Wall clock time and date at job start Mon Mar 30 2020 01:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 H 1.08998 * 109.47341 * 177.50702 * 3 2 1 5 5 C 1.50696 * 109.47153 * 57.50611 * 3 2 1 6 6 H 1.08002 * 120.00277 * 240.00016 * 5 3 2 7 7 C 1.37883 * 119.99935 * 60.00250 * 5 3 2 8 8 N 1.31515 * 120.00004 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99969 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47116 * 59.99963 * 9 7 5 11 11 H 1.48501 * 109.47103 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47282 * 300.00257 * 9 7 5 13 13 N 1.46898 * 109.46776 * 297.50533 * 3 2 1 14 14 C 1.46896 * 111.00448 * 274.41999 * 13 3 2 15 15 C 1.52971 * 109.43821 * 274.81764 * 14 13 3 16 16 C 1.53084 * 109.47111 * 178.40654 * 15 14 13 17 17 C 1.53072 * 109.16723 * 58.36213 * 16 15 14 18 18 C 1.52967 * 113.20584 * 72.59943 * 17 16 15 19 19 S 1.81435 * 89.87155 * 82.56250 * 18 17 16 20 20 C 1.52943 * 113.24063 * 173.15679 * 17 16 15 21 21 C 1.53064 * 112.24140 * 302.93190 * 17 16 15 22 22 C 1.52954 * 109.44432 * 154.66789 * 14 13 3 23 23 H 1.09002 * 109.47356 * 174.53994 * 1 2 3 24 24 H 1.08998 * 109.46999 * 54.54471 * 1 2 3 25 25 H 1.09001 * 109.47218 * 294.54698 * 1 2 3 26 26 H 1.09000 * 109.47514 * 119.99925 * 2 1 3 27 27 H 1.09006 * 109.47490 * 239.99862 * 2 1 3 28 28 H 0.97001 * 119.99923 * 180.02562 * 8 7 5 29 29 H 1.00907 * 110.99484 * 150.46458 * 13 3 2 30 30 H 1.09004 * 109.44162 * 34.73849 * 14 13 3 31 31 H 1.08994 * 109.46894 * 298.44946 * 15 14 13 32 32 H 1.09001 * 109.47075 * 58.45136 * 15 14 13 33 33 H 1.08994 * 109.55354 * 298.44428 * 16 15 14 34 34 H 1.09005 * 109.51253 * 178.25748 * 16 15 14 35 35 H 1.08997 * 113.14993 * 197.81559 * 18 17 16 36 36 H 1.09004 * 113.15379 * 327.30867 * 18 17 16 37 37 H 1.09004 * 113.15314 * 32.72282 * 20 17 16 38 38 H 1.08995 * 113.15247 * 162.21538 * 20 17 16 39 39 H 1.09001 * 109.51388 * 297.13146 * 21 17 16 40 40 H 1.09000 * 109.51417 * 176.97257 * 21 17 16 41 41 H 1.09002 * 109.47063 * 301.55092 * 22 14 13 42 42 H 1.09000 * 109.47649 * 61.54819 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4429 0.0447 5 6 1.4879 2.1705 1.1983 6 1 0.8718 3.0470 1.0612 7 6 1.7692 1.7178 2.4700 8 7 2.5190 0.6503 2.6370 9 14 1.0854 2.6207 3.9554 10 1 -0.3984 2.6208 3.8948 11 1 1.5294 1.9380 5.1972 12 1 1.5809 4.0205 3.9552 13 7 1.6002 2.1173 -1.2284 14 6 2.5373 1.8664 -2.3315 15 6 3.6817 2.8795 -2.2676 16 6 4.6794 2.5939 -3.3930 17 6 3.9545 2.6708 -4.7389 18 6 3.5952 4.1000 -5.1492 19 16 5.2752 4.3330 -5.7935 20 6 4.8968 2.5645 -5.9389 21 6 2.7688 1.7058 -4.8144 22 6 1.8023 2.0051 -3.6656 23 1 -0.3634 -1.0230 -0.0978 24 1 -0.3633 0.5961 -0.8371 25 1 -0.3634 0.4269 0.9348 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 2.7166 0.3316 3.5316 29 1 1.4801 3.1072 -1.0740 30 1 2.9406 0.8576 -2.2425 31 1 3.2818 3.8869 -2.3827 32 1 4.1869 2.7968 -1.3053 33 1 5.1006 1.5971 -3.2627 34 1 5.4790 3.3342 -3.3672 35 1 2.8294 4.1438 -5.9236 36 1 3.3683 4.7453 -4.3005 37 1 5.7592 1.9248 -5.7512 38 1 4.3830 2.3111 -6.8661 39 1 3.1281 0.6802 -4.7301 40 1 2.2541 1.8350 -5.7665 41 1 0.9710 1.3007 -3.6974 42 1 1.4213 3.0213 -3.7668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205238040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:43 Heat of formation + Delta-G solvation = -2.993656 kcal Electronic energy + Delta-G solvation = -19566.670706 eV Core-core repulsion = 16865.278604 eV Total energy + Delta-G solvation = -2701.392102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.66089 -36.45367 -33.83178 -31.49059 -30.74768 -29.82701 -26.76434 -26.43768 -24.68369 -23.11986 -22.61679 -20.69108 -18.88169 -18.61007 -16.57769 -16.31560 -15.39291 -15.00193 -14.90035 -14.11373 -13.97097 -13.72133 -13.46727 -13.10372 -12.82125 -12.65970 -12.21220 -12.01452 -11.86950 -11.69025 -11.47504 -11.39009 -10.94871 -10.91781 -10.83768 -10.56393 -10.42136 -10.21666 -10.09297 -9.96721 -9.67211 -9.57818 -9.33345 -8.76357 -8.45382 -7.82862 -7.16256 -6.00608 -4.05521 1.72572 1.86963 3.30985 3.36029 3.38549 4.12256 4.41217 4.51205 4.72387 5.02594 5.11804 5.16174 5.29578 5.33327 5.38058 5.40799 5.52076 5.53565 5.68136 5.73358 5.88920 6.06396 6.10034 6.23292 6.24353 6.36177 6.46566 6.55435 6.70901 6.72916 6.74212 6.89841 7.25421 7.36821 7.53175 7.75842 7.81985 7.87568 8.28725 8.43396 8.71258 9.04416 9.59205 11.05345 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.004472 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.709739 B = 6259.562185 C = 6674.407948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.682 5.682 14 C 0.090 3.910 15 C -0.144 4.144 16 C -0.095 4.095 17 C -0.057 4.057 18 C -0.068 4.068 19 S -0.313 6.313 20 C -0.073 4.073 21 C -0.099 4.099 22 C -0.103 4.103 23 H 0.011 0.989 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.009 0.991 28 H 0.260 0.740 29 H 0.329 0.671 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 2.213 -15.070 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.021 4.021 15 C -0.183 4.183 16 C -0.133 4.133 17 C -0.058 4.058 18 C -0.216 4.216 19 S -0.086 6.086 20 C -0.222 4.222 21 C -0.139 4.139 22 C -0.141 4.141 23 H 0.030 0.970 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.919 2.605 -15.339 15.830 hybrid contribution -0.304 0.315 1.244 1.319 sum 2.615 2.920 -14.094 14.629 Atomic orbital electron populations 1.21432 0.97582 0.97008 1.01544 1.21429 0.95040 0.98386 0.99129 1.19094 0.93328 0.91466 0.85139 0.98145 1.21152 1.31574 1.11903 0.90456 0.92504 1.24868 0.95111 0.95001 0.98774 1.69876 1.37572 1.23156 1.22178 0.86675 0.79482 0.79779 0.82145 1.20256 1.21389 1.20441 1.60759 1.47121 1.15753 1.07464 1.21502 0.90664 0.98074 0.91906 1.22275 0.97688 1.00028 0.98307 1.21457 0.97906 1.02559 0.91377 1.21701 0.95496 0.93677 0.94960 1.24484 0.94358 0.99385 1.03360 1.88895 1.21893 1.13259 1.84531 1.24482 1.02122 0.93847 1.01719 1.21554 0.94691 0.98558 0.99092 1.21482 0.97629 1.01711 0.93310 0.97005 0.93467 0.93007 0.89842 0.97255 0.92972 0.85333 0.91268 0.92387 0.91273 0.91341 0.90703 0.88066 0.88430 0.88734 0.88042 0.91220 0.91855 0.91301 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.45 37.16 0.35 -2.27 16 2 C -0.10 -2.40 5.55 -26.73 -0.15 -2.54 16 3 C 0.22 5.16 2.11 -68.87 -0.14 5.02 16 4 H 0.00 0.02 7.12 -51.93 -0.37 -0.35 16 5 C -0.51 -13.38 7.31 -34.44 -0.25 -13.63 16 6 H 0.06 1.48 7.61 -52.49 -0.40 1.08 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.77 11.34 55.43 0.63 -24.14 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.35 5.30 -101.00 -0.54 -13.88 16 14 C 0.09 1.44 2.23 -67.75 -0.15 1.28 16 15 C -0.14 -2.13 5.04 -26.70 -0.13 -2.27 16 16 C -0.09 -1.18 5.01 -26.65 -0.13 -1.31 16 17 C -0.06 -0.60 0.70 -154.48 -0.11 -0.70 16 18 C -0.07 -0.71 6.57 37.14 0.24 -0.47 16 19 S -0.31 -3.75 23.72 -107.50 -2.55 -6.30 16 20 C -0.07 -0.71 7.07 37.13 0.26 -0.45 16 21 C -0.10 -1.02 5.09 -26.66 -0.14 -1.16 16 22 C -0.10 -1.34 5.42 -26.71 -0.14 -1.48 16 23 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.05 1.00 7.52 -51.93 -0.39 0.61 16 25 H 0.05 1.24 7.36 -51.93 -0.38 0.86 16 26 H 0.08 2.21 6.14 -51.93 -0.32 1.89 16 27 H 0.01 0.20 7.45 -51.93 -0.39 -0.19 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.33 6.45 7.96 -39.29 -0.31 6.14 16 30 H 0.07 1.23 7.14 -51.93 -0.37 0.86 16 31 H 0.06 0.83 7.11 -51.93 -0.37 0.47 16 32 H 0.07 1.20 7.43 -51.93 -0.39 0.82 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.96 7.17 -51.93 -0.37 0.59 16 35 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 36 H 0.10 1.09 7.07 -51.93 -0.37 0.72 16 37 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 38 H 0.10 0.83 8.12 -51.93 -0.42 0.41 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.73 7.87 -51.93 -0.41 0.32 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -26.86 326.37 -10.49 -37.35 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.35 Total: 4.49 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -0.59 Total: -18.35 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.09 Total: -38.02 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -2.55 Total: -6.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.86 -10.49 -37.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205238040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.359 kcal (2) G-P(sol) polarization free energy of solvation -26.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds