Wall clock time and date at job start Mon Mar 30 2020 01:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00376 * 180.02562 * 12 11 10 14 14 O 1.21288 * 119.99593 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00115 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.46793 * 299.99519 * 15 13 12 17 17 C 1.52993 * 109.47029 * 59.99996 * 15 13 12 18 18 C 1.52997 * 109.47024 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47232 * 299.99958 * 18 17 15 20 20 C 1.53002 * 109.47143 * 59.99957 * 19 18 17 21 21 C 1.53000 * 109.46911 * 299.99808 * 20 19 18 22 22 H 1.08992 * 109.47399 * 299.99964 * 21 20 19 23 23 C 1.53002 * 109.47233 * 179.97438 * 21 20 19 24 24 O 1.42898 * 109.46622 * 65.00215 * 23 21 20 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 27 27 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 30 30 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 31 31 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 32 32 H 0.97004 * 119.99396 * 0.02562 * 12 11 10 33 33 H 1.09000 * 109.47250 * 300.00019 * 17 15 13 34 34 H 1.09002 * 109.47722 * 60.00092 * 17 15 13 35 35 H 1.09002 * 109.47045 * 60.00016 * 18 17 15 36 36 H 1.09001 * 109.47375 * 180.02562 * 18 17 15 37 37 H 1.09004 * 109.47261 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47153 * 299.99992 * 19 18 17 39 39 H 1.09002 * 109.47067 * 59.99982 * 20 19 18 40 40 H 1.09000 * 109.47312 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.47073 * 185.00312 * 23 21 20 42 42 H 1.09000 * 109.47059 * 305.00404 * 23 21 20 43 43 H 0.96710 * 113.99717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4324 -6.1006 0.0024 13 6 1.9832 -7.3713 0.0024 14 8 0.7907 -7.5929 0.0016 15 6 2.9625 -8.5167 0.0033 16 1 3.5898 -8.4592 -0.8863 17 6 3.8412 -8.4353 1.2531 18 6 4.8350 -9.5986 1.2544 19 6 4.0696 -10.9233 1.2545 20 6 3.1909 -11.0047 0.0047 21 6 2.1970 -9.8415 0.0035 22 1 1.5697 -9.8986 0.8929 23 6 1.3186 -9.9225 -1.2467 24 8 0.5173 -11.1043 -1.1900 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5564 0.8919 28 1 2.8714 -3.6047 -0.8890 29 1 2.8726 -3.6039 0.8910 30 1 0.8541 -5.0447 0.8922 31 1 0.8534 -5.0451 -0.8877 32 1 3.3861 -5.9233 0.0026 33 1 4.3862 -7.4914 1.2533 34 1 3.2140 -8.4929 2.1427 35 1 5.4624 -9.5415 0.3649 36 1 5.4608 -9.5409 2.1451 37 1 4.7777 -11.7521 1.2550 38 1 3.4423 -10.9804 2.1441 39 1 3.8182 -10.9476 -0.8849 40 1 2.6452 -11.9483 0.0050 41 1 0.6716 -9.0466 -1.2934 42 1 1.9512 -9.9546 -2.1338 43 1 -0.0658 -11.2211 -1.9526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184160799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:34 Heat of formation + Delta-G solvation = -132.080896 kcal Electronic energy + Delta-G solvation = -20787.704178 eV Core-core repulsion = 17637.961562 eV Total energy + Delta-G solvation = -3149.742616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47322 -38.03112 -36.41691 -35.43319 -33.37613 -31.82881 -31.63088 -30.65704 -26.94917 -25.65725 -23.88961 -22.78293 -21.39606 -20.76102 -20.30299 -19.63923 -17.34690 -17.04108 -16.41112 -15.66699 -15.40892 -15.20038 -14.85216 -14.48339 -14.36505 -14.17408 -14.07869 -13.18599 -13.08846 -12.64781 -12.43808 -12.29028 -11.85212 -11.84477 -11.75215 -11.47255 -11.22930 -10.94181 -10.85280 -10.75103 -10.59932 -10.56874 -10.35432 -10.11095 -9.89141 -9.60817 -9.24202 -9.09289 -8.76126 -8.39687 -6.03977 -4.07177 2.73102 3.28343 3.34886 3.36784 3.40206 4.04352 4.41522 4.42902 4.48699 4.66597 4.87503 5.01006 5.06014 5.16116 5.18249 5.25397 5.31910 5.34280 5.39780 5.55725 5.70680 5.72422 5.75014 5.77288 5.85324 5.92074 5.97159 6.03734 6.13527 6.15710 6.27033 6.48922 6.57136 6.81083 6.98048 7.58374 7.61364 7.69017 7.73534 7.94726 8.34581 8.38916 8.99766 9.57237 11.07338 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032877 B = 0.003112 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.452177 B = 8995.054006 C = 9659.855205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.724 5.724 13 C 0.508 3.492 14 O -0.539 6.539 15 C -0.102 4.102 16 H 0.096 0.904 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.111 4.111 21 C -0.063 4.063 22 H 0.084 0.916 23 C 0.066 3.934 24 O -0.575 6.575 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.162 -21.644 -0.665 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.375 5.375 13 C 0.294 3.706 14 O -0.417 6.417 15 C -0.123 4.123 16 H 0.114 0.886 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.148 4.148 21 C -0.082 4.082 22 H 0.102 0.898 23 C -0.011 4.011 24 O -0.380 6.380 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.464 -21.730 -0.094 23.320 hybrid contribution 0.603 1.272 -0.596 1.528 sum 9.067 -20.458 -0.690 22.388 Atomic orbital electron populations 1.69973 1.06068 1.26603 1.50618 1.25035 0.94858 0.99332 0.95267 0.86528 0.80047 0.83747 0.77620 1.19747 1.20988 1.20986 1.21241 0.93023 0.90932 1.50852 0.92594 1.19034 0.93855 0.90893 0.97643 1.21885 0.99753 0.93383 1.00841 1.21648 0.91922 0.85204 1.01947 1.46257 1.10774 1.05982 1.74460 1.20628 0.89612 0.84105 0.76227 1.90649 1.16958 1.84509 1.49599 1.21352 0.96750 0.93308 1.00924 0.88571 1.21517 0.97288 0.99210 0.96750 1.21541 0.97517 0.94320 1.02165 1.21581 0.98630 0.97194 0.98575 1.21557 0.96919 0.98558 0.97772 1.20849 0.95543 0.92486 0.99345 0.89792 1.22584 0.93721 0.88498 0.96284 1.86405 1.58353 1.44670 1.48545 0.92962 0.96304 0.96278 0.92765 0.92736 0.91787 0.91828 0.76838 0.91058 0.91142 0.91733 0.91579 0.91957 0.91848 0.92226 0.90999 0.90457 0.94823 0.77782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.12 2.00 5.67 -4.04 -0.02 1.97 16 12 N -0.72 -9.97 5.45 -60.29 -0.33 -10.30 16 13 C 0.51 7.14 6.83 -10.98 -0.08 7.07 16 14 O -0.54 -9.62 13.67 5.55 0.08 -9.54 16 15 C -0.10 -1.05 2.06 -91.77 -0.19 -1.24 16 16 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.11 -0.96 5.10 -26.74 -0.14 -1.09 16 18 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 19 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 20 C -0.11 -1.00 5.10 -26.73 -0.14 -1.14 16 21 C -0.06 -0.70 1.60 -90.62 -0.14 -0.85 16 22 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 23 C 0.07 0.78 6.16 37.16 0.23 1.01 16 24 O -0.57 -6.64 13.19 -35.23 -0.46 -7.11 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.40 4.39 7.89 -40.82 -0.32 4.07 16 33 H 0.07 0.56 7.56 -51.93 -0.39 0.16 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.71 7.82 -51.93 -0.41 0.30 16 41 H 0.08 1.10 5.41 -51.93 -0.28 0.82 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.38 2.75 9.12 45.56 0.42 3.17 16 LS Contribution 341.58 15.07 5.15 5.15 Total: -1.00 -32.65 341.58 -8.20 -40.86 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.87 Total: 2.31 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.48 Total: -11.72 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.41 Total: -36.30 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.39 Total: -16.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.65 -8.20 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184160799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.224 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds