Wall clock time and date at job start Mon Mar 30 2020 01:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48503 * 109.47086 * 87.72558 * 3 2 1 5 5 H 1.48502 * 109.47413 * 207.72716 * 3 2 1 6 6 H 1.48501 * 109.47109 * 327.72964 * 3 2 1 7 7 C 1.37886 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00319 * 0.06667 * 7 2 1 9 9 C 1.50706 * 119.99851 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46730 * 264.92048 * 9 7 2 11 11 C 1.52997 * 109.47100 * 299.99745 * 10 9 7 12 12 C 1.53004 * 109.47257 * 300.00136 * 11 10 9 13 13 N 1.46897 * 109.46889 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99467 * 109.39419 * 13 12 11 15 15 C 1.53005 * 110.45538 * 182.45897 * 14 13 12 16 16 O 1.42902 * 109.47072 * 58.36634 * 15 14 13 17 17 C 1.54503 * 110.51315 * 59.85568 * 14 13 12 18 18 C 1.54486 * 104.05898 * 241.35198 * 17 14 13 19 19 O 1.44426 * 104.80269 * 23.97922 * 18 17 14 20 20 C 1.44423 * 105.27376 * 319.48521 * 19 18 17 21 21 C 1.53011 * 109.46714 * 60.00227 * 12 11 10 22 22 C 1.52991 * 109.47192 * 144.91865 * 9 7 2 23 23 H 0.97003 * 120.00104 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47041 * 24.91789 * 9 7 2 25 25 H 1.08998 * 109.47246 * 60.00255 * 10 9 7 26 26 H 1.09005 * 109.46559 * 179.97438 * 10 9 7 27 27 H 1.08999 * 109.47076 * 180.02562 * 11 10 9 28 28 H 1.08998 * 109.47218 * 60.00228 * 11 10 9 29 29 H 1.08991 * 109.47428 * 300.00263 * 12 11 10 30 30 H 1.00896 * 111.00735 * 345.44157 * 13 12 11 31 31 H 1.09004 * 109.47102 * 178.37005 * 15 14 13 32 32 H 1.08999 * 109.46982 * 298.36788 * 15 14 13 33 33 H 0.96706 * 113.99442 * 184.96525 * 16 15 14 34 34 H 1.08999 * 110.51567 * 359.97438 * 17 14 13 35 35 H 1.09002 * 110.51795 * 122.71183 * 17 14 13 36 36 H 1.09002 * 110.36999 * 142.80919 * 18 17 14 37 37 H 1.08993 * 110.37619 * 265.14355 * 18 17 14 38 38 H 1.08995 * 110.37199 * 281.68018 * 20 19 18 39 39 H 1.09000 * 110.37204 * 159.34250 * 20 19 18 40 40 H 1.08994 * 109.46473 * 180.02562 * 21 12 11 41 41 H 1.08991 * 109.47144 * 59.99862 * 21 12 11 42 42 H 1.09006 * 109.47465 * 179.97438 * 22 9 7 43 43 H 1.08999 * 109.47081 * 299.99998 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4485 2.0741 1.3990 5 1 3.5699 1.4267 -0.6514 6 1 1.4714 2.6383 -0.7475 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0020 9 6 3.5115 -1.1942 0.0000 10 6 4.0220 -1.3209 -1.4367 11 6 3.5122 -2.6287 -2.0455 12 6 4.0220 -3.8098 -1.2171 13 7 3.5320 -5.0653 -1.8014 14 6 4.6273 -5.8164 -2.4291 15 6 4.0938 -7.0911 -3.0861 16 8 3.1064 -6.7475 -4.0603 17 6 5.7155 -6.1591 -1.3873 18 6 6.9797 -5.4463 -1.9168 19 8 6.4792 -4.3729 -2.7433 20 6 5.3626 -4.9372 -3.4648 21 6 3.5113 -3.6829 0.2197 22 6 4.0212 -2.3751 0.8285 23 1 -0.4850 0.8401 -0.0004 24 1 3.8747 -0.2624 0.4338 25 1 3.6589 -0.4795 -2.0269 26 1 5.1120 -1.3205 -1.4363 27 1 3.8763 -2.7192 -3.0689 28 1 2.4222 -2.6287 -2.0459 29 1 5.1119 -3.8098 -1.2167 30 1 2.7884 -4.8915 -2.4608 31 1 4.9140 -7.6206 -3.5711 32 1 3.6467 -7.7318 -2.3261 33 1 2.6697 -7.5103 -4.4637 34 1 5.4411 -5.7709 -0.4065 35 1 5.8753 -7.2364 -1.3420 36 1 7.5648 -5.0464 -1.0886 37 1 7.5821 -6.1335 -2.5109 38 1 5.7169 -5.5463 -4.2964 39 1 4.7053 -4.1462 -3.8258 40 1 3.8749 -4.5240 0.8099 41 1 2.4214 -3.6829 0.2193 42 1 5.1112 -2.3754 0.8285 43 1 3.6575 -2.2848 1.8520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:48 Heat of formation + Delta-G solvation = -128.818092 kcal Electronic energy + Delta-G solvation = -22635.354085 eV Core-core repulsion = 19485.752955 eV Total energy + Delta-G solvation = -3149.601130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47461 -39.21689 -37.63507 -35.72556 -34.19316 -32.40827 -31.48804 -30.45875 -28.73354 -26.54010 -26.22070 -23.85207 -23.10443 -22.24614 -20.70382 -20.38085 -18.38850 -18.28227 -17.49469 -17.02962 -16.48236 -16.41048 -15.97048 -15.64956 -15.35184 -15.05741 -14.81753 -14.40416 -14.12660 -13.88937 -13.68737 -13.31045 -13.14044 -12.88874 -12.74505 -12.66328 -12.43382 -12.34729 -12.09243 -11.85447 -11.81457 -11.68270 -11.50045 -10.99683 -10.89777 -10.85435 -10.64691 -10.55882 -10.51381 -9.15355 -8.19369 -6.19308 1.34027 1.36973 1.47892 2.40129 2.96080 3.16507 3.17210 3.37323 3.68843 3.85116 4.04549 4.13033 4.16055 4.24846 4.32378 4.37108 4.51391 4.59355 4.66277 4.68871 4.71513 4.73053 4.84549 4.87592 4.88790 4.91437 4.98606 5.11997 5.14477 5.20937 5.28187 5.45295 5.51214 5.53581 5.59962 5.82289 5.85411 5.89399 6.27917 6.46195 6.54275 6.88569 6.95924 7.44758 8.97190 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027170 B = 0.005627 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.296415 B = 4975.059497 C = 5299.520078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.004 3.996 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.246 1.246 6 H -0.294 1.294 7 C -0.486 4.486 8 H 0.042 0.958 9 C 0.003 3.997 10 C -0.100 4.100 11 C -0.114 4.114 12 C 0.098 3.902 13 N -0.670 5.670 14 C 0.081 3.919 15 C 0.096 3.904 16 O -0.591 6.591 17 C -0.142 4.142 18 C 0.038 3.962 19 O -0.396 6.396 20 C 0.024 3.976 21 C -0.087 4.087 22 C -0.099 4.099 23 H 0.260 0.740 24 H 0.025 0.975 25 H 0.030 0.970 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.343 0.657 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.399 0.601 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.059 0.941 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.660 -16.355 -6.268 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.191 4.191 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.170 1.170 6 H -0.220 1.220 7 C -0.524 4.524 8 H 0.060 0.940 9 C -0.016 4.016 10 C -0.139 4.139 11 C -0.153 4.153 12 C -0.011 4.011 13 N -0.300 5.300 14 C -0.011 4.011 15 C 0.018 3.982 16 O -0.400 6.400 17 C -0.180 4.180 18 C -0.039 4.039 19 O -0.315 6.315 20 C -0.055 4.055 21 C -0.125 4.125 22 C -0.137 4.137 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.162 0.838 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.808 -15.802 -5.528 22.351 hybrid contribution -0.678 1.022 -0.919 1.532 sum 14.131 -14.780 -6.447 21.440 Atomic orbital electron populations 1.70062 1.08056 1.27372 1.54309 1.25894 0.95359 1.02632 0.95239 0.85928 0.79807 0.79662 0.78666 1.19760 1.16995 1.22027 1.21304 0.91063 0.92718 1.47315 0.93955 1.19240 0.94227 0.95160 0.92959 1.21545 0.98035 0.96364 0.97946 1.21866 0.99990 0.95935 0.97479 1.21493 0.99503 0.86460 0.93624 1.60685 1.10281 1.21280 1.37775 1.22553 0.91777 0.94005 0.92752 1.22210 0.91442 0.93873 0.90644 1.86432 1.56484 1.38917 1.58158 1.23037 0.93011 1.02950 0.98974 1.23655 0.96066 0.89413 0.94746 1.89144 1.47748 1.35539 1.59046 1.24217 0.88354 0.97534 0.95362 1.21333 0.99862 0.96034 0.95251 1.21419 0.98695 0.95202 0.98366 0.93105 0.95697 0.95159 0.93007 0.93408 0.94005 0.89438 0.83794 0.90764 0.91894 0.75120 0.90348 0.87373 0.88296 0.90149 0.90981 0.90972 0.92087 0.94478 0.92189 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.19 13.96 21.45 0.30 -60.89 16 2 C 0.00 0.23 5.47 84.66 0.46 0.70 16 3 Si 0.93 45.85 26.79 68.60 1.84 47.69 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.25 -11.30 6.47 99.48 0.64 -10.65 16 6 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 7 C -0.49 -27.62 7.32 25.60 0.19 -27.43 16 8 H 0.04 2.67 6.26 -2.91 -0.02 2.65 16 9 C 0.00 0.14 2.15 -11.54 -0.02 0.12 16 10 C -0.10 -4.32 5.38 30.59 0.16 -4.16 16 11 C -0.11 -4.58 4.72 30.59 0.14 -4.44 16 12 C 0.10 3.39 1.25 44.92 0.06 3.45 16 13 N -0.67 -20.18 6.03 -443.32 -2.68 -22.85 16 14 C 0.08 1.85 0.91 4.54 0.00 1.86 16 15 C 0.10 1.63 5.88 71.98 0.42 2.06 16 16 O -0.59 -11.24 12.76 -148.98 -1.90 -13.14 16 17 C -0.14 -2.67 5.77 31.61 0.18 -2.49 16 18 C 0.04 0.70 7.36 72.49 0.53 1.24 16 19 O -0.40 -10.66 10.06 -148.98 -1.50 -12.16 16 20 C 0.02 0.59 5.97 72.48 0.43 1.03 16 21 C -0.09 -3.31 5.31 30.60 0.16 -3.15 16 22 C -0.10 -3.96 5.44 30.59 0.17 -3.80 16 23 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 24 H 0.02 1.18 5.37 -2.38 -0.01 1.16 16 25 H 0.03 1.37 7.69 -2.39 -0.02 1.35 16 26 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.05 1.78 6.09 -2.39 -0.01 1.76 16 28 H 0.04 1.96 7.17 -2.39 -0.02 1.94 16 29 H 0.09 2.90 4.57 -2.39 -0.01 2.89 16 30 H 0.34 11.36 7.51 -89.70 -0.67 10.69 16 31 H 0.07 0.88 8.11 -2.39 -0.02 0.86 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.40 3.80 9.12 -74.05 -0.68 3.12 16 34 H 0.08 1.76 6.95 -2.39 -0.02 1.75 16 35 H 0.11 1.37 7.73 -2.39 -0.02 1.35 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.53 7.85 -2.39 -0.02 1.52 16 39 H 0.07 2.14 5.81 -2.39 -0.01 2.13 16 40 H 0.06 2.06 7.92 -2.39 -0.02 2.04 16 41 H 0.04 1.69 6.30 -2.39 -0.02 1.67 16 42 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -69.96 314.80 -1.43 -71.40 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -0.39 Total: 24.97 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 2.90 Total: -35.02 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -2.38 Total: -83.74 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -3.40 Total: -25.29 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.84 Total: 47.69 kcal Total: -69.96 -1.43 -71.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.421 kcal (2) G-P(sol) polarization free energy of solvation -69.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds