Wall clock time and date at job start Mon Mar 30 2020 00:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99846 * 2 1 4 4 H 1.48504 * 109.47300 * 239.99734 * 3 2 1 5 5 H 1.48504 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99780 * 3 2 1 7 7 C 1.37871 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00203 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47261 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47187 * 300.00346 * 10 9 7 12 12 C 1.53008 * 109.46747 * 299.99811 * 11 10 9 13 13 N 1.46899 * 109.46826 * 180.02562 * 12 11 10 14 14 C 1.46847 * 110.99862 * 175.00223 * 13 12 11 15 15 C 1.53044 * 109.51335 * 174.15436 * 14 13 12 16 16 C 1.53119 * 109.27589 * 59.18419 * 15 14 13 17 17 S 1.81400 * 109.51934 * 182.37556 * 16 15 14 18 18 C 1.53120 * 109.16202 * 302.34077 * 16 15 14 19 19 C 1.46847 * 110.99299 * 50.79381 * 13 12 11 20 20 C 1.52999 * 109.47122 * 60.00150 * 12 11 10 21 21 C 1.52995 * 109.46957 * 299.99973 * 20 12 11 22 22 H 0.96998 * 119.99532 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47145 * 300.00191 * 9 7 2 24 24 H 1.08996 * 109.47272 * 180.02562 * 10 9 7 25 25 H 1.09006 * 109.46922 * 59.99927 * 10 9 7 26 26 H 1.08995 * 109.46944 * 180.02562 * 11 10 9 27 27 H 1.08996 * 109.47260 * 59.99692 * 11 10 9 28 28 H 1.08996 * 109.47144 * 299.99953 * 12 11 10 29 29 H 1.09002 * 109.46448 * 54.14158 * 14 13 12 30 30 H 1.08994 * 109.45958 * 294.16523 * 14 13 12 31 31 H 1.09000 * 109.49745 * 179.12223 * 15 14 13 32 32 H 1.08999 * 109.49729 * 299.20033 * 15 14 13 33 33 H 1.08993 * 109.52284 * 62.25342 * 16 15 14 34 34 H 1.34492 * 103.00090 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.50328 * 177.59853 * 18 16 15 36 36 H 1.08996 * 109.50004 * 297.72216 * 18 16 15 37 37 H 1.09005 * 109.46836 * 65.83946 * 19 13 12 38 38 H 1.08995 * 109.45748 * 305.85482 * 19 13 12 39 39 H 1.09005 * 109.47169 * 59.99874 * 20 12 11 40 40 H 1.08994 * 109.47231 * 179.97438 * 20 12 11 41 41 H 1.09004 * 109.47357 * 299.99469 * 21 20 12 42 42 H 1.09003 * 109.47463 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 3.1260 -3.5815 -1.2467 12 6 2.2473 -3.6631 -2.4967 13 7 3.0929 -3.5864 -3.6955 14 6 2.2969 -3.7804 -4.9142 15 6 3.1794 -3.5501 -6.1432 16 6 4.3521 -4.5342 -6.1150 17 16 5.4408 -4.2205 -7.5316 18 6 5.1362 -4.3446 -4.8135 19 6 4.1970 -4.5518 -3.6231 20 6 1.2531 -2.5002 -2.4980 21 6 0.3725 -2.5807 -1.2494 22 1 -0.4849 0.8401 -0.0004 23 1 0.6240 -2.5567 0.8903 24 1 1.7004 -4.6060 0.0014 25 1 2.8713 -3.6038 0.8923 26 1 3.8340 -4.4102 -1.2460 27 1 3.6710 -2.6375 -1.2467 28 1 1.7024 -4.6071 -2.4967 29 1 1.4688 -3.0717 -4.9237 30 1 1.9049 -4.7972 -4.9339 31 1 2.5923 -3.7093 -7.0476 32 1 3.5601 -2.5288 -6.1314 33 1 3.9725 -5.5546 -6.1663 34 1 6.4087 -5.1418 -7.3792 35 1 5.9472 -5.0714 -4.7681 36 1 5.5482 -3.3360 -4.7807 37 1 3.7960 -5.5651 -3.6490 38 1 4.7489 -4.4033 -2.6950 39 1 1.7981 -1.5562 -2.4980 40 1 0.6274 -2.5581 -3.3886 41 1 -0.1726 -3.5247 -1.2494 42 1 -0.3356 -1.7520 -1.2500 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:10 Heat of formation + Delta-G solvation = -16.084420 kcal Electronic energy + Delta-G solvation = -19778.636313 eV Core-core repulsion = 17076.676553 eV Total energy + Delta-G solvation = -2701.959760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.40703 -37.00481 -33.53674 -31.75121 -31.16694 -29.44241 -28.23332 -24.95305 -23.81187 -23.45054 -20.93556 -20.54984 -19.74527 -18.62736 -17.55531 -16.04489 -15.71492 -15.10484 -14.69518 -14.64517 -14.07842 -13.87791 -13.65380 -13.36393 -12.97892 -12.64685 -12.38223 -12.06248 -11.51512 -11.44793 -11.27608 -11.22386 -10.90435 -10.81369 -10.70813 -10.56663 -10.47802 -10.21929 -10.04987 -9.97514 -9.56992 -9.13476 -8.79281 -8.55986 -8.23582 -8.20838 -7.92854 -5.90350 -3.94124 1.48524 2.57703 3.37649 3.42128 3.45631 4.12734 4.51167 4.55197 4.58746 4.99773 5.17632 5.36121 5.40454 5.41207 5.49324 5.55089 5.64645 5.68064 5.78488 5.96140 6.03022 6.05920 6.08591 6.25167 6.31980 6.47548 6.55473 6.58519 6.73661 6.78143 6.84796 7.11660 7.23979 7.42556 7.45619 7.58163 7.70976 7.80610 7.99242 8.21460 8.54958 9.07558 9.69021 11.15672 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.004922 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.797860 B = 5687.839538 C = 6070.279121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.884 3.116 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.498 4.498 8 H 0.054 0.946 9 C 0.044 3.956 10 C -0.106 4.106 11 C -0.102 4.102 12 C 0.096 3.904 13 N -0.531 5.531 14 C 0.059 3.941 15 C -0.095 4.095 16 C -0.030 4.030 17 S -0.255 6.255 18 C -0.113 4.113 19 C 0.054 3.946 20 C -0.090 4.090 21 C -0.107 4.107 22 H 0.258 0.742 23 H 0.023 0.977 24 H 0.030 0.970 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.024 0.976 29 H 0.089 0.911 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.026 0.974 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.031 0.969 41 H 0.010 0.990 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 -9.728 -10.562 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.712 3.288 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.026 3.974 10 C -0.144 4.144 11 C -0.139 4.139 12 C -0.011 4.011 13 N -0.256 5.256 14 C -0.071 4.071 15 C -0.134 4.134 16 C -0.159 4.159 17 S -0.100 6.100 18 C -0.153 4.153 19 C -0.076 4.076 20 C -0.128 4.128 21 C -0.146 4.146 22 H 0.068 0.932 23 H 0.041 0.959 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.107 0.893 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.029 0.971 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.919 -8.824 -11.378 15.975 hybrid contribution 0.386 -0.946 0.851 1.330 sum 7.305 -9.770 -10.527 16.113 Atomic orbital electron populations 1.69857 1.05827 1.26224 1.51335 1.24911 0.94726 0.98743 0.95469 0.86792 0.79713 0.83727 0.78582 1.20218 1.21516 1.20529 1.21090 0.92665 0.90356 1.49502 0.92746 1.18683 0.92636 0.92089 0.94014 1.21559 0.98299 0.98586 0.95995 1.21579 0.97254 1.01299 0.93796 1.21675 0.93440 0.97705 0.88316 1.61977 1.11319 1.49988 1.02312 1.22099 0.95943 0.99859 0.89174 1.21445 0.94294 0.99543 0.98129 1.23079 0.96819 1.02900 0.93107 1.87463 1.31760 1.50850 1.39970 1.22027 0.97092 1.03588 0.92593 1.22153 0.93517 0.93407 0.98497 1.21428 0.96021 0.98281 0.97048 1.21523 0.98716 0.99236 0.95101 0.93178 0.95915 0.95102 0.93439 0.94553 0.90190 0.95775 0.89305 0.95376 0.90709 0.89644 0.89851 0.95390 0.92291 0.89354 0.95589 0.89421 0.90138 0.95034 0.97093 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 11.32 55.43 0.63 -24.37 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.88 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.50 -13.03 6.61 -34.44 -0.23 -13.26 16 8 H 0.05 1.42 6.71 -52.48 -0.35 1.07 16 9 C 0.04 1.06 2.59 -91.77 -0.24 0.83 16 10 C -0.11 -2.15 5.41 -26.73 -0.14 -2.30 16 11 C -0.10 -1.87 4.44 -26.73 -0.12 -1.99 16 12 C 0.10 1.69 1.96 -67.71 -0.13 1.55 16 13 N -0.53 -8.10 4.52 -226.68 -1.03 -9.13 16 14 C 0.06 0.78 5.29 -3.83 -0.02 0.76 16 15 C -0.10 -1.09 5.39 -26.65 -0.14 -1.23 16 16 C -0.03 -0.32 3.04 -26.61 -0.08 -0.40 16 17 S -0.25 -2.81 25.25 -107.50 -2.71 -5.53 16 18 C -0.11 -1.28 5.39 -26.65 -0.14 -1.42 16 19 C 0.05 0.71 5.01 -3.83 -0.02 0.69 16 20 C -0.09 -1.83 4.90 -26.73 -0.13 -1.96 16 21 C -0.11 -2.45 5.24 -26.73 -0.14 -2.59 16 22 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 23 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.58 6.18 -51.93 -0.32 0.26 16 27 H 0.08 1.64 6.62 -51.93 -0.34 1.30 16 28 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16 29 H 0.09 1.24 6.18 -51.93 -0.32 0.92 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.83 9.07 97.61 0.89 1.72 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 1.18 5.83 -51.93 -0.30 0.87 16 39 H 0.08 1.87 7.22 -51.93 -0.37 1.49 16 40 H 0.03 0.59 6.40 -51.93 -0.33 0.25 16 41 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 LS Contribution 318.78 15.07 4.80 4.80 Total: -1.00 -26.50 318.78 -10.95 -37.45 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.98 Total: 0.42 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -1.63 Total: -19.75 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: -0.40 Total: -33.49 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.71 Total: -5.53 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.50 -10.95 -37.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.363 kcal (2) G-P(sol) polarization free energy of solvation -26.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds