Wall clock time and date at job start Mon Mar 30 2020 01:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99734 * 2 1 4 4 H 1.48507 * 109.46867 * 85.01754 * 3 2 1 5 5 H 1.48488 * 109.47478 * 325.01510 * 3 2 1 6 6 H 1.48500 * 109.47012 * 205.01090 * 3 2 1 7 7 C 1.37874 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00412 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99921 * 0.02887 * 7 2 1 10 10 C 1.52995 * 109.47717 * 295.13986 * 9 7 2 11 11 C 1.52999 * 109.47449 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47065 * 60.00019 * 11 10 9 13 13 N 1.46894 * 109.47033 * 180.02562 * 12 11 10 14 14 C 1.47909 * 110.99906 * 295.61650 * 13 12 11 15 15 C 1.53997 * 107.05609 * 214.15818 * 14 13 12 16 16 H 1.08990 * 110.31161 * 120.14462 * 15 14 13 17 17 O 1.42900 * 110.30500 * 242.30740 * 15 14 13 18 18 C 1.54593 * 105.13921 * 1.22141 * 15 14 13 19 19 H 1.08998 * 110.72457 * 263.41912 * 18 15 14 20 20 C 1.53004 * 110.72038 * 140.31780 * 18 15 14 21 21 O 1.42905 * 109.47234 * 66.45415 * 20 18 15 22 22 C 1.48536 * 111.00319 * 178.22317 * 13 12 11 23 23 C 1.53001 * 109.46842 * 299.99982 * 12 11 10 24 24 C 1.52994 * 109.47456 * 60.00425 * 23 12 11 25 25 H 0.97002 * 120.00322 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46804 * 55.14405 * 9 7 2 27 27 H 1.09006 * 109.46857 * 300.00316 * 10 9 7 28 28 H 1.09001 * 109.47334 * 59.99478 * 10 9 7 29 29 H 1.08996 * 109.46697 * 299.99778 * 11 10 9 30 30 H 1.09002 * 109.46735 * 179.97438 * 11 10 9 31 31 H 1.08997 * 109.47105 * 59.99664 * 12 11 10 32 32 H 1.08993 * 109.91466 * 333.50812 * 14 13 12 33 33 H 1.09000 * 109.91289 * 94.80552 * 14 13 12 34 34 H 0.96697 * 114.00628 * 298.54926 * 17 15 14 35 35 H 1.08994 * 109.47360 * 186.45079 * 20 18 15 36 36 H 1.09001 * 109.46977 * 306.45362 * 20 18 15 37 37 H 0.96695 * 114.00372 * 179.97438 * 21 20 18 38 38 H 1.09000 * 110.66127 * 278.16025 * 22 13 12 39 39 H 1.09000 * 110.66414 * 41.27896 * 22 13 12 40 40 H 1.08997 * 109.47011 * 299.99740 * 23 12 11 41 41 H 1.09002 * 109.46855 * 180.02562 * 23 12 11 42 42 H 1.08993 * 109.47503 * 180.02562 * 24 23 12 43 43 H 1.09006 * 109.47527 * 59.99502 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3912 2.1072 1.3949 5 1 1.5032 2.6200 -0.8027 6 1 3.5953 1.4121 -0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0018 10 6 0.4647 -2.6355 1.3036 11 6 -0.3008 -3.9602 1.3020 12 6 0.6886 -5.1207 1.1790 13 7 -0.0464 -6.3926 1.1769 14 6 -0.7363 -6.6083 2.4673 15 6 -0.7127 -8.1229 2.7445 16 1 -0.1906 -8.3285 3.6789 17 8 -2.0445 -8.6385 2.7955 18 6 0.0561 -8.7394 1.5533 19 1 -0.6364 -9.1059 0.7956 20 6 0.9799 -9.8628 2.0284 21 8 0.1937 -10.9507 2.5187 22 6 0.8800 -7.5425 1.0159 23 6 1.4749 -4.9844 -0.1264 24 6 2.2404 -3.6598 -0.1248 25 1 -0.4851 0.8400 0.0004 26 1 0.5611 -2.5195 -0.8454 27 1 1.1547 -2.6151 2.1472 28 1 -0.2405 -1.8089 1.3910 29 1 -0.9908 -3.9800 0.4584 30 1 -0.8606 -4.0574 2.2322 31 1 1.3786 -5.1008 2.0225 32 1 -0.2121 -6.0772 3.2618 33 1 -1.7666 -6.2590 2.4004 34 1 -2.5882 -8.2548 3.4971 35 1 1.5940 -10.2048 1.1955 36 1 1.6234 -9.4911 2.8258 37 1 0.7148 -11.7005 2.8371 38 1 1.1318 -7.6894 -0.0344 39 1 1.7809 -7.3970 1.6118 40 1 0.7849 -5.0044 -0.9699 41 1 2.1794 -5.8115 -0.2142 42 1 2.8002 -3.5624 -1.0549 43 1 2.9305 -3.6398 0.7188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:37 Heat of formation + Delta-G solvation = -139.465425 kcal Electronic energy + Delta-G solvation = -21593.469290 eV Core-core repulsion = 18443.406457 eV Total energy + Delta-G solvation = -3150.062833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97444 -39.00503 -37.39187 -36.61924 -34.65157 -32.79746 -31.53966 -30.39522 -28.85589 -26.66676 -25.39417 -23.27626 -23.13357 -21.62005 -20.96673 -20.41734 -18.44818 -18.25683 -18.14281 -17.13373 -16.79262 -16.50641 -15.69254 -15.23558 -14.91382 -14.79093 -14.72838 -14.60623 -14.27661 -13.97445 -13.52844 -13.35279 -13.15521 -13.00066 -12.82430 -12.61134 -12.37135 -12.20828 -12.10319 -11.93322 -11.84575 -11.64083 -11.61620 -11.18002 -10.98803 -10.80443 -10.68497 -10.49521 -10.36408 -9.36477 -8.07818 -6.20368 1.40483 1.41649 1.52040 2.44161 2.84965 3.17079 3.20671 3.33309 3.59118 3.87006 3.95803 4.04899 4.11774 4.25967 4.40708 4.42051 4.47534 4.51184 4.58386 4.64532 4.70174 4.71249 4.82065 4.82470 4.88281 4.94176 4.97901 5.00933 5.17432 5.21852 5.33830 5.39612 5.47696 5.62457 5.68396 5.92585 6.04158 6.10422 6.19365 6.42153 6.89032 6.93740 6.97103 7.47646 8.98232 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.045187 B = 0.003766 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.496252 B = 7432.672107 C = 7834.824133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.044 3.956 10 C -0.095 4.095 11 C -0.096 4.096 12 C 0.094 3.906 13 N -0.523 5.523 14 C 0.004 3.996 15 C 0.111 3.889 16 H 0.073 0.927 17 O -0.572 6.572 18 C -0.087 4.087 19 H 0.076 0.924 20 C 0.088 3.912 21 O -0.588 6.588 22 C 0.046 3.954 23 C -0.099 4.099 24 C -0.100 4.100 25 H 0.259 0.741 26 H -0.008 1.008 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.390 0.610 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.396 0.604 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -19.154 7.099 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.025 3.975 10 C -0.133 4.133 11 C -0.134 4.134 12 C -0.015 4.015 13 N -0.248 5.248 14 C -0.124 4.124 15 C 0.051 3.949 16 H 0.091 0.909 17 O -0.379 6.379 18 C -0.106 4.106 19 H 0.095 0.905 20 C 0.010 3.990 21 O -0.396 6.396 22 C -0.081 4.081 23 C -0.137 4.137 24 C -0.138 4.138 25 H 0.068 0.932 26 H 0.010 0.990 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.240 0.760 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.245 0.755 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.669 -18.953 5.999 19.949 hybrid contribution 0.860 1.449 1.108 2.016 sum 2.529 -17.504 7.107 19.060 Atomic orbital electron populations 1.70062 1.07234 1.26994 1.51601 1.25761 0.95632 1.02404 0.95022 0.85644 0.78897 0.79700 0.78028 1.20226 1.21102 1.19162 1.21643 0.93035 0.92338 1.50129 0.92971 1.18640 0.93248 0.92420 0.93155 1.21344 0.98364 0.95373 0.98257 1.21466 0.97420 0.94283 1.00199 1.21687 0.93766 0.88580 0.97421 1.64730 1.26599 1.01701 1.31736 1.23703 1.00636 0.97105 0.90981 1.22633 0.83938 0.90231 0.98067 0.90879 1.86555 1.24028 1.68131 1.59203 1.22071 0.96935 0.94450 0.97149 0.90520 1.22114 0.91877 0.86654 0.98378 1.86531 1.38559 1.29827 1.84728 1.23191 0.94253 0.88333 1.02346 1.21516 0.98263 0.97321 0.96603 1.21481 0.97853 0.94259 1.00200 0.93200 0.98989 0.95041 0.93430 0.93869 0.92835 0.94032 0.92848 0.90414 0.76046 0.91520 0.92147 0.75463 0.88824 0.91976 0.92955 0.90502 0.93314 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 11.68 21.45 0.25 -54.06 16 2 C 0.01 0.57 5.32 84.65 0.45 1.02 16 3 Si 0.95 44.07 29.54 68.60 2.03 46.09 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.53 -29.70 8.50 25.60 0.22 -29.48 16 8 H 0.05 2.84 7.75 -2.91 -0.02 2.82 16 9 C 0.04 2.21 2.01 -11.54 -0.02 2.19 16 10 C -0.09 -4.49 5.03 30.59 0.15 -4.34 16 11 C -0.10 -3.73 5.18 30.59 0.16 -3.57 16 12 C 0.09 3.05 1.64 44.92 0.07 3.12 16 13 N -0.52 -14.85 5.11 -857.87 -4.38 -19.23 16 14 C 0.00 0.10 5.33 86.45 0.46 0.56 16 15 C 0.11 2.44 3.79 31.47 0.12 2.56 16 16 H 0.07 1.40 7.80 -2.39 -0.02 1.38 16 17 O -0.57 -13.55 13.26 -148.98 -1.97 -15.52 16 18 C -0.09 -1.88 3.09 -9.59 -0.03 -1.91 16 19 H 0.08 2.03 8.08 -2.39 -0.02 2.02 16 20 C 0.09 1.39 6.37 71.98 0.46 1.85 16 21 O -0.59 -10.51 13.50 -148.98 -2.01 -12.52 16 22 C 0.05 1.03 4.78 86.65 0.41 1.44 16 23 C -0.10 -3.33 5.01 30.59 0.15 -3.18 16 24 C -0.10 -4.04 5.15 30.59 0.16 -3.89 16 25 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 26 H -0.01 -0.47 8.14 -2.38 -0.02 -0.48 16 27 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.05 2.59 6.47 -2.39 -0.02 2.57 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.91 7.32 -2.39 -0.02 1.89 16 31 H 0.04 1.33 7.97 -2.39 -0.02 1.31 16 32 H 0.05 1.28 7.65 -2.39 -0.02 1.26 16 33 H 0.08 2.05 7.96 -2.39 -0.02 2.03 16 34 H 0.39 5.88 9.11 -74.06 -0.67 5.21 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.77 8.08 -2.39 -0.02 0.75 16 37 H 0.40 3.04 9.12 -74.06 -0.68 2.36 16 38 H 0.09 1.99 7.65 -2.39 -0.02 1.98 16 39 H 0.06 1.21 7.92 -2.39 -0.02 1.19 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.08 2.10 6.89 -2.39 -0.02 2.08 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -68.51 330.68 -3.68 -72.20 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -0.36 Total: 16.67 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 2.76 Total: -33.63 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -4.13 Total: -73.29 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -3.99 Total: -28.04 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.51 -3.68 -72.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.268 kcal (2) G-P(sol) polarization free energy of solvation -68.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds