Wall clock time and date at job start Mon Mar 30 2020 01:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47160 * 269.99980 * 3 2 1 5 5 H 1.48507 * 109.46746 * 29.99933 * 3 2 1 6 6 H 1.48495 * 109.47013 * 149.99619 * 3 2 1 7 7 C 1.37882 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00319 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99234 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46532 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46806 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47332 * 299.99788 * 11 10 9 13 13 N 1.46900 * 109.47554 * 180.02562 * 12 11 10 14 14 C 1.46900 * 111.00207 * 140.28763 * 13 12 11 15 15 C 1.53003 * 110.43632 * 190.31130 * 14 13 12 16 16 O 1.42898 * 109.47384 * 303.53182 * 15 14 13 17 17 C 1.54807 * 110.48720 * 313.00642 * 14 13 12 18 18 C 1.54993 * 102.09504 * 97.79536 * 17 14 13 19 19 O 1.44385 * 103.49162 * 37.02151 * 18 17 14 20 20 C 1.43746 * 106.97418 * 319.94332 * 19 18 17 21 21 C 1.53009 * 109.47002 * 60.00332 * 12 11 10 22 22 C 1.52995 * 109.46806 * 299.99990 * 21 12 11 23 23 H 0.96992 * 120.00547 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46919 * 60.00713 * 9 7 2 25 25 H 1.08993 * 109.47242 * 60.00198 * 10 9 7 26 26 H 1.08999 * 109.47101 * 299.99691 * 10 9 7 27 27 H 1.08999 * 109.47504 * 179.97438 * 11 10 9 28 28 H 1.09001 * 109.47513 * 59.99702 * 11 10 9 29 29 H 1.08999 * 109.47470 * 300.00197 * 12 11 10 30 30 H 1.00899 * 111.00031 * 264.24798 * 13 12 11 31 31 H 1.09004 * 109.46617 * 63.53551 * 15 14 13 32 32 H 1.08995 * 109.46957 * 183.52747 * 15 14 13 33 33 H 0.96698 * 113.99692 * 183.36669 * 16 15 14 34 34 H 1.09000 * 110.90191 * 215.99144 * 17 14 13 35 35 H 1.09000 * 110.90688 * 339.59140 * 17 14 13 36 36 H 1.09003 * 110.61680 * 278.52405 * 18 17 14 37 37 H 1.08993 * 110.75612 * 155.58675 * 18 17 14 38 38 H 1.09005 * 109.87359 * 267.08851 * 20 19 18 39 39 H 1.08997 * 110.00586 * 146.00824 * 20 19 18 40 40 H 1.08993 * 109.47242 * 60.00064 * 21 12 11 41 41 H 1.08999 * 109.47101 * 180.02562 * 21 12 11 42 42 H 1.09001 * 109.47513 * 300.00298 * 22 21 12 43 43 H 1.08999 * 109.47504 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0022 12 6 6.0626 -1.9148 -1.2463 13 7 7.5316 -1.9153 -1.2455 14 6 8.0587 -2.1461 -2.5971 15 6 9.5670 -2.3984 -2.5463 16 8 10.2130 -1.2967 -1.9054 17 6 7.3295 -3.3360 -3.2671 18 6 6.2670 -2.6174 -4.1372 19 8 6.9579 -1.4407 -4.6092 20 6 7.7431 -0.9464 -3.5113 21 6 5.5525 -0.4722 -1.2462 22 6 4.0226 -0.4723 -1.2474 23 1 -0.4850 0.8399 -0.0004 24 1 3.8745 -0.6800 0.8912 25 1 3.6587 -3.1502 -0.8892 26 1 3.6580 -3.1506 0.8907 27 1 5.9150 -3.6641 0.0026 28 1 5.9142 -2.1229 0.8927 29 1 5.7000 -2.4283 -2.1368 30 1 7.8932 -1.0567 -0.8580 31 1 9.7638 -3.3118 -1.9849 32 1 9.9517 -2.5053 -3.5605 33 1 11.1773 -1.3646 -1.8837 34 1 8.0153 -3.9126 -3.8879 35 1 6.8550 -3.9721 -2.5199 36 1 5.4023 -2.3389 -3.5348 37 1 5.9638 -3.2461 -4.9743 38 1 7.1763 -0.1977 -2.9579 39 1 8.6701 -0.5095 -3.8827 40 1 5.9151 0.0413 -0.3558 41 1 5.9162 0.0418 -2.1359 42 1 3.6599 -0.9859 -2.1379 43 1 3.6591 0.5553 -1.2478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:50 Heat of formation + Delta-G solvation = -87.399146 kcal Electronic energy + Delta-G solvation = -22583.490858 eV Core-core repulsion = 19435.685789 eV Total energy + Delta-G solvation = -3147.805070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71480 -37.75756 -36.89251 -34.68849 -32.51121 -30.95924 -30.25925 -29.81544 -27.71870 -25.73093 -23.98503 -22.86230 -21.86701 -20.74753 -19.75395 -19.09250 -17.54709 -17.04945 -16.61388 -16.13188 -15.48323 -15.08987 -14.64681 -14.54848 -14.12966 -13.56822 -13.30726 -13.15759 -12.87137 -12.83351 -12.49376 -12.28178 -11.83760 -11.80910 -11.66279 -11.35714 -11.25146 -11.00642 -10.73618 -10.51208 -10.29455 -10.21678 -10.03817 -9.80941 -9.51449 -9.47359 -9.07381 -8.83683 -8.49475 -8.19649 -6.03993 -4.02243 3.29279 3.40044 3.42294 3.78935 3.89901 4.24046 4.35400 4.44154 4.69591 4.86719 5.00110 5.02628 5.18602 5.19428 5.28146 5.37102 5.39137 5.56643 5.64168 5.69558 5.73858 5.84404 5.86168 5.97514 6.07979 6.20294 6.23372 6.30424 6.43674 6.57334 6.65843 6.69498 6.80062 6.92847 7.04124 7.20710 7.33506 7.39643 7.52835 7.61788 7.83102 8.57169 9.00917 9.59569 11.09537 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.005494 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.258189 B = 5094.999718 C = 5131.805202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.014 3.986 10 C -0.099 4.099 11 C -0.101 4.101 12 C 0.065 3.935 13 N -0.665 5.665 14 C 0.088 3.912 15 C 0.098 3.902 16 O -0.569 6.569 17 C -0.147 4.147 18 C 0.032 3.968 19 O -0.376 6.376 20 C 0.012 3.988 21 C -0.151 4.151 22 C -0.114 4.114 23 H 0.262 0.738 24 H 0.025 0.975 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.350 0.650 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.378 0.622 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.883 -5.542 -6.334 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.005 4.005 10 C -0.137 4.137 11 C -0.139 4.139 12 C -0.043 4.043 13 N -0.296 5.296 14 C -0.004 4.004 15 C 0.020 3.980 16 O -0.374 6.374 17 C -0.185 4.185 18 C -0.044 4.044 19 O -0.295 6.295 20 C -0.067 4.067 21 C -0.189 4.189 22 C -0.152 4.152 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.170 0.830 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.225 0.775 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.153 -5.810 -6.275 20.976 hybrid contribution 0.762 1.670 -0.346 1.868 sum 19.915 -4.140 -6.621 21.392 Atomic orbital electron populations 1.69902 1.06284 1.26825 1.51212 1.25033 0.94658 0.99007 0.94589 0.86848 0.79915 0.83692 0.77763 1.20780 1.22669 1.19079 1.21107 0.89058 0.94335 1.50430 0.90928 1.19149 0.96313 0.92041 0.92953 1.21449 0.92393 0.98909 1.00956 1.21539 0.96553 0.99092 0.96740 1.22136 0.85606 0.96127 1.00450 1.60685 1.08027 1.42898 1.17964 1.22325 0.93580 0.94605 0.89939 1.22146 0.90802 0.89320 0.95777 1.86462 1.23918 1.45545 1.81506 1.23220 0.98367 0.97389 0.99537 1.23979 0.95306 0.86627 0.98480 1.88858 1.62197 1.43823 1.34619 1.24335 0.96040 0.97192 0.89122 1.22476 0.99158 0.96613 1.00692 1.21908 0.91637 1.00271 1.01421 0.92774 0.95694 0.93005 0.92586 0.92789 0.92571 0.89199 0.83024 0.92600 0.93333 0.77476 0.90024 0.88471 0.90332 0.88753 0.90978 0.89806 0.92297 0.92898 0.92418 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 2 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 3 Si 0.89 22.45 24.37 -169.99 -4.14 18.31 16 4 H -0.28 -6.97 6.87 56.52 0.39 -6.58 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.27 -6.45 6.53 56.52 0.37 -6.09 16 7 C -0.51 -14.37 9.14 -34.44 -0.31 -14.68 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.01 0.33 1.69 -91.77 -0.16 0.18 16 10 C -0.10 -1.93 5.14 -26.73 -0.14 -2.07 16 11 C -0.10 -1.64 5.53 -26.73 -0.15 -1.79 16 12 C 0.07 0.99 1.63 -67.71 -0.11 0.88 16 13 N -0.66 -8.81 5.92 -91.51 -0.54 -9.35 16 14 C 0.09 1.03 0.88 -130.07 -0.11 0.91 16 15 C 0.10 0.92 5.87 37.16 0.22 1.14 16 16 O -0.57 -5.37 12.88 -35.23 -0.45 -5.82 16 17 C -0.15 -1.59 5.70 -24.73 -0.14 -1.73 16 18 C 0.03 0.40 7.19 38.21 0.27 0.67 16 19 O -0.38 -5.45 11.52 -35.23 -0.41 -5.86 16 20 C 0.01 0.15 6.60 37.73 0.25 0.40 16 21 C -0.15 -2.64 4.85 -26.73 -0.13 -2.77 16 22 C -0.11 -2.45 4.68 -26.73 -0.13 -2.58 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.35 2.82 -51.93 -0.15 1.20 16 30 H 0.35 4.83 7.85 -39.29 -0.31 4.52 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.38 1.83 9.12 45.56 0.42 2.25 16 34 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 35 H 0.10 1.07 7.26 -51.93 -0.38 0.70 16 36 H 0.08 1.09 5.73 -51.93 -0.30 0.80 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.05 4.54 -51.93 -0.24 0.81 16 39 H 0.08 1.03 7.59 -51.93 -0.39 0.64 16 40 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 41 H 0.05 0.88 5.24 -51.93 -0.27 0.61 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.04 1.05 3.27 -51.93 -0.17 0.88 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -31.64 311.58 -6.78 -38.42 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.97 Total: 6.36 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -0.73 Total: -19.55 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.23 Total: -36.56 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.86 Total: -11.68 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.64 -6.78 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.983 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds