Wall clock time and date at job start Mon Mar 30 2020 01:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00376 * 180.02562 * 12 11 10 14 14 O 1.21288 * 119.99593 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00115 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.46793 * 299.99519 * 15 13 12 17 17 C 1.52993 * 109.47029 * 59.99996 * 15 13 12 18 18 C 1.52997 * 109.47024 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47232 * 299.99958 * 18 17 15 20 20 C 1.53002 * 109.47143 * 59.99957 * 19 18 17 21 21 C 1.53000 * 109.46911 * 299.99808 * 20 19 18 22 22 H 1.08992 * 109.47399 * 299.99964 * 21 20 19 23 23 C 1.53002 * 109.47233 * 179.97438 * 21 20 19 24 24 O 1.42898 * 109.46622 * 65.00215 * 23 21 20 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 27 27 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 30 30 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 31 31 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 32 32 H 0.97004 * 119.99396 * 0.02562 * 12 11 10 33 33 H 1.09000 * 109.47250 * 300.00019 * 17 15 13 34 34 H 1.09002 * 109.47722 * 60.00092 * 17 15 13 35 35 H 1.09002 * 109.47045 * 60.00016 * 18 17 15 36 36 H 1.09001 * 109.47375 * 180.02562 * 18 17 15 37 37 H 1.09004 * 109.47261 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47153 * 299.99992 * 19 18 17 39 39 H 1.09002 * 109.47067 * 59.99982 * 20 19 18 40 40 H 1.09000 * 109.47312 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.47073 * 185.00312 * 23 21 20 42 42 H 1.09000 * 109.47059 * 305.00404 * 23 21 20 43 43 H 0.96710 * 113.99717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4324 -6.1006 0.0024 13 6 1.9832 -7.3713 0.0024 14 8 0.7907 -7.5929 0.0016 15 6 2.9625 -8.5167 0.0033 16 1 3.5898 -8.4592 -0.8863 17 6 3.8412 -8.4353 1.2531 18 6 4.8350 -9.5986 1.2544 19 6 4.0696 -10.9233 1.2545 20 6 3.1909 -11.0047 0.0047 21 6 2.1970 -9.8415 0.0035 22 1 1.5697 -9.8986 0.8929 23 6 1.3186 -9.9225 -1.2467 24 8 0.5173 -11.1043 -1.1900 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5564 0.8919 28 1 2.8714 -3.6047 -0.8890 29 1 2.8726 -3.6039 0.8910 30 1 0.8541 -5.0447 0.8922 31 1 0.8534 -5.0451 -0.8877 32 1 3.3861 -5.9233 0.0026 33 1 4.3862 -7.4914 1.2533 34 1 3.2140 -8.4929 2.1427 35 1 5.4624 -9.5415 0.3649 36 1 5.4608 -9.5409 2.1451 37 1 4.7777 -11.7521 1.2550 38 1 3.4423 -10.9804 2.1441 39 1 3.8182 -10.9476 -0.8849 40 1 2.6452 -11.9483 0.0050 41 1 0.6716 -9.0466 -1.2934 42 1 1.9512 -9.9546 -2.1338 43 1 -0.0658 -11.2211 -1.9526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184160799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:34 Heat of formation + Delta-G solvation = -155.383492 kcal Electronic energy + Delta-G solvation = -20788.714654 eV Core-core repulsion = 17637.961562 eV Total energy + Delta-G solvation = -3150.753092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.49866 -39.01348 -37.26840 -36.93767 -35.21560 -33.25242 -32.49087 -31.78457 -28.63974 -26.65591 -25.21916 -24.05658 -22.36948 -22.16535 -21.31748 -20.64879 -18.60444 -18.21920 -18.02286 -16.92037 -16.71089 -16.42365 -16.07661 -15.84173 -15.47131 -15.07426 -14.99310 -14.34487 -14.23003 -13.93273 -13.77772 -13.51529 -13.37740 -13.14793 -12.78084 -12.60447 -12.55360 -12.35205 -12.25232 -11.95994 -11.69467 -11.64266 -11.49627 -11.34452 -11.23266 -11.05728 -10.97272 -10.57075 -10.33959 -10.03294 -8.20336 -6.31953 1.41580 1.41754 1.55025 1.61243 2.20503 2.42351 3.13611 3.23473 3.60235 3.71371 3.94353 4.07433 4.16364 4.19896 4.29718 4.31972 4.39647 4.45797 4.52727 4.54709 4.54849 4.64898 4.84418 4.93212 4.97132 5.02090 5.07712 5.15978 5.19132 5.26328 5.27858 5.33141 5.43854 5.46587 5.52816 5.56989 5.69618 5.83422 6.21323 6.58661 6.86058 6.87654 7.27292 7.37964 8.92024 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032877 B = 0.003112 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.452177 B = 8995.054006 C = 9659.855205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.713 5.713 13 C 0.505 3.495 14 O -0.582 6.582 15 C -0.090 4.090 16 H 0.125 0.875 17 C -0.109 4.109 18 C -0.112 4.112 19 C -0.122 4.122 20 C -0.103 4.103 21 C -0.064 4.064 22 H 0.052 0.948 23 C 0.067 3.933 24 O -0.589 6.589 25 H 0.263 0.737 26 H -0.009 1.009 27 H -0.010 1.010 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.415 0.585 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.469 -22.065 -1.032 25.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.365 5.365 13 C 0.293 3.707 14 O -0.462 6.462 15 C -0.111 4.111 16 H 0.142 0.858 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.160 4.160 20 C -0.141 4.141 21 C -0.083 4.083 22 H 0.071 0.929 23 C -0.011 4.011 24 O -0.397 6.397 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.252 0.748 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 11.810 -22.171 -0.468 25.125 hybrid contribution -0.519 1.351 -0.491 1.528 sum 11.291 -20.821 -0.958 23.705 Atomic orbital electron populations 1.70118 1.07990 1.27742 1.51787 1.26040 0.95743 1.03623 0.94791 0.85357 0.79257 0.78576 0.77595 1.18063 1.20593 1.20644 1.21717 0.93784 0.91964 1.50301 0.91436 1.18952 0.94472 0.93107 0.94959 1.21591 0.98387 0.91747 1.02172 1.21206 0.92057 0.85780 1.00432 1.46023 1.11095 1.05065 1.74282 1.21379 0.89735 0.84732 0.74826 1.90648 1.19188 1.85094 1.51290 1.21364 0.95959 0.90729 1.03066 0.85764 1.21560 0.97210 1.00937 0.94989 1.21529 0.97062 0.92791 1.03583 1.21592 0.98628 0.98399 0.97346 1.21496 0.96552 0.96801 0.99220 1.20852 0.95790 0.94001 0.97666 0.92930 1.22534 0.93608 0.87395 0.97514 1.86370 1.58909 1.44429 1.49984 0.92824 0.99050 0.99124 0.91246 0.91332 0.93606 0.93361 0.74769 0.89535 0.92801 0.90054 0.90392 0.90335 0.93003 0.90564 0.92103 0.93417 0.92687 0.75898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 43.56 29.54 68.60 2.03 45.58 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -29.95 9.11 25.60 0.23 -29.71 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 11 C 0.13 4.52 5.67 86.38 0.49 5.01 16 12 N -0.71 -18.80 5.45 -463.06 -2.52 -21.32 16 13 C 0.51 13.99 6.83 87.66 0.60 14.59 16 14 O -0.58 -21.49 13.67 -3.05 -0.04 -21.53 16 15 C -0.09 -1.69 2.06 -11.54 -0.02 -1.71 16 16 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 17 C -0.11 -1.64 5.10 30.59 0.16 -1.49 16 18 C -0.11 -1.25 5.92 30.59 0.18 -1.06 16 19 C -0.12 -1.61 5.92 30.59 0.18 -1.43 16 20 C -0.10 -1.67 5.10 30.60 0.16 -1.51 16 21 C -0.06 -1.38 1.60 -10.79 -0.02 -1.40 16 22 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 23 C 0.07 1.55 6.16 71.98 0.44 1.99 16 24 O -0.59 -13.56 13.19 -148.98 -1.97 -15.53 16 25 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 26 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 28 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.42 8.03 7.89 -92.71 -0.73 7.30 16 33 H 0.09 1.06 7.56 -2.39 -0.02 1.04 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.13 7.82 -2.39 -0.02 1.11 16 41 H 0.05 1.40 5.41 -2.39 -0.01 1.39 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.39 5.65 9.12 -74.05 -0.68 4.98 16 Total: -1.00 -72.63 341.58 0.53 -72.10 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -0.42 Total: 16.47 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 3.17 Total: -18.86 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -2.24 Total: -78.23 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -2.01 Total: -37.06 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.63 0.53 -72.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184160799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.281 kcal (2) G-P(sol) polarization free energy of solvation -72.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds