Wall clock time and date at job start Mon Mar 30 2020 01:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 11 11 C 1.53003 * 109.46915 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47301 * 60.00084 * 11 10 9 13 13 N 1.46896 * 109.47256 * 180.02562 * 12 11 10 14 14 C 1.47010 * 111.00252 * 176.04794 * 13 12 11 15 15 C 1.53101 * 109.26153 * 177.60625 * 14 13 12 16 16 O 1.43011 * 109.25937 * 56.84216 * 15 14 13 17 17 C 1.43017 * 113.73814 * 301.33675 * 16 15 14 18 18 H 1.09002 * 109.50826 * 298.68421 * 17 16 15 19 19 C 1.53005 * 109.50276 * 178.60523 * 17 16 15 20 20 O 1.42898 * 109.47304 * 65.00049 * 19 17 16 21 21 C 1.47014 * 111.00193 * 52.40528 * 13 12 11 22 22 C 1.53005 * 109.46653 * 299.99854 * 12 11 10 23 23 C 1.52994 * 109.46916 * 60.00417 * 22 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09003 * 109.47532 * 300.00309 * 10 9 7 27 27 H 1.09001 * 109.47094 * 60.00208 * 10 9 7 28 28 H 1.09000 * 109.46939 * 299.99421 * 11 10 9 29 29 H 1.09004 * 109.47038 * 180.02562 * 11 10 9 30 30 H 1.08994 * 109.46974 * 59.99825 * 12 11 10 31 31 H 1.09003 * 109.50473 * 297.53794 * 14 13 12 32 32 H 1.08997 * 109.50642 * 57.62314 * 14 13 12 33 33 H 1.09000 * 109.50730 * 176.78407 * 15 14 13 34 34 H 1.09002 * 109.50063 * 296.87121 * 15 14 13 35 35 H 1.09001 * 109.46759 * 184.99814 * 19 17 16 36 36 H 1.09002 * 109.47262 * 304.99429 * 19 17 16 37 37 H 0.96701 * 113.99797 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.50696 * 302.33098 * 21 13 12 39 39 H 1.09002 * 109.50613 * 62.46508 * 21 13 12 40 40 H 1.08994 * 109.47407 * 299.99706 * 22 12 11 41 41 H 1.09001 * 109.46679 * 179.97438 * 22 12 11 42 42 H 1.09004 * 109.46806 * 179.97438 * 23 22 12 43 43 H 1.09000 * 109.47828 * 59.99866 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 0.3713 -2.5857 1.2434 11 6 -0.3933 -3.9110 1.2378 12 6 0.6012 -5.0736 1.2330 13 7 -0.1329 -6.3460 1.2270 14 6 0.7898 -7.4862 1.1277 15 6 -0.0106 -8.7900 1.1849 16 8 -0.9866 -8.7906 0.1396 17 6 -1.9022 -7.6940 0.2061 18 1 -2.4582 -7.7403 1.1425 19 6 -2.8768 -7.7700 -0.9710 20 8 -3.6831 -8.9432 -0.8468 21 6 -1.1210 -6.3790 0.1389 22 6 1.4809 -4.9870 -0.0159 23 6 2.2455 -3.6618 -0.0101 24 1 -0.4850 0.8401 -0.0004 25 1 0.6244 -2.5529 -0.8956 26 1 0.9978 -2.5319 2.1338 27 1 -0.3370 -1.7572 1.2471 28 1 -1.0200 -3.9651 0.3476 29 1 -1.0204 -3.9725 2.1273 30 1 1.2277 -5.0194 2.1232 31 1 1.3329 -7.4337 0.1841 32 1 1.4967 -7.4556 1.9567 33 1 0.6632 -9.6368 1.0543 34 1 -0.5105 -8.8681 2.1504 35 1 -3.5167 -6.8876 -0.9703 36 1 -2.3161 -7.8115 -1.9048 37 1 -4.3253 -9.0564 -1.5608 38 1 -1.8093 -5.5408 0.2467 39 1 -0.6084 -6.3089 -0.8205 40 1 0.8543 -5.0412 -0.9061 41 1 2.1897 -5.8150 -0.0191 42 1 2.8725 -3.6003 -0.8997 43 1 2.8721 -3.6076 0.8801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:44 Heat of formation + Delta-G solvation = -104.403215 kcal Electronic energy + Delta-G solvation = -21929.297177 eV Core-core repulsion = 18780.754755 eV Total energy + Delta-G solvation = -3148.542421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.06827 -37.88981 -36.59501 -34.82393 -32.31102 -31.97297 -29.99543 -29.17169 -27.22213 -25.50014 -24.10894 -22.72386 -21.61171 -20.87330 -19.83260 -18.58322 -17.36143 -16.63627 -16.34993 -16.21581 -15.11911 -14.93669 -14.68664 -14.41955 -14.09729 -13.95623 -13.46989 -13.29592 -12.98834 -12.59732 -12.31705 -12.01707 -11.70776 -11.39538 -11.29087 -11.13432 -11.05147 -10.83040 -10.62437 -10.42871 -10.35041 -10.17336 -10.11966 -9.82301 -9.52000 -9.39991 -8.91050 -8.74314 -8.30647 -8.01482 -5.98727 -4.04575 3.28594 3.36975 3.40810 3.69460 3.76374 4.27864 4.43839 4.92591 4.98317 5.07146 5.13274 5.22631 5.25400 5.30945 5.39225 5.41814 5.49459 5.55332 5.65579 5.78507 5.87520 5.91382 6.01408 6.08640 6.20709 6.37643 6.47769 6.48813 6.67727 6.74912 6.84980 7.05797 7.14561 7.23288 7.23667 7.30489 7.48464 7.51528 7.75309 8.01006 8.15551 8.47209 8.99738 9.60222 11.06956 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033010 B = 0.004244 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.022231 B = 6595.706794 C = 7081.715355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.108 4.108 11 C -0.111 4.111 12 C 0.089 3.911 13 N -0.531 5.531 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.377 6.377 17 C 0.095 3.905 18 H 0.071 0.929 19 C 0.084 3.916 20 O -0.567 6.567 21 C 0.020 3.980 22 C -0.146 4.146 23 C -0.104 4.104 24 H 0.259 0.741 25 H 0.023 0.977 26 H 0.034 0.966 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.378 0.622 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 -14.961 0.275 15.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.146 4.146 11 C -0.149 4.149 12 C -0.018 4.018 13 N -0.255 5.255 14 C -0.116 4.116 15 C -0.012 4.012 16 O -0.296 6.296 17 C 0.037 3.963 18 H 0.089 0.911 19 C 0.005 3.995 20 O -0.372 6.372 21 C -0.108 4.108 22 C -0.185 4.185 23 C -0.142 4.142 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.224 0.776 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.935 -15.099 1.132 15.644 hybrid contribution 0.698 1.360 -1.081 1.872 sum -3.238 -13.739 0.051 14.115 Atomic orbital electron populations 1.69884 1.05843 1.26176 1.51090 1.24963 0.94832 0.98985 0.95202 0.86598 0.80187 0.84037 0.77541 1.19866 1.21108 1.21058 1.21276 0.92903 0.90781 1.50093 0.92806 1.18654 0.92596 0.91480 0.94241 1.21604 0.99610 0.94652 0.98736 1.21758 0.97325 0.95295 1.00474 1.21837 0.94708 0.87590 0.97713 1.62533 1.15928 1.02979 1.44014 1.22814 0.95583 0.91476 1.01729 1.22641 0.90571 0.96823 0.91152 1.88000 1.43924 1.47016 1.50654 1.22136 0.89529 0.86114 0.98528 0.91095 1.22145 0.91975 0.87811 0.97522 1.86523 1.53491 1.44919 1.52239 1.22736 0.96259 0.97674 0.94137 1.22200 0.98900 0.98932 0.98476 1.21562 0.98580 0.94000 1.00051 0.93153 0.95932 0.94732 0.88868 0.92830 0.93081 0.90219 0.93462 0.89860 0.88783 0.92568 0.91796 0.92806 0.77562 0.88736 0.93498 0.92710 0.93493 0.93648 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 11.33 55.43 0.63 -24.46 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -13.92 8.56 -34.44 -0.29 -14.22 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.18 2.10 -91.77 -0.19 0.99 16 10 C -0.11 -2.45 4.98 -26.73 -0.13 -2.59 16 11 C -0.11 -2.07 4.72 -26.73 -0.13 -2.20 16 12 C 0.09 1.49 2.38 -67.71 -0.16 1.33 16 13 N -0.53 -7.87 4.78 -226.34 -1.08 -8.95 16 14 C 0.01 0.16 5.08 -3.71 -0.02 0.14 16 15 C 0.07 0.79 7.01 37.21 0.26 1.05 16 16 O -0.38 -5.43 10.43 -39.95 -0.42 -5.85 16 17 C 0.10 1.27 3.09 -26.68 -0.08 1.18 16 18 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 19 C 0.08 0.93 6.71 37.16 0.25 1.18 16 20 O -0.57 -6.40 13.63 -39.95 -0.54 -6.95 16 21 C 0.02 0.29 4.12 -3.71 -0.02 0.27 16 22 C -0.15 -2.54 4.47 -26.73 -0.12 -2.65 16 23 C -0.10 -2.13 5.14 -26.74 -0.14 -2.26 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.09 2.41 6.08 -51.93 -0.32 2.09 16 28 H 0.05 1.01 6.27 -51.93 -0.33 0.68 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.05 0.65 6.39 -51.93 -0.33 0.32 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.38 2.32 9.12 45.56 0.42 2.74 16 38 H 0.09 1.34 6.06 -51.93 -0.31 1.03 16 39 H 0.05 0.70 6.64 -51.93 -0.34 0.35 16 40 H 0.05 0.98 6.65 -51.93 -0.35 0.63 16 41 H 0.05 0.74 6.40 -51.93 -0.33 0.41 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 322.06 15.07 4.85 4.85 Total: -1.00 -30.05 322.06 -8.96 -39.01 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.51 Total: 2.44 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -0.87 Total: -16.20 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: -0.45 Total: -33.41 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.96 Total: -12.80 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.05 -8.96 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.392 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds