Wall clock time and date at job start Mon Mar 30 2020 01:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48503 * 109.47086 * 87.72558 * 3 2 1 5 5 H 1.48502 * 109.47413 * 207.72716 * 3 2 1 6 6 H 1.48501 * 109.47109 * 327.72964 * 3 2 1 7 7 C 1.37886 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00319 * 0.06667 * 7 2 1 9 9 C 1.50706 * 119.99851 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46730 * 264.92048 * 9 7 2 11 11 C 1.52997 * 109.47100 * 299.99745 * 10 9 7 12 12 C 1.53004 * 109.47257 * 300.00136 * 11 10 9 13 13 N 1.46897 * 109.46889 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99467 * 109.39419 * 13 12 11 15 15 C 1.53005 * 110.45538 * 182.45897 * 14 13 12 16 16 O 1.42902 * 109.47072 * 58.36634 * 15 14 13 17 17 C 1.54503 * 110.51315 * 59.85568 * 14 13 12 18 18 C 1.54486 * 104.05898 * 241.35198 * 17 14 13 19 19 O 1.44426 * 104.80269 * 23.97922 * 18 17 14 20 20 C 1.44423 * 105.27376 * 319.48521 * 19 18 17 21 21 C 1.53011 * 109.46714 * 60.00227 * 12 11 10 22 22 C 1.52991 * 109.47192 * 144.91865 * 9 7 2 23 23 H 0.97003 * 120.00104 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47041 * 24.91789 * 9 7 2 25 25 H 1.08998 * 109.47246 * 60.00255 * 10 9 7 26 26 H 1.09005 * 109.46559 * 179.97438 * 10 9 7 27 27 H 1.08999 * 109.47076 * 180.02562 * 11 10 9 28 28 H 1.08998 * 109.47218 * 60.00228 * 11 10 9 29 29 H 1.08991 * 109.47428 * 300.00263 * 12 11 10 30 30 H 1.00896 * 111.00735 * 345.44157 * 13 12 11 31 31 H 1.09004 * 109.47102 * 178.37005 * 15 14 13 32 32 H 1.08999 * 109.46982 * 298.36788 * 15 14 13 33 33 H 0.96706 * 113.99442 * 184.96525 * 16 15 14 34 34 H 1.08999 * 110.51567 * 359.97438 * 17 14 13 35 35 H 1.09002 * 110.51795 * 122.71183 * 17 14 13 36 36 H 1.09002 * 110.36999 * 142.80919 * 18 17 14 37 37 H 1.08993 * 110.37619 * 265.14355 * 18 17 14 38 38 H 1.08995 * 110.37199 * 281.68018 * 20 19 18 39 39 H 1.09000 * 110.37204 * 159.34250 * 20 19 18 40 40 H 1.08994 * 109.46473 * 180.02562 * 21 12 11 41 41 H 1.08991 * 109.47144 * 59.99862 * 21 12 11 42 42 H 1.09006 * 109.47465 * 179.97438 * 22 9 7 43 43 H 1.08999 * 109.47081 * 299.99998 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4485 2.0741 1.3990 5 1 3.5699 1.4267 -0.6514 6 1 1.4714 2.6383 -0.7475 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0020 9 6 3.5115 -1.1942 0.0000 10 6 4.0220 -1.3209 -1.4367 11 6 3.5122 -2.6287 -2.0455 12 6 4.0220 -3.8098 -1.2171 13 7 3.5320 -5.0653 -1.8014 14 6 4.6273 -5.8164 -2.4291 15 6 4.0938 -7.0911 -3.0861 16 8 3.1064 -6.7475 -4.0603 17 6 5.7155 -6.1591 -1.3873 18 6 6.9797 -5.4463 -1.9168 19 8 6.4792 -4.3729 -2.7433 20 6 5.3626 -4.9372 -3.4648 21 6 3.5113 -3.6829 0.2197 22 6 4.0212 -2.3751 0.8285 23 1 -0.4850 0.8401 -0.0004 24 1 3.8747 -0.2624 0.4338 25 1 3.6589 -0.4795 -2.0269 26 1 5.1120 -1.3205 -1.4363 27 1 3.8763 -2.7192 -3.0689 28 1 2.4222 -2.6287 -2.0459 29 1 5.1119 -3.8098 -1.2167 30 1 2.7884 -4.8915 -2.4608 31 1 4.9140 -7.6206 -3.5711 32 1 3.6467 -7.7318 -2.3261 33 1 2.6697 -7.5103 -4.4637 34 1 5.4411 -5.7709 -0.4065 35 1 5.8753 -7.2364 -1.3420 36 1 7.5648 -5.0464 -1.0886 37 1 7.5821 -6.1335 -2.5109 38 1 5.7169 -5.5463 -4.2964 39 1 4.7053 -4.1462 -3.8258 40 1 3.8749 -4.5240 0.8099 41 1 2.4214 -3.6829 0.2193 42 1 5.1112 -2.3754 0.8285 43 1 3.6575 -2.2848 1.8520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:48 Heat of formation + Delta-G solvation = -103.789577 kcal Electronic energy + Delta-G solvation = -22634.268767 eV Core-core repulsion = 19485.752955 eV Total energy + Delta-G solvation = -3148.515812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40699 -37.64713 -36.82830 -34.40566 -32.26107 -31.07924 -29.85839 -29.30794 -27.26381 -25.58995 -24.32618 -22.87568 -21.53091 -20.69358 -19.56123 -18.61172 -17.54533 -16.61379 -16.18775 -15.91553 -15.51654 -15.06745 -14.60950 -14.13088 -13.94782 -13.54157 -13.44713 -13.05865 -12.58916 -12.41528 -12.10128 -11.91891 -11.68373 -11.58280 -11.42678 -11.22708 -11.11195 -11.00117 -10.73473 -10.46896 -10.18388 -10.09717 -10.06514 -9.71154 -9.51573 -9.22524 -8.96697 -8.60058 -8.40418 -7.88140 -5.95127 -3.92023 3.35424 3.44414 3.48318 3.85345 4.09954 4.33654 4.52865 4.57764 4.81075 4.97225 5.04512 5.12560 5.28480 5.36102 5.46258 5.51040 5.61335 5.63552 5.74437 5.77791 5.96404 6.03629 6.11509 6.31968 6.35691 6.47425 6.49213 6.60341 6.71901 6.76719 6.88915 6.93076 7.10997 7.23570 7.27255 7.37748 7.45730 7.62962 7.64540 7.84923 7.95648 8.68306 9.12209 9.69543 11.18057 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027170 B = 0.005627 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.296415 B = 4975.059497 C = 5299.520078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.873 3.127 4 H -0.280 1.280 5 H -0.264 1.264 6 H -0.292 1.292 7 C -0.497 4.497 8 H 0.078 0.922 9 C 0.008 3.992 10 C -0.102 4.102 11 C -0.121 4.121 12 C 0.082 3.918 13 N -0.668 5.668 14 C 0.089 3.911 15 C 0.093 3.907 16 O -0.569 6.569 17 C -0.146 4.146 18 C 0.042 3.958 19 O -0.367 6.367 20 C 0.022 3.978 21 C -0.092 4.092 22 C -0.100 4.100 23 H 0.260 0.740 24 H 0.027 0.973 25 H 0.046 0.954 26 H 0.029 0.971 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.351 0.649 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.380 0.620 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.039 0.961 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.725 -14.967 -5.920 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.134 4.134 3 Si 0.701 3.299 4 H -0.207 1.207 5 H -0.188 1.188 6 H -0.219 1.219 7 C -0.535 4.535 8 H 0.096 0.904 9 C -0.011 4.011 10 C -0.140 4.140 11 C -0.160 4.160 12 C -0.026 4.026 13 N -0.299 5.299 14 C -0.004 4.004 15 C 0.015 3.985 16 O -0.374 6.374 17 C -0.184 4.184 18 C -0.036 4.036 19 O -0.286 6.286 20 C -0.057 4.057 21 C -0.130 4.130 22 C -0.139 4.139 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.171 0.829 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.226 0.774 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.850 -14.379 -5.177 19.338 hybrid contribution 0.256 0.705 -1.003 1.253 sum 12.106 -13.673 -6.180 19.280 Atomic orbital electron populations 1.69910 1.06224 1.26547 1.51859 1.25075 0.94635 0.98798 0.94903 0.86922 0.80546 0.84195 0.78245 1.20654 1.18814 1.21862 1.21082 0.88799 0.94252 1.49331 0.90375 1.19194 0.96988 0.93781 0.91113 1.21613 0.96817 0.96052 0.99561 1.21958 1.02348 0.95462 0.96192 1.21747 0.99424 0.86346 0.95123 1.60719 1.09293 1.22536 1.37328 1.22311 0.92320 0.93449 0.92315 1.22206 0.90596 0.95348 0.90382 1.86476 1.55980 1.37067 1.57878 1.23031 0.93758 1.01039 1.00549 1.23431 0.95907 0.89720 0.94497 1.89184 1.47404 1.33634 1.58337 1.24282 0.88655 0.98101 0.94648 1.21411 1.02245 0.95804 0.93567 1.21463 0.97050 0.96032 0.99320 0.92998 0.95482 0.93499 0.95235 0.94700 0.90399 0.90428 0.82867 0.93539 0.92468 0.77355 0.88714 0.90434 0.89026 0.92652 0.92690 0.88480 0.94245 0.90792 0.95080 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.92 13.96 55.43 0.77 -27.14 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.87 22.02 26.79 -169.99 -4.55 17.47 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.26 -6.40 6.47 56.52 0.37 -6.04 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.50 -13.68 7.32 -34.43 -0.25 -13.93 16 8 H 0.08 2.32 6.26 -52.49 -0.33 1.99 16 9 C 0.01 0.19 2.15 -91.77 -0.20 0.00 16 10 C -0.10 -2.23 5.38 -26.73 -0.14 -2.37 16 11 C -0.12 -2.42 4.72 -26.73 -0.13 -2.54 16 12 C 0.08 1.45 1.25 -67.71 -0.08 1.36 16 13 N -0.67 -10.32 6.03 -91.47 -0.55 -10.87 16 14 C 0.09 1.12 0.91 -130.03 -0.12 1.00 16 15 C 0.09 0.93 5.88 37.16 0.22 1.15 16 16 O -0.57 -5.96 12.76 -35.23 -0.45 -6.41 16 17 C -0.15 -1.63 5.77 -25.16 -0.15 -1.77 16 18 C 0.04 0.46 7.36 37.94 0.28 0.74 16 19 O -0.37 -5.43 10.06 -35.23 -0.35 -5.78 16 20 C 0.02 0.29 5.97 37.93 0.23 0.52 16 21 C -0.09 -1.78 5.31 -26.73 -0.14 -1.92 16 22 C -0.10 -2.07 5.44 -26.74 -0.15 -2.22 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.03 0.66 5.37 -51.93 -0.28 0.38 16 25 H 0.05 1.08 7.69 -51.93 -0.40 0.68 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.65 6.09 -51.93 -0.32 0.33 16 28 H 0.08 1.75 7.17 -51.93 -0.37 1.38 16 29 H 0.08 1.37 4.57 -51.93 -0.24 1.13 16 30 H 0.35 5.77 7.51 -39.29 -0.30 5.47 16 31 H 0.05 0.38 8.11 -51.93 -0.42 -0.04 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.38 2.21 9.12 45.56 0.42 2.62 16 34 H 0.09 1.21 6.95 -51.93 -0.36 0.85 16 35 H 0.08 0.67 7.73 -51.93 -0.40 0.27 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.67 7.85 -51.93 -0.41 0.26 16 39 H 0.10 1.48 5.81 -51.93 -0.30 1.18 16 40 H 0.04 0.69 7.92 -51.93 -0.41 0.28 16 41 H 0.07 1.63 6.30 -51.93 -0.33 1.30 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 314.80 15.07 4.74 4.74 Total: -1.00 -31.43 314.80 -7.27 -38.70 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.15 Total: 7.46 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -0.73 Total: -18.16 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.22 Total: -38.02 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.80 Total: -12.19 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.55 Total: 17.47 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.43 -7.27 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.092 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds