344
39 1 1.7809 -7.3970 1.6118
40 1 0.7849 -5.0044 -0.9699
41 1 2.1794 -5.8115 -0.2142
42 1 2.8002 -3.5624 -1.0549
43 1 2.9305 -3.6398 0.7188
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001173331336.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:24:37
Heat of formation + Delta-G solvation = -139.465425 kcal
Electronic energy + Delta-G solvation = -21593.469290 eV
Core-core repulsion = 18443.406457 eV
Total energy + Delta-G solvation = -3150.062833 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.97444 -39.00503 -37.39187 -36.61924 -34.65157 -32.79746 -31.53966 -30.39522
-28.85589 -26.66676 -25.39417 -23.27626 -23.13357 -21.62005 -20.96673 -20.41734
-18.44818 -18.25683 -18.14281 -17.13373 -16.79262 -16.50641 -15.69254 -15.23558
-14.91382 -14.79093 -14.72838 -14.60623 -14.27661 -13.97445 -13.52844 -13.35279
-13.15521 -13.00066 -12.82430 -12.61134 -12.37135 -12.20828 -12.10319 -11.93322
-11.84575 -11.64083 -11.61620 -11.18002 -10.98803 -10.80443 -10.68497 -10.49521
-10.36408 -9.36477 -8.07818 -6.20368 1.40483 1.41649 1.52040 2.44161
2.84965 3.17079 3.20671 3.33309 3.59118 3.87006 3.95803 4.04899
4.11774 4.25967 4.40708 4.42051 4.47534 4.51184 4.58386 4.64532
4.70174 4.71249 4.82065 4.82470 4.88281 4.94176 4.97901 5.00933
5.17432 5.21852 5.33830 5.39612 5.47696 5.62457 5.68396 5.92585
6.04158 6.10422 6.19365 6.42153 6.89032 6.93740 6.97103 7.47646
8.98232
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.045187 B = 0.003766 C = 0.003573
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 619.496252 B = 7432.672107 C = 7834.824133
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C 0.010 3.990
3 Si 0.951 3.049
4 H -0.276 1.276
5 H -0.285 1.285
6 H -0.267 1.267
7 C -0.533 4.533
8 H 0.052 0.948
9 C 0.044 3.956
10 C -0.095 4.095
11 C -0.096 4.096
12 C 0.094 3.906
13 N -0.523 5.523
14 C 0.004 3.996
15 C 0.111 3.889
16 H 0.073 0.927
17 O -0.572 6.572
18 C -0.087 4.087
19 H 0.076 0.924
20 C 0.088 3.912
21 O -0.588 6.588
22 C 0.046 3.954
23 C -0.099 4.099
24 C -0.100 4.100
25 H 0.259 0.741
26 H -0.008 1.008
27 H 0.031 0.969
28 H 0.047 0.953
29 H 0.042 0.958
30 H 0.053 0.947
31 H 0.042 0.958
32 H 0.053 0.947
33 H 0.078 0.922
34 H 0.390 0.610
35 H 0.067 0.933
36 H 0.060 0.940
37 H 0.396 0.604
38 H 0.093 0.907
39 H 0.062 0.938
40 H 0.052 0.948
41 H 0.076 0.924
42 H 0.048 0.952
43 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.458 -19.154 7.099 20.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.188 4.188
3 Si 0.777 3.223
4 H -0.202 1.202
5 H -0.211 1.211
6 H -0.192 1.192
7 C -0.571 4.571
8 H 0.070 0.930
9 C 0.025 3.975
10 C -0.133 4.133
11 C -0.134 4.134
12 C -0.015 4.015
13 N -0.248 5.248
14 C -0.124 4.124
15 C 0.051 3.949
16 H 0.091 0.909
17 O -0.379 6.379
18 C -0.106 4.106
19 H 0.095 0.905
20 C 0.010 3.990
21 O -0.396 6.396
22 C -0.081 4.081
23 C -0.137 4.137
24 C -0.138 4.138
25 H 0.068 0.932
26 H 0.010 0.990
27 H 0.050 0.950
28 H 0.066 0.934
29 H 0.061 0.939
30 H 0.072 0.928
31 H 0.060 0.940
32 H 0.072 0.928
33 H 0.096 0.904
34 H 0.240 0.760
35 H 0.085 0.915
36 H 0.079 0.921
37 H 0.245 0.755
38 H 0.112 0.888
39 H 0.080 0.920
40 H 0.070 0.930
41 H 0.095 0.905
42 H 0.067 0.933
43 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 1.669 -18.953 5.999 19.949
hybrid contribution 0.860 1.449 1.108 2.016
sum 2.529 -17.504 7.107 19.060
Atomic orbital electron populations
1.70062 1.07234 1.26994 1.51601 1.25761 0.95632 1.02404 0.95022
0.85644 0.78897 0.79700 0.78028 1.20226 1.21102 1.19162 1.21643
0.93035 0.92338 1.50129 0.92971 1.18640 0.93248 0.92420 0.93155
1.21344 0.98364 0.95373 0.98257 1.21466 0.97420 0.94283 1.00199
1.21687 0.93766 0.88580 0.97421 1.64730 1.26599 1.01701 1.31736
1.23703 1.00636 0.97105 0.90981 1.22633 0.83938 0.90231 0.98067
0.90879 1.86555 1.24028 1.68131 1.59203 1.22071 0.96935 0.94450
0.97149 0.90520 1.22114 0.91877 0.86654 0.98378 1.86531 1.38559
1.29827 1.84728 1.23191 0.94253 0.88333 1.02346 1.21516 0.98263
0.97321 0.96603 1.21481 0.97853 0.94259 1.00200 0.93200 0.98989
0.95041 0.93430 0.93869 0.92835 0.94032 0.92848 0.90414 0.76046
0.91520 0.92147 0.75463 0.88824 0.91976 0.92955 0.90502 0.93314
0.93120
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.31 11.68 21.45 0.25 -54.06 16
2 C 0.01 0.57 5.32 84.65 0.45 1.02 16
3 Si 0.95 44.07 29.54 68.60 2.03 46.09 16
4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16
5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16
6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
7 C -0.53 -29.70 8.50 25.60 0.22 -29.48 16
8 H 0.05 2.84 7.75 -2.91 -0.02 2.82 16
9 C 0.04 2.21 2.01 -11.54 -0.02 2.19 16
10 C -0.09 -4.49 5.03 30.59 0.15 -4.34 16
11 C -0.10 -3.73 5.18 30.59 0.16 -3.57 16
12 C 0.09 3.05 1.64 44.92 0.07 3.12 16
13 N -0.52 -14.85 5.11 -857.87 -4.38 -19.23 16
14 C 0.00 0.10 5.33 86.45 0.46 0.56 16
15 C 0.11 2.44 3.79 31.47 0.12 2.56 16
16 H 0.07 1.40 7.80 -2.39 -0.02 1.38 16
17 O -0.57 -13.55 13.26 -148.98 -1.97 -15.52 16
18 C -0.09 -1.88 3.09 -9.59 -0.03 -1.91 16
19 H 0.08 2.03 8.08 -2.39 -0.02 2.02 16
20 C 0.09 1.39 6.37 71.98 0.46 1.85 16
21 O -0.59 -10.51 13.50 -148.98 -2.01 -12.52 16
22 C 0.05 1.03 4.78 86.65 0.41 1.44 16
23 C -0.10 -3.33 5.01 30.59 0.15 -3.18 16
24 C -0.10 -4.04 5.15 30.59 0.16 -3.89 16
25 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16
26 H -0.01 -0.47 8.14 -2.38 -0.02 -0.48 16
27 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16
28 H 0.05 2.59 6.47 -2.39 -0.02 2.57 16
29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16
30 H 0.05 1.91 7.32 -2.39 -0.02 1.89 16
31 H 0.04 1.33 7.97 -2.39 -0.02 1.31 16
32 H 0.05 1.28 7.65 -2.39 -0.02 1.26 16
33 H 0.08 2.05 7.96 -2.39 -0.02 2.03 16
34 H 0.39 5.88 9.11 -74.06 -0.67 5.21 16
35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
36 H 0.06 0.77 8.08 -2.39 -0.02 0.75 16
37 H 0.40 3.04 9.12 -74.06 -0.68 2.36 16
38 H 0.09 1.99 7.65 -2.39 -0.02 1.98 16
39 H 0.06 1.21 7.92 -2.39 -0.02 1.19 16
40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
41 H 0.08 2.10 6.89 -2.39 -0.02 2.08 16
42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16
43 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16
Total: -1.00 -68.51 330.68 -3.68 -72.20
By element:
Atomic # 1 Polarization: 17.03 SS G_CDS: -0.36 Total: 16.67 kcal
Atomic # 6 Polarization: -36.40 SS G_CDS: 2.76 Total: -33.63 kcal
Atomic # 7 Polarization: -69.16 SS G_CDS: -4.13 Total: -73.29 kcal
Atomic # 8 Polarization: -24.06 SS G_CDS: -3.99 Total: -28.04 kcal
Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal
Total: -68.51 -3.68 -72.20 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173331336.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.268 kcal
(2) G-P(sol) polarization free energy of solvation -68.513 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.781 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.465 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds