Wall clock time and date at job start Mon Mar 30 2020 01:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00057 * 2 1 4 4 H 1.48499 * 109.47144 * 274.99481 * 3 2 1 5 5 H 1.48504 * 109.46909 * 34.99206 * 3 2 1 6 6 H 1.48499 * 109.47252 * 154.99028 * 3 2 1 7 7 C 1.37876 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99841 * 189.54704 * 7 2 1 9 9 C 1.50700 * 120.00111 * 9.54146 * 7 2 1 10 10 C 1.53004 * 109.46722 * 65.43009 * 9 7 2 11 11 C 1.53001 * 109.47295 * 60.00037 * 10 9 7 12 12 C 1.53005 * 109.46775 * 59.99643 * 11 10 9 13 13 N 1.46904 * 109.46523 * 180.02562 * 12 11 10 14 14 C 1.47018 * 110.99519 * 171.36670 * 13 12 11 15 15 C 1.53100 * 109.25412 * 182.39378 * 14 13 12 16 16 O 1.43019 * 109.25624 * 303.14791 * 15 14 13 17 17 C 1.43013 * 113.73705 * 58.67794 * 16 15 14 18 18 H 1.09003 * 109.54454 * 61.28315 * 17 16 15 19 19 C 1.53002 * 109.50495 * 181.39025 * 17 16 15 20 20 O 1.42895 * 109.47246 * 294.78006 * 19 17 16 21 21 C 1.47015 * 111.00162 * 295.00123 * 13 12 11 22 22 C 1.52991 * 109.47379 * 299.99984 * 12 11 10 23 23 C 1.52998 * 109.47229 * 185.42812 * 9 7 2 24 24 H 0.96997 * 119.99600 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47183 * 305.43247 * 9 7 2 26 26 H 1.09004 * 109.46906 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.47297 * 300.00053 * 10 9 7 28 28 H 1.09001 * 109.46767 * 300.00044 * 11 10 9 29 29 H 1.08994 * 109.47005 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47146 * 60.00633 * 12 11 10 31 31 H 1.08994 * 109.50650 * 302.32533 * 14 13 12 32 32 H 1.09002 * 109.50782 * 62.45649 * 14 13 12 33 33 H 1.09002 * 109.50309 * 183.21681 * 15 14 13 34 34 H 1.08992 * 109.54471 * 63.10770 * 15 14 13 35 35 H 1.09001 * 109.46899 * 54.78303 * 19 17 16 36 36 H 1.08997 * 109.46868 * 174.78049 * 19 17 16 37 37 H 0.96698 * 114.00404 * 180.02562 * 20 19 17 38 38 H 1.09006 * 109.50428 * 297.54403 * 21 13 12 39 39 H 1.08992 * 109.50608 * 57.63105 * 21 13 12 40 40 H 1.09001 * 109.47511 * 300.00425 * 22 12 11 41 41 H 1.09001 * 109.47175 * 180.02562 * 22 12 11 42 42 H 1.09004 * 109.46857 * 60.00330 * 23 9 7 43 43 H 1.09004 * 109.46993 * 180.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1074 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4120 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0734 -1.2006 0.1546 9 6 1.2667 -2.4900 -0.2174 10 6 0.6895 -2.5172 -1.6342 11 6 1.8272 -2.4017 -2.6507 12 6 2.7929 -3.5747 -2.4707 13 7 3.8855 -3.4634 -3.4464 14 6 4.9384 -4.4526 -3.1734 15 6 6.0815 -4.2625 -4.1739 16 8 5.5672 -4.3722 -5.5040 17 6 4.5403 -3.4233 -5.8043 18 1 4.9396 -2.4130 -5.7140 19 6 4.0382 -3.6485 -7.2319 20 8 5.0899 -3.3656 -8.1569 21 6 3.3816 -3.6048 -4.8202 22 6 3.3701 -3.5475 -1.0541 23 6 2.2325 -3.6630 -0.0376 24 1 -0.4849 0.8401 -0.0004 25 1 0.4563 -2.5723 0.5067 26 1 0.1555 -3.4545 -1.7909 27 1 0.0015 -1.6816 -1.7623 28 1 2.3608 -1.4643 -2.4937 29 1 1.4159 -2.4206 -3.6599 30 1 2.2593 -4.5121 -2.6277 31 1 5.3148 -4.3132 -2.1600 32 1 4.5288 -5.4576 -3.2751 33 1 6.8383 -5.0299 -4.0119 34 1 6.5267 -3.2773 -4.0360 35 1 3.7225 -4.6855 -7.3466 36 1 3.1939 -2.9878 -7.4285 37 1 4.8420 -3.4871 -9.0837 38 1 2.9472 -4.5963 -4.9483 39 1 2.6211 -2.8471 -5.0087 40 1 3.9038 -2.6101 -0.8972 41 1 4.0585 -4.3829 -0.9261 42 1 2.6437 -3.6436 0.9717 43 1 1.6989 -4.6004 -0.1950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:46 Heat of formation + Delta-G solvation = -102.587470 kcal Electronic energy + Delta-G solvation = -22127.559475 eV Core-core repulsion = 18979.095790 eV Total energy + Delta-G solvation = -3148.463685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87945 -37.89082 -36.62066 -34.84666 -32.19828 -31.92449 -29.88302 -29.11747 -27.20296 -25.20725 -24.33541 -22.90753 -21.10875 -20.77684 -19.99487 -18.71301 -17.47416 -16.57337 -16.35375 -15.73797 -15.21267 -14.79369 -14.69711 -14.28882 -14.06635 -13.91476 -13.59032 -13.22546 -12.86100 -12.66502 -12.18071 -11.83721 -11.68260 -11.56969 -11.20157 -10.98295 -10.86342 -10.79649 -10.60411 -10.49828 -10.28768 -10.14689 -10.11650 -9.73147 -9.47435 -9.18017 -8.78997 -8.65571 -8.24101 -8.06263 -5.96856 -3.95668 3.33747 3.41380 3.44600 3.71881 3.76820 4.29172 4.49213 4.94072 5.01853 5.09739 5.14988 5.24537 5.26275 5.36844 5.41058 5.49245 5.56116 5.65111 5.75260 5.89455 5.90334 5.96950 6.05596 6.24506 6.39266 6.45956 6.49820 6.61195 6.67379 6.80727 7.03762 7.15164 7.17625 7.29110 7.31323 7.46047 7.47594 7.57911 7.77341 7.93514 8.06961 8.51566 9.06692 9.66393 11.12733 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.005187 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.692004 B = 5397.317539 C = 5774.179351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.880 3.120 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.500 4.500 8 H 0.056 0.944 9 C 0.042 3.958 10 C -0.100 4.100 11 C -0.093 4.093 12 C 0.096 3.904 13 N -0.530 5.530 14 C 0.013 3.987 15 C 0.064 3.936 16 O -0.378 6.378 17 C 0.094 3.906 18 H 0.074 0.926 19 C 0.085 3.915 20 O -0.566 6.566 21 C 0.026 3.974 22 C -0.102 4.102 23 C -0.105 4.105 24 H 0.258 0.742 25 H 0.031 0.969 26 H 0.016 0.984 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.093 0.907 32 H 0.036 0.964 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.377 0.623 38 H 0.038 0.962 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.049 0.951 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.861 -8.606 -11.439 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.024 3.976 10 C -0.139 4.139 11 C -0.131 4.131 12 C -0.011 4.011 13 N -0.254 5.254 14 C -0.115 4.115 15 C -0.013 4.013 16 O -0.297 6.297 17 C 0.036 3.964 18 H 0.092 0.908 19 C 0.007 3.993 20 O -0.370 6.370 21 C -0.102 4.102 22 C -0.140 4.140 23 C -0.143 4.143 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.224 0.776 38 H 0.056 0.944 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 7.306 -8.026 -10.956 15.422 hybrid contribution -0.419 0.203 -0.395 0.611 sum 6.887 -7.823 -11.351 15.410 Atomic orbital electron populations 1.69965 1.05898 1.26253 1.50902 1.24921 0.94652 0.98800 0.95373 0.86764 0.80145 0.84280 0.77960 1.20784 1.21536 1.19946 1.21121 0.93896 0.90697 1.48134 0.92569 1.18701 0.93967 0.92197 0.92779 1.21447 0.96484 0.98846 0.97125 1.21457 0.96329 0.98357 0.96945 1.21699 0.90300 0.97689 0.91435 1.62249 1.12433 1.49113 1.01648 1.22858 0.93844 0.94003 1.00782 1.22672 0.95084 1.02012 0.81499 1.87981 1.54413 1.56832 1.30514 1.22115 0.88366 0.93824 0.92072 0.90840 1.22132 0.89349 0.99810 0.88025 1.86541 1.39391 1.92042 1.19076 1.22659 0.96988 1.01115 0.89479 1.21578 0.98013 1.01387 0.93027 1.21549 0.96929 0.98557 0.97310 0.93231 0.95075 0.96541 0.90791 0.90117 0.95012 0.95496 0.88887 0.94551 0.88788 0.92307 0.92965 0.91913 0.77629 0.94391 0.89050 0.90182 0.94375 0.93190 0.95047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 12.16 55.43 0.67 -24.60 16 2 C 0.06 1.72 5.20 -17.82 -0.09 1.63 16 3 Si 0.88 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.50 -13.15 6.63 -34.44 -0.23 -13.38 16 8 H 0.06 1.48 6.54 -52.48 -0.34 1.14 16 9 C 0.04 1.01 2.45 -91.77 -0.22 0.79 16 10 C -0.10 -2.27 5.29 -26.73 -0.14 -2.41 16 11 C -0.09 -1.88 4.89 -26.73 -0.13 -2.01 16 12 C 0.10 1.71 1.95 -67.71 -0.13 1.58 16 13 N -0.53 -8.51 4.59 -226.33 -1.04 -9.55 16 14 C 0.01 0.19 5.11 -3.71 -0.02 0.17 16 15 C 0.06 0.84 7.01 37.21 0.26 1.10 16 16 O -0.38 -5.61 10.44 -39.73 -0.41 -6.03 16 17 C 0.09 1.29 3.09 -26.68 -0.08 1.21 16 18 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 19 C 0.09 0.93 6.71 37.16 0.25 1.18 16 20 O -0.57 -6.44 13.63 -39.73 -0.54 -6.98 16 21 C 0.03 0.37 4.71 -3.71 -0.02 0.36 16 22 C -0.10 -1.89 4.45 -26.73 -0.12 -2.01 16 23 C -0.11 -2.14 5.42 -26.73 -0.14 -2.28 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.03 0.84 8.09 -51.93 -0.42 0.42 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 28 H 0.08 1.84 7.22 -51.93 -0.37 1.47 16 29 H 0.03 0.58 6.48 -51.93 -0.34 0.24 16 30 H 0.03 0.49 8.13 -51.93 -0.42 0.06 16 31 H 0.09 1.27 6.05 -51.93 -0.31 0.95 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.38 2.29 9.12 45.56 0.42 2.71 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.29 6.33 -51.93 -0.33 0.96 16 40 H 0.08 1.64 6.52 -51.93 -0.34 1.30 16 41 H 0.04 0.62 6.26 -51.93 -0.33 0.29 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -30.02 321.96 -8.82 -38.84 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.51 Total: 1.36 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -0.82 Total: -14.08 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: -0.37 Total: -34.15 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.96 Total: -13.01 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.02 -8.82 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.743 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds