Wall clock time and date at job start Mon Mar 30 2020 01:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47160 * 269.99980 * 3 2 1 5 5 H 1.48507 * 109.46746 * 29.99933 * 3 2 1 6 6 H 1.48495 * 109.47013 * 149.99619 * 3 2 1 7 7 C 1.37882 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00319 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99234 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46532 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46806 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47332 * 299.99788 * 11 10 9 13 13 N 1.46900 * 109.47554 * 180.02562 * 12 11 10 14 14 C 1.46900 * 111.00207 * 140.28763 * 13 12 11 15 15 C 1.53003 * 110.43632 * 190.31130 * 14 13 12 16 16 O 1.42898 * 109.47384 * 303.53182 * 15 14 13 17 17 C 1.54807 * 110.48720 * 313.00642 * 14 13 12 18 18 C 1.54993 * 102.09504 * 97.79536 * 17 14 13 19 19 O 1.44385 * 103.49162 * 37.02151 * 18 17 14 20 20 C 1.43746 * 106.97418 * 319.94332 * 19 18 17 21 21 C 1.53009 * 109.47002 * 60.00332 * 12 11 10 22 22 C 1.52995 * 109.46806 * 299.99990 * 21 12 11 23 23 H 0.96992 * 120.00547 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46919 * 60.00713 * 9 7 2 25 25 H 1.08993 * 109.47242 * 60.00198 * 10 9 7 26 26 H 1.08999 * 109.47101 * 299.99691 * 10 9 7 27 27 H 1.08999 * 109.47504 * 179.97438 * 11 10 9 28 28 H 1.09001 * 109.47513 * 59.99702 * 11 10 9 29 29 H 1.08999 * 109.47470 * 300.00197 * 12 11 10 30 30 H 1.00899 * 111.00031 * 264.24798 * 13 12 11 31 31 H 1.09004 * 109.46617 * 63.53551 * 15 14 13 32 32 H 1.08995 * 109.46957 * 183.52747 * 15 14 13 33 33 H 0.96698 * 113.99692 * 183.36669 * 16 15 14 34 34 H 1.09000 * 110.90191 * 215.99144 * 17 14 13 35 35 H 1.09000 * 110.90688 * 339.59140 * 17 14 13 36 36 H 1.09003 * 110.61680 * 278.52405 * 18 17 14 37 37 H 1.08993 * 110.75612 * 155.58675 * 18 17 14 38 38 H 1.09005 * 109.87359 * 267.08851 * 20 19 18 39 39 H 1.08997 * 110.00586 * 146.00824 * 20 19 18 40 40 H 1.08993 * 109.47242 * 60.00064 * 21 12 11 41 41 H 1.08999 * 109.47101 * 180.02562 * 21 12 11 42 42 H 1.09001 * 109.47513 * 300.00298 * 22 21 12 43 43 H 1.08999 * 109.47504 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0022 12 6 6.0626 -1.9148 -1.2463 13 7 7.5316 -1.9153 -1.2455 14 6 8.0587 -2.1461 -2.5971 15 6 9.5670 -2.3984 -2.5463 16 8 10.2130 -1.2967 -1.9054 17 6 7.3295 -3.3360 -3.2671 18 6 6.2670 -2.6174 -4.1372 19 8 6.9579 -1.4407 -4.6092 20 6 7.7431 -0.9464 -3.5113 21 6 5.5525 -0.4722 -1.2462 22 6 4.0226 -0.4723 -1.2474 23 1 -0.4850 0.8399 -0.0004 24 1 3.8745 -0.6800 0.8912 25 1 3.6587 -3.1502 -0.8892 26 1 3.6580 -3.1506 0.8907 27 1 5.9150 -3.6641 0.0026 28 1 5.9142 -2.1229 0.8927 29 1 5.7000 -2.4283 -2.1368 30 1 7.8932 -1.0567 -0.8580 31 1 9.7638 -3.3118 -1.9849 32 1 9.9517 -2.5053 -3.5605 33 1 11.1773 -1.3646 -1.8837 34 1 8.0153 -3.9126 -3.8879 35 1 6.8550 -3.9721 -2.5199 36 1 5.4023 -2.3389 -3.5348 37 1 5.9638 -3.2461 -4.9743 38 1 7.1763 -0.1977 -2.9579 39 1 8.6701 -0.5095 -3.8827 40 1 5.9151 0.0413 -0.3558 41 1 5.9162 0.0418 -2.1359 42 1 3.6599 -0.9859 -2.1379 43 1 3.6591 0.5553 -1.2478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:50 Heat of formation + Delta-G solvation = -113.311433 kcal Electronic energy + Delta-G solvation = -22584.614500 eV Core-core repulsion = 19435.685789 eV Total energy + Delta-G solvation = -3148.928711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.73697 -39.19366 -37.62305 -35.98158 -34.39778 -32.28507 -31.75073 -30.91198 -29.11074 -26.60747 -25.78494 -23.93241 -23.23602 -22.26856 -20.88683 -20.44765 -18.77442 -18.22405 -18.11942 -17.20178 -16.88266 -16.22803 -16.04803 -15.39742 -15.21972 -15.00888 -14.94672 -14.73098 -14.44308 -14.05333 -13.90982 -13.37827 -13.33607 -13.00952 -12.83941 -12.72321 -12.46037 -12.27347 -12.09345 -12.04580 -11.84136 -11.62938 -11.60828 -11.13642 -10.95713 -10.89035 -10.69097 -10.68287 -10.39574 -9.34018 -8.31315 -6.33357 1.26057 1.31199 1.41747 2.29691 2.82764 3.04372 3.16451 3.28740 3.50798 3.75340 3.79764 3.96197 4.07704 4.11154 4.19459 4.30925 4.44378 4.49892 4.51267 4.61751 4.64356 4.69823 4.75434 4.78559 4.79026 4.85362 4.90189 4.93503 5.00649 5.11463 5.23030 5.27202 5.35944 5.43043 5.60877 5.70112 5.75487 5.80907 6.13742 6.33181 6.44064 6.74816 6.97344 7.32076 8.85800 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.005494 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.258189 B = 5094.999718 C = 5131.805202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.273 1.273 5 H -0.300 1.300 6 H -0.248 1.248 7 C -0.515 4.515 8 H 0.034 0.966 9 C 0.014 3.986 10 C -0.095 4.095 11 C -0.091 4.091 12 C 0.073 3.927 13 N -0.656 5.656 14 C 0.085 3.915 15 C 0.103 3.897 16 O -0.587 6.587 17 C -0.141 4.141 18 C 0.026 3.974 19 O -0.396 6.396 20 C 0.010 3.990 21 C -0.143 4.143 22 C -0.112 4.112 23 H 0.264 0.736 24 H 0.018 0.982 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.349 0.651 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.398 0.602 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.243 -5.912 -6.916 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.228 1.228 6 H -0.172 1.172 7 C -0.553 4.553 8 H 0.053 0.947 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.129 4.129 12 C -0.036 4.036 13 N -0.287 5.287 14 C -0.007 4.007 15 C 0.025 3.975 16 O -0.396 6.396 17 C -0.178 4.178 18 C -0.050 4.050 19 O -0.315 6.315 20 C -0.068 4.068 21 C -0.181 4.181 22 C -0.150 4.150 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.168 0.832 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.248 0.752 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 22.558 -6.196 -6.857 24.378 hybrid contribution -0.334 1.717 -0.182 1.759 sum 22.224 -4.479 -7.039 23.738 Atomic orbital electron populations 1.70047 1.08104 1.27828 1.53254 1.25853 0.95354 1.02794 0.94520 0.85850 0.79166 0.79142 0.78269 1.19926 1.22751 1.17234 1.21483 0.91885 0.92799 1.49176 0.94723 1.19119 0.93026 0.94831 0.93540 1.21358 0.95119 0.96188 1.00610 1.21422 0.93576 1.00648 0.97243 1.21991 0.87133 0.94352 1.00135 1.60671 1.06213 1.42663 1.19154 1.22483 0.95463 0.94240 0.88559 1.22088 0.88951 0.89515 0.96987 1.86410 1.25867 1.45697 1.81588 1.23226 0.98125 0.97023 0.99450 1.24077 0.95099 0.86519 0.99319 1.88843 1.62546 1.44695 1.35370 1.24353 0.95857 0.97503 0.89077 1.22418 0.95841 0.98613 1.01277 1.21769 0.94720 0.98602 0.99909 0.92694 0.96381 0.93197 0.93243 0.90578 0.92676 0.88671 0.83162 0.91716 0.91616 0.75176 0.87536 0.88459 0.92353 0.86991 0.92717 0.89035 0.92193 0.91895 0.93061 0.95422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 2 C 0.01 0.68 5.45 84.66 0.46 1.14 16 3 Si 0.95 46.85 24.37 68.60 1.67 48.52 16 4 H -0.27 -13.04 6.87 99.48 0.68 -12.35 16 5 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 6 H -0.25 -11.45 6.53 99.48 0.65 -10.80 16 7 C -0.52 -29.85 9.14 25.60 0.23 -29.61 16 8 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 9 C 0.01 0.63 1.69 -11.54 -0.02 0.61 16 10 C -0.09 -3.64 5.14 30.60 0.16 -3.48 16 11 C -0.09 -2.74 5.53 30.59 0.17 -2.58 16 12 C 0.07 2.05 1.63 44.92 0.07 2.12 16 13 N -0.66 -15.42 5.92 -443.44 -2.63 -18.04 16 14 C 0.08 1.71 0.88 4.52 0.00 1.71 16 15 C 0.10 1.52 5.87 71.98 0.42 1.94 16 16 O -0.59 -9.02 12.88 -148.98 -1.92 -10.94 16 17 C -0.14 -2.56 5.70 31.89 0.18 -2.37 16 18 C 0.03 0.58 7.19 72.66 0.52 1.10 16 19 O -0.40 -10.67 11.52 -148.98 -1.72 -12.39 16 20 C 0.01 0.25 6.60 72.36 0.48 0.73 16 21 C -0.14 -4.75 4.85 30.60 0.15 -4.60 16 22 C -0.11 -4.73 4.68 30.59 0.14 -4.59 16 23 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 24 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 2.65 2.82 -2.39 -0.01 2.65 16 30 H 0.35 8.60 7.85 -89.69 -0.70 7.89 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.40 2.45 9.12 -74.06 -0.68 1.78 16 34 H 0.11 1.43 7.88 -2.39 -0.02 1.41 16 35 H 0.10 1.81 7.26 -2.39 -0.02 1.79 16 36 H 0.06 1.55 5.73 -2.39 -0.01 1.54 16 37 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 1.49 4.54 -2.38 -0.01 1.48 16 39 H 0.09 2.02 7.59 -2.39 -0.02 2.00 16 40 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 41 H 0.06 1.99 5.24 -2.39 -0.01 1.98 16 42 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.03 1.26 3.27 -2.39 -0.01 1.25 16 Total: -1.00 -69.54 311.58 -1.75 -71.29 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -0.43 Total: 20.00 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 2.98 Total: -37.87 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -2.33 Total: -78.61 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -3.64 Total: -23.33 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.67 Total: 48.52 kcal Total: -69.54 -1.75 -71.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.022 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds