Wall clock time and date at job start Mon Mar 30 2020 00:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99846 * 2 1 4 4 H 1.48504 * 109.47300 * 239.99734 * 3 2 1 5 5 H 1.48504 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99780 * 3 2 1 7 7 C 1.37871 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00203 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47261 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47187 * 300.00346 * 10 9 7 12 12 C 1.53008 * 109.46747 * 299.99811 * 11 10 9 13 13 N 1.46899 * 109.46826 * 180.02562 * 12 11 10 14 14 C 1.46847 * 110.99862 * 175.00223 * 13 12 11 15 15 C 1.53044 * 109.51335 * 174.15436 * 14 13 12 16 16 C 1.53119 * 109.27589 * 59.18419 * 15 14 13 17 17 S 1.81400 * 109.51934 * 182.37556 * 16 15 14 18 18 C 1.53120 * 109.16202 * 302.34077 * 16 15 14 19 19 C 1.46847 * 110.99299 * 50.79381 * 13 12 11 20 20 C 1.52999 * 109.47122 * 60.00150 * 12 11 10 21 21 C 1.52995 * 109.46957 * 299.99973 * 20 12 11 22 22 H 0.96998 * 119.99532 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47145 * 300.00191 * 9 7 2 24 24 H 1.08996 * 109.47272 * 180.02562 * 10 9 7 25 25 H 1.09006 * 109.46922 * 59.99927 * 10 9 7 26 26 H 1.08995 * 109.46944 * 180.02562 * 11 10 9 27 27 H 1.08996 * 109.47260 * 59.99692 * 11 10 9 28 28 H 1.08996 * 109.47144 * 299.99953 * 12 11 10 29 29 H 1.09002 * 109.46448 * 54.14158 * 14 13 12 30 30 H 1.08994 * 109.45958 * 294.16523 * 14 13 12 31 31 H 1.09000 * 109.49745 * 179.12223 * 15 14 13 32 32 H 1.08999 * 109.49729 * 299.20033 * 15 14 13 33 33 H 1.08993 * 109.52284 * 62.25342 * 16 15 14 34 34 H 1.34492 * 103.00090 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.50328 * 177.59853 * 18 16 15 36 36 H 1.08996 * 109.50004 * 297.72216 * 18 16 15 37 37 H 1.09005 * 109.46836 * 65.83946 * 19 13 12 38 38 H 1.08995 * 109.45748 * 305.85482 * 19 13 12 39 39 H 1.09005 * 109.47169 * 59.99874 * 20 12 11 40 40 H 1.08994 * 109.47231 * 179.97438 * 20 12 11 41 41 H 1.09004 * 109.47357 * 299.99469 * 21 20 12 42 42 H 1.09003 * 109.47463 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 3.1260 -3.5815 -1.2467 12 6 2.2473 -3.6631 -2.4967 13 7 3.0929 -3.5864 -3.6955 14 6 2.2969 -3.7804 -4.9142 15 6 3.1794 -3.5501 -6.1432 16 6 4.3521 -4.5342 -6.1150 17 16 5.4408 -4.2205 -7.5316 18 6 5.1362 -4.3446 -4.8135 19 6 4.1970 -4.5518 -3.6231 20 6 1.2531 -2.5002 -2.4980 21 6 0.3725 -2.5807 -1.2494 22 1 -0.4849 0.8401 -0.0004 23 1 0.6240 -2.5567 0.8903 24 1 1.7004 -4.6060 0.0014 25 1 2.8713 -3.6038 0.8923 26 1 3.8340 -4.4102 -1.2460 27 1 3.6710 -2.6375 -1.2467 28 1 1.7024 -4.6071 -2.4967 29 1 1.4688 -3.0717 -4.9237 30 1 1.9049 -4.7972 -4.9339 31 1 2.5923 -3.7093 -7.0476 32 1 3.5601 -2.5288 -6.1314 33 1 3.9725 -5.5546 -6.1663 34 1 6.4087 -5.1418 -7.3792 35 1 5.9472 -5.0714 -4.7681 36 1 5.5482 -3.3360 -4.7807 37 1 3.7960 -5.5651 -3.6490 38 1 4.7489 -4.4033 -2.6950 39 1 1.7981 -1.5562 -2.4980 40 1 0.6274 -2.5581 -3.3886 41 1 -0.1726 -3.5247 -1.2494 42 1 -0.3356 -1.7520 -1.2500 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:10 Heat of formation + Delta-G solvation = -29.749060 kcal Electronic energy + Delta-G solvation = -19779.228856 eV Core-core repulsion = 17076.676553 eV Total energy + Delta-G solvation = -2702.552303 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.66194 -38.46033 -35.03649 -33.46322 -32.29458 -30.96533 -29.80324 -26.80241 -25.06759 -24.60323 -22.42858 -21.97943 -20.81359 -20.40219 -18.44473 -17.70708 -17.21904 -16.58837 -16.04754 -15.76052 -15.50137 -15.11576 -14.84567 -14.66651 -14.44834 -14.37732 -13.60976 -13.35385 -13.21510 -12.88596 -12.77564 -12.53525 -12.39880 -12.36466 -12.14449 -12.05536 -11.82880 -11.71198 -11.45459 -11.37357 -10.99859 -10.86648 -10.62118 -10.34761 -10.22914 -9.14893 -9.01702 -7.98187 -6.07071 0.65484 1.44591 1.46188 1.52149 1.77699 2.50117 2.97803 3.30595 3.65372 3.69912 4.06127 4.07696 4.14621 4.28499 4.43187 4.46827 4.50273 4.60342 4.66502 4.72861 4.81241 4.83268 4.87642 4.96045 5.00093 5.01875 5.06537 5.14446 5.16730 5.25030 5.33895 5.45930 5.60707 5.70575 5.77206 5.80082 6.02978 6.24642 6.33102 6.36684 6.51770 7.01999 7.58447 9.06514 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.004922 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.797860 B = 5687.839538 C = 6070.279121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.051 0.949 9 C 0.038 3.962 10 C -0.101 4.101 11 C -0.094 4.094 12 C 0.106 3.894 13 N -0.546 5.546 14 C 0.059 3.941 15 C -0.089 4.089 16 C -0.023 4.023 17 S -0.270 6.270 18 C -0.107 4.107 19 C 0.055 3.945 20 C -0.080 4.080 21 C -0.102 4.102 22 H 0.256 0.744 23 H -0.013 1.013 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.024 0.976 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.873 -11.314 -11.848 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.765 3.235 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.020 3.980 10 C -0.139 4.139 11 C -0.132 4.132 12 C -0.001 4.001 13 N -0.271 5.271 14 C -0.070 4.070 15 C -0.128 4.128 16 C -0.152 4.152 17 S -0.115 6.115 18 C -0.147 4.147 19 C -0.075 4.075 20 C -0.118 4.118 21 C -0.141 4.141 22 H 0.065 0.935 23 H 0.005 0.995 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.345 -10.415 -12.669 18.402 hybrid contribution -0.055 -0.477 1.254 1.342 sum 8.291 -10.892 -11.415 17.823 Atomic orbital electron populations 1.70001 1.06977 1.26570 1.52483 1.25562 0.95397 1.01630 0.95614 0.85925 0.78591 0.80412 0.78604 1.19958 1.21491 1.20011 1.21346 0.92615 0.91458 1.48499 0.93047 1.18690 0.93172 0.93130 0.93048 1.21464 0.97763 0.97529 0.97185 1.21481 0.97272 1.01254 0.93179 1.21401 0.93007 0.96441 0.89278 1.61888 1.11696 1.51530 1.01939 1.22114 0.95802 1.00187 0.88920 1.21365 0.94549 0.98994 0.97885 1.23013 0.96311 1.03288 0.92631 1.87568 1.32462 1.51511 1.40005 1.21969 0.97207 1.03377 0.92126 1.22191 0.92832 0.93355 0.99112 1.21237 0.96230 0.98059 0.96248 1.21369 0.98403 0.98444 0.95886 0.93490 0.99508 0.93298 0.93486 0.91417 0.92656 0.94876 0.90509 0.94122 0.89182 0.91111 0.88460 0.94087 0.90428 0.90742 0.94329 0.89848 0.93517 0.93622 0.95684 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 2 C 0.02 0.86 5.30 84.65 0.45 1.31 16 3 Si 0.94 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.50 -26.74 6.61 25.60 0.17 -26.57 16 8 H 0.05 2.72 6.71 -2.91 -0.02 2.71 16 9 C 0.04 1.86 2.59 -11.54 -0.03 1.83 16 10 C -0.10 -4.00 5.41 30.60 0.17 -3.84 16 11 C -0.09 -3.31 4.44 30.60 0.14 -3.17 16 12 C 0.11 3.57 1.96 44.92 0.09 3.65 16 13 N -0.55 -15.53 4.52 -871.09 -3.94 -19.47 16 14 C 0.06 1.44 5.29 86.33 0.46 1.89 16 15 C -0.09 -1.84 5.39 30.65 0.17 -1.68 16 16 C -0.02 -0.43 3.04 30.67 0.09 -0.34 16 17 S -0.27 -5.29 25.25 -56.49 -1.43 -6.71 16 18 C -0.11 -2.11 5.39 30.65 0.17 -1.95 16 19 C 0.05 1.25 5.01 86.33 0.43 1.69 16 20 C -0.08 -3.24 4.90 30.59 0.15 -3.09 16 21 C -0.10 -4.75 5.24 30.59 0.16 -4.59 16 22 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 23 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.07 1.97 6.18 -2.39 -0.01 1.96 16 27 H 0.05 2.23 6.62 -2.39 -0.02 2.21 16 28 H 0.03 1.07 8.13 -2.39 -0.02 1.06 16 29 H 0.08 2.04 6.18 -2.39 -0.01 2.02 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 1.65 9.07 73.35 0.67 2.32 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.08 1.99 5.83 -2.39 -0.01 1.97 16 39 H 0.05 2.20 7.22 -2.38 -0.02 2.18 16 40 H 0.05 1.69 6.40 -2.39 -0.02 1.67 16 41 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 Total: -1.00 -57.70 318.78 1.16 -56.55 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.66 Total: 11.29 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 2.60 Total: -34.86 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -3.70 Total: -72.30 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.43 Total: -6.71 kcal Total: -57.70 1.16 -56.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.796 kcal (2) G-P(sol) polarization free energy of solvation -57.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds