Wall clock time and date at job start Mon Mar 30 2020 01:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00057 * 2 1 4 4 H 1.48499 * 109.47144 * 274.99481 * 3 2 1 5 5 H 1.48504 * 109.46909 * 34.99206 * 3 2 1 6 6 H 1.48499 * 109.47252 * 154.99028 * 3 2 1 7 7 C 1.37876 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99841 * 189.54704 * 7 2 1 9 9 C 1.50700 * 120.00111 * 9.54146 * 7 2 1 10 10 C 1.53004 * 109.46722 * 65.43009 * 9 7 2 11 11 C 1.53001 * 109.47295 * 60.00037 * 10 9 7 12 12 C 1.53005 * 109.46775 * 59.99643 * 11 10 9 13 13 N 1.46904 * 109.46523 * 180.02562 * 12 11 10 14 14 C 1.47018 * 110.99519 * 171.36670 * 13 12 11 15 15 C 1.53100 * 109.25412 * 182.39378 * 14 13 12 16 16 O 1.43019 * 109.25624 * 303.14791 * 15 14 13 17 17 C 1.43013 * 113.73705 * 58.67794 * 16 15 14 18 18 H 1.09003 * 109.54454 * 61.28315 * 17 16 15 19 19 C 1.53002 * 109.50495 * 181.39025 * 17 16 15 20 20 O 1.42895 * 109.47246 * 294.78006 * 19 17 16 21 21 C 1.47015 * 111.00162 * 295.00123 * 13 12 11 22 22 C 1.52991 * 109.47379 * 299.99984 * 12 11 10 23 23 C 1.52998 * 109.47229 * 185.42812 * 9 7 2 24 24 H 0.96997 * 119.99600 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47183 * 305.43247 * 9 7 2 26 26 H 1.09004 * 109.46906 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.47297 * 300.00053 * 10 9 7 28 28 H 1.09001 * 109.46767 * 300.00044 * 11 10 9 29 29 H 1.08994 * 109.47005 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47146 * 60.00633 * 12 11 10 31 31 H 1.08994 * 109.50650 * 302.32533 * 14 13 12 32 32 H 1.09002 * 109.50782 * 62.45649 * 14 13 12 33 33 H 1.09002 * 109.50309 * 183.21681 * 15 14 13 34 34 H 1.08992 * 109.54471 * 63.10770 * 15 14 13 35 35 H 1.09001 * 109.46899 * 54.78303 * 19 17 16 36 36 H 1.08997 * 109.46868 * 174.78049 * 19 17 16 37 37 H 0.96698 * 114.00404 * 180.02562 * 20 19 17 38 38 H 1.09006 * 109.50428 * 297.54403 * 21 13 12 39 39 H 1.08992 * 109.50608 * 57.63105 * 21 13 12 40 40 H 1.09001 * 109.47511 * 300.00425 * 22 12 11 41 41 H 1.09001 * 109.47175 * 180.02562 * 22 12 11 42 42 H 1.09004 * 109.46857 * 60.00330 * 23 9 7 43 43 H 1.09004 * 109.46993 * 180.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1074 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4120 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0734 -1.2006 0.1546 9 6 1.2667 -2.4900 -0.2174 10 6 0.6895 -2.5172 -1.6342 11 6 1.8272 -2.4017 -2.6507 12 6 2.7929 -3.5747 -2.4707 13 7 3.8855 -3.4634 -3.4464 14 6 4.9384 -4.4526 -3.1734 15 6 6.0815 -4.2625 -4.1739 16 8 5.5672 -4.3722 -5.5040 17 6 4.5403 -3.4233 -5.8043 18 1 4.9396 -2.4130 -5.7140 19 6 4.0382 -3.6485 -7.2319 20 8 5.0899 -3.3656 -8.1569 21 6 3.3816 -3.6048 -4.8202 22 6 3.3701 -3.5475 -1.0541 23 6 2.2325 -3.6630 -0.0376 24 1 -0.4849 0.8401 -0.0004 25 1 0.4563 -2.5723 0.5067 26 1 0.1555 -3.4545 -1.7909 27 1 0.0015 -1.6816 -1.7623 28 1 2.3608 -1.4643 -2.4937 29 1 1.4159 -2.4206 -3.6599 30 1 2.2593 -4.5121 -2.6277 31 1 5.3148 -4.3132 -2.1600 32 1 4.5288 -5.4576 -3.2751 33 1 6.8383 -5.0299 -4.0119 34 1 6.5267 -3.2773 -4.0360 35 1 3.7225 -4.6855 -7.3466 36 1 3.1939 -2.9878 -7.4285 37 1 4.8420 -3.4871 -9.0837 38 1 2.9472 -4.5963 -4.9483 39 1 2.6211 -2.8471 -5.0087 40 1 3.9038 -2.6101 -0.8972 41 1 4.0585 -4.3829 -0.9261 42 1 2.6437 -3.6436 0.9717 43 1 1.6989 -4.6004 -0.1950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173332265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:45 Heat of formation + Delta-G solvation = -124.535638 kcal Electronic energy + Delta-G solvation = -22128.511219 eV Core-core repulsion = 18979.095790 eV Total energy + Delta-G solvation = -3149.415429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.07227 -39.31474 -37.53735 -36.26374 -34.05756 -33.04154 -31.45231 -30.68382 -28.42252 -26.84509 -25.82381 -24.08540 -22.65218 -22.08013 -21.28254 -20.48869 -18.31904 -17.83573 -17.55868 -17.46333 -16.65778 -16.21204 -15.90576 -15.72194 -15.34167 -15.02169 -14.86108 -14.82973 -14.46694 -13.93133 -13.53070 -13.36634 -13.29544 -12.97416 -12.80409 -12.54837 -12.42660 -12.34390 -12.16703 -11.95374 -11.83181 -11.55683 -11.42185 -11.04340 -10.96044 -10.61289 -10.58688 -10.45475 -10.28482 -9.29051 -8.06521 -6.09674 1.39901 1.43270 1.50967 2.47000 2.65986 2.77557 3.25892 3.34559 3.89836 3.96616 4.03463 4.04859 4.12258 4.21022 4.31398 4.40291 4.47234 4.53224 4.54130 4.61583 4.66042 4.75726 4.80710 4.85758 4.88226 4.92890 4.95221 5.00582 5.04548 5.20091 5.35802 5.52415 5.65291 5.66438 5.73493 5.96376 6.04558 6.11982 6.17003 6.20716 6.47629 6.91482 7.00254 7.54823 9.02933 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.005187 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.692004 B = 5397.317539 C = 5774.179351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.935 3.065 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.501 4.501 8 H 0.053 0.947 9 C 0.036 3.964 10 C -0.094 4.094 11 C -0.084 4.084 12 C 0.106 3.894 13 N -0.544 5.544 14 C 0.015 3.985 15 C 0.064 3.936 16 O -0.392 6.392 17 C 0.093 3.907 18 H 0.056 0.944 19 C 0.088 3.912 20 O -0.588 6.588 21 C 0.029 3.971 22 C -0.095 4.095 23 C -0.100 4.100 24 H 0.257 0.743 25 H -0.007 1.007 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.120 0.880 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.399 0.601 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.161 -9.844 -12.664 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.181 4.181 3 Si 0.762 3.238 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.018 3.982 10 C -0.133 4.133 11 C -0.122 4.122 12 C -0.001 4.001 13 N -0.269 5.269 14 C -0.113 4.113 15 C -0.013 4.013 16 O -0.311 6.311 17 C 0.035 3.965 18 H 0.074 0.926 19 C 0.010 3.990 20 O -0.396 6.396 21 C -0.099 4.099 22 C -0.133 4.133 23 C -0.138 4.138 24 H 0.066 0.934 25 H 0.011 0.989 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.138 0.862 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.249 0.751 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.621 -9.272 -12.201 17.583 hybrid contribution -0.820 0.566 -0.017 0.996 sum 7.801 -8.706 -12.218 16.910 Atomic orbital electron populations 1.70082 1.07137 1.26719 1.52322 1.25567 0.95286 1.01706 0.95566 0.85894 0.79176 0.80916 0.77829 1.20630 1.21501 1.19328 1.21384 0.93788 0.91787 1.46985 0.92873 1.18700 0.93636 0.93179 0.92721 1.21292 0.96853 0.98145 0.96988 1.21285 0.95755 0.98111 0.97016 1.21453 0.90436 0.96606 0.91641 1.62166 1.12215 1.50430 1.02109 1.22903 0.93424 0.93614 1.01331 1.22790 0.95152 1.02659 0.80662 1.87975 1.54724 1.57062 1.31309 1.22173 0.87829 0.92832 0.93691 0.92601 1.22126 0.89504 1.00921 0.86475 1.86474 1.40107 1.92199 1.20858 1.22657 0.97246 1.01414 0.88600 1.21479 0.97484 1.01431 0.92888 1.21449 0.96838 0.97509 0.98024 0.93432 0.98864 0.94938 0.94274 0.93171 0.93234 0.94644 0.88479 0.93983 0.86236 0.92943 0.91959 0.89967 0.75072 0.93631 0.89196 0.92470 0.91331 0.93344 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.75 12.16 21.45 0.26 -53.49 16 2 C 0.02 0.92 5.20 84.65 0.44 1.36 16 3 Si 0.93 44.08 29.55 68.60 2.03 46.11 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.50 -26.75 6.63 25.60 0.17 -26.58 16 8 H 0.05 2.82 6.54 -2.91 -0.02 2.80 16 9 C 0.04 1.76 2.45 -11.54 -0.03 1.74 16 10 C -0.09 -4.28 5.29 30.60 0.16 -4.12 16 11 C -0.08 -3.32 4.89 30.60 0.15 -3.17 16 12 C 0.11 3.58 1.95 44.91 0.09 3.67 16 13 N -0.54 -16.37 4.59 -869.96 -4.00 -20.37 16 14 C 0.02 0.38 5.11 86.31 0.44 0.82 16 15 C 0.06 1.51 7.01 72.02 0.50 2.02 16 16 O -0.39 -10.74 10.44 -144.68 -1.51 -12.25 16 17 C 0.09 2.38 3.09 30.63 0.09 2.47 16 18 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 19 C 0.09 1.72 6.71 71.98 0.48 2.20 16 20 O -0.59 -12.12 13.63 -144.68 -1.97 -14.09 16 21 C 0.03 0.77 4.71 86.31 0.41 1.17 16 22 C -0.10 -3.35 4.45 30.59 0.14 -3.21 16 23 C -0.10 -3.95 5.42 30.59 0.17 -3.79 16 24 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 25 H -0.01 -0.38 8.09 -2.39 -0.02 -0.40 16 26 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.04 2.03 6.90 -2.39 -0.02 2.01 16 28 H 0.05 2.29 7.22 -2.39 -0.02 2.28 16 29 H 0.05 1.76 6.48 -2.39 -0.02 1.74 16 30 H 0.04 1.16 8.13 -2.39 -0.02 1.14 16 31 H 0.10 2.36 6.05 -2.39 -0.01 2.34 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.40 3.91 9.12 -74.06 -0.68 3.23 16 38 H 0.05 1.14 8.14 -2.38 -0.02 1.13 16 39 H 0.09 2.36 6.33 -2.39 -0.02 2.35 16 40 H 0.06 2.29 6.52 -2.39 -0.02 2.27 16 41 H 0.07 2.01 6.26 -2.39 -0.01 1.99 16 42 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -64.82 321.96 -1.66 -66.49 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.31 Total: 13.02 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 3.21 Total: -25.42 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -3.73 Total: -73.85 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -3.48 Total: -26.34 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -64.82 -1.66 -66.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.050 kcal (2) G-P(sol) polarization free energy of solvation -64.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds