Wall clock time and date at job start Mon Mar 30 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48497 * 109.46916 * 269.99832 * 3 2 1 5 5 H 1.48494 * 109.47056 * 29.99827 * 3 2 1 6 6 H 1.48501 * 109.46824 * 149.99839 * 3 2 1 7 7 C 1.37883 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99693 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47620 * 300.00056 * 10 9 7 12 12 C 1.53009 * 109.46829 * 300.00135 * 11 10 9 13 13 N 1.46899 * 109.46934 * 179.97438 * 12 11 10 14 14 C 1.46823 * 111.00248 * 70.83327 * 13 12 11 15 15 C 1.53295 * 109.40012 * 170.24585 * 14 13 12 16 16 C 1.51435 * 108.24651 * 53.79712 * 15 14 13 17 17 O 1.20757 * 121.11163 * 130.69671 * 16 15 14 18 18 C 1.51440 * 117.77291 * 310.97281 * 16 15 14 19 19 H 1.09000 * 109.70894 * 289.33979 * 18 16 15 20 20 F 1.39899 * 109.70671 * 168.71074 * 18 16 15 21 21 C 1.46829 * 110.99918 * 306.14707 * 13 12 11 22 22 C 1.52998 * 109.46723 * 59.99862 * 12 11 10 23 23 C 1.52996 * 109.47581 * 299.99678 * 22 12 11 24 24 H 0.96995 * 120.00211 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46693 * 299.99823 * 9 7 2 26 26 H 1.09007 * 109.46871 * 179.97438 * 10 9 7 27 27 H 1.09002 * 109.47574 * 60.00399 * 10 9 7 28 28 H 1.08994 * 109.47520 * 180.02562 * 11 10 9 29 29 H 1.08994 * 109.47339 * 59.99923 * 11 10 9 30 30 H 1.08994 * 109.46987 * 300.00003 * 12 11 10 31 31 H 1.09004 * 109.48127 * 50.26968 * 14 13 12 32 32 H 1.09000 * 109.48834 * 290.22498 * 14 13 12 33 33 H 1.09004 * 109.71077 * 294.10408 * 15 14 13 34 34 H 1.09002 * 109.70994 * 173.48916 * 15 14 13 35 35 H 1.08998 * 109.48963 * 309.73327 * 21 13 12 36 36 H 1.09007 * 109.48231 * 69.76333 * 21 13 12 37 37 H 1.09004 * 109.47266 * 60.00518 * 22 12 11 38 38 H 1.09011 * 109.46724 * 180.02562 * 22 12 11 39 39 H 1.09007 * 109.47059 * 300.00481 * 23 22 12 40 40 H 1.08994 * 109.47520 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4993 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 3.1248 -3.5812 -1.2486 12 6 2.2451 -3.6622 -2.4979 13 7 3.0897 -3.5839 -3.6973 14 6 3.8773 -4.8112 -3.8674 15 6 4.5538 -4.7956 -5.2429 16 6 5.3363 -3.5055 -5.3718 17 8 6.4873 -3.5078 -5.7370 18 6 4.6290 -2.2132 -5.0213 19 1 3.8800 -1.9865 -5.7801 20 9 5.5593 -1.1708 -4.9494 21 6 3.9476 -2.3929 -3.6599 22 6 1.2510 -2.4992 -2.4979 23 6 0.3713 -2.5802 -1.2487 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5567 0.8903 26 1 1.7001 -4.6061 0.0010 27 1 2.8718 -3.6045 0.8905 28 1 3.8328 -4.4099 -1.2488 29 1 3.6698 -2.6373 -1.2487 30 1 1.7001 -4.6061 -2.4979 31 1 3.2200 -5.6779 -3.7954 32 1 4.6380 -4.8660 -3.0888 33 1 3.7967 -4.8462 -6.0256 34 1 5.2301 -5.6461 -5.3297 35 1 3.3413 -1.5148 -3.4380 36 1 4.7063 -2.5156 -2.8868 37 1 1.7960 -1.5553 -2.4980 38 1 0.6240 -2.5573 -3.3877 39 1 -0.1738 -3.5242 -1.2487 40 1 -0.3372 -1.7520 -1.2489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:12 Heat of formation + Delta-G solvation = -95.638485 kcal Electronic energy + Delta-G solvation = -22046.159914 eV Core-core repulsion = 18774.537255 eV Total energy + Delta-G solvation = -3271.622659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.74048 -39.98860 -38.69387 -36.18309 -32.70386 -31.26089 -30.62078 -29.70658 -27.68475 -24.78145 -23.92202 -23.09612 -21.58453 -20.52270 -19.31198 -18.52882 -16.77476 -16.42669 -16.24144 -15.72824 -15.27493 -15.02033 -14.73980 -14.48150 -13.82148 -13.71289 -13.36231 -13.32196 -13.12809 -12.73923 -12.20206 -12.08889 -11.82211 -11.47637 -11.45903 -11.24326 -11.05970 -10.92074 -10.89658 -10.56949 -10.31892 -10.14629 -9.65223 -9.49244 -9.30191 -8.99350 -8.69089 -8.30686 -8.10380 -5.99582 -4.04382 1.65456 3.28489 3.36594 3.39631 3.59408 3.79437 4.42354 4.49612 4.58159 4.75713 4.86897 5.06807 5.24084 5.30893 5.35426 5.49476 5.57639 5.58600 5.64292 5.81103 5.88895 5.94346 6.16134 6.34242 6.40395 6.51670 6.59594 6.70195 6.77589 6.90642 7.02357 7.14626 7.19433 7.28993 7.44590 7.52828 7.71658 7.90851 8.13575 8.45478 8.98129 9.59468 11.06101 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.006642 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.645154 B = 4214.371152 C = 5079.319204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.880 3.120 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.503 4.503 8 H 0.053 0.947 9 C 0.043 3.957 10 C -0.102 4.102 11 C -0.139 4.139 12 C 0.095 3.905 13 N -0.534 5.534 14 C 0.054 3.946 15 C -0.159 4.159 16 C 0.339 3.661 17 O -0.442 6.442 18 C 0.049 3.951 19 H 0.124 0.876 20 F -0.194 7.194 21 C 0.032 3.968 22 C -0.092 4.092 23 C -0.107 4.107 24 H 0.259 0.741 25 H 0.024 0.976 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.015 0.985 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -8.837 -8.767 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.708 3.292 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.024 3.976 10 C -0.140 4.140 11 C -0.178 4.178 12 C -0.012 4.012 13 N -0.257 5.257 14 C -0.074 4.074 15 C -0.197 4.197 16 C 0.213 3.787 17 O -0.313 6.313 18 C 0.011 3.989 19 H 0.141 0.859 20 F -0.175 7.175 21 C -0.096 4.096 22 C -0.130 4.130 23 C -0.146 4.146 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.361 -8.646 -9.365 13.471 hybrid contribution 1.011 0.980 0.716 1.580 sum 5.372 -7.665 -8.650 12.745 Atomic orbital electron populations 1.69852 1.05791 1.26250 1.50945 1.24913 0.94732 0.98718 0.95396 0.86782 0.80022 0.84173 0.78213 1.20636 1.21304 1.20048 1.21116 0.92579 0.90440 1.49966 0.92904 1.18700 0.92663 0.91979 0.94232 1.21488 0.98129 0.98758 0.95674 1.22102 0.98269 1.00959 0.96464 1.21811 0.93391 1.00530 0.85479 1.62019 1.21940 1.00739 1.41006 1.22110 0.96728 0.94279 0.94283 1.22374 1.00889 0.96052 1.00377 1.25604 0.88000 0.93048 0.72056 1.90425 1.18136 1.89273 1.33494 1.22291 0.90308 0.84375 1.01887 0.85896 1.92863 1.67804 1.59114 1.97673 1.22680 0.97009 0.96875 0.93084 1.21443 0.96525 0.97126 0.97880 1.21515 0.98691 0.99578 0.94772 0.93097 0.95751 0.94770 0.93640 0.94628 0.90743 0.90693 0.89159 0.93940 0.87153 0.88624 0.87091 0.92663 0.90958 0.93914 0.96673 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.22 11.32 55.43 0.63 -23.59 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.88 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.50 -12.70 6.61 -34.44 -0.23 -12.93 16 8 H 0.05 1.34 6.71 -52.48 -0.35 0.99 16 9 C 0.04 0.98 2.59 -91.77 -0.24 0.75 16 10 C -0.10 -1.97 5.41 -26.74 -0.14 -2.11 16 11 C -0.14 -2.38 4.25 -26.73 -0.11 -2.49 16 12 C 0.09 1.49 2.19 -67.71 -0.15 1.34 16 13 N -0.53 -7.14 4.51 -226.39 -1.02 -8.16 16 14 C 0.05 0.59 5.10 -3.71 -0.02 0.57 16 15 C -0.16 -1.54 6.35 -27.37 -0.17 -1.71 16 16 C 0.34 4.42 6.75 -28.31 -0.19 4.22 16 17 O -0.44 -7.17 17.52 6.00 0.11 -7.07 16 18 C 0.05 0.65 4.33 -27.36 -0.12 0.53 16 19 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 20 F -0.19 -3.13 16.80 2.25 0.04 -3.10 16 21 C 0.03 0.47 4.20 -3.71 -0.02 0.45 16 22 C -0.09 -1.72 4.93 -26.73 -0.13 -1.85 16 23 C -0.11 -2.31 5.23 -26.73 -0.14 -2.45 16 24 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.54 6.94 -51.93 -0.36 0.18 16 29 H 0.07 1.41 5.02 -51.93 -0.26 1.15 16 30 H 0.07 1.13 7.92 -51.93 -0.41 0.72 16 31 H 0.09 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.04 0.50 7.05 -51.93 -0.37 0.13 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.11 1.78 6.09 -51.93 -0.32 1.46 16 36 H 0.06 0.85 6.79 -51.93 -0.35 0.50 16 37 H 0.07 1.51 5.45 -51.93 -0.28 1.23 16 38 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 40 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 LS Contribution 303.68 15.07 4.58 4.58 Total: -1.00 -27.92 303.68 -8.40 -36.32 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.95 Total: -0.48 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.76 Total: -14.11 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: -0.39 Total: -31.75 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.11 Total: -7.07 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.92 -8.40 -36.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.320 kcal (2) G-P(sol) polarization free energy of solvation -27.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds