Wall clock time and date at job start Mon Mar 30 2020 01:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 H 1.08998 * 109.47341 * 177.50702 * 3 2 1 5 5 C 1.50696 * 109.47153 * 57.50611 * 3 2 1 6 6 H 1.08002 * 120.00277 * 240.00016 * 5 3 2 7 7 C 1.37883 * 119.99935 * 60.00250 * 5 3 2 8 8 N 1.31515 * 120.00004 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99969 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47116 * 59.99963 * 9 7 5 11 11 H 1.48501 * 109.47103 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47282 * 300.00257 * 9 7 5 13 13 N 1.46898 * 109.46776 * 297.50533 * 3 2 1 14 14 C 1.46896 * 111.00448 * 274.41999 * 13 3 2 15 15 C 1.52971 * 109.43821 * 274.81764 * 14 13 3 16 16 C 1.53084 * 109.47111 * 178.40654 * 15 14 13 17 17 C 1.53072 * 109.16723 * 58.36213 * 16 15 14 18 18 C 1.52967 * 113.20584 * 72.59943 * 17 16 15 19 19 S 1.81435 * 89.87155 * 82.56250 * 18 17 16 20 20 C 1.52943 * 113.24063 * 173.15679 * 17 16 15 21 21 C 1.53064 * 112.24140 * 302.93190 * 17 16 15 22 22 C 1.52954 * 109.44432 * 154.66789 * 14 13 3 23 23 H 1.09002 * 109.47356 * 174.53994 * 1 2 3 24 24 H 1.08998 * 109.46999 * 54.54471 * 1 2 3 25 25 H 1.09001 * 109.47218 * 294.54698 * 1 2 3 26 26 H 1.09000 * 109.47514 * 119.99925 * 2 1 3 27 27 H 1.09006 * 109.47490 * 239.99862 * 2 1 3 28 28 H 0.97001 * 119.99923 * 180.02562 * 8 7 5 29 29 H 1.00907 * 110.99484 * 150.46458 * 13 3 2 30 30 H 1.09004 * 109.44162 * 34.73849 * 14 13 3 31 31 H 1.08994 * 109.46894 * 298.44946 * 15 14 13 32 32 H 1.09001 * 109.47075 * 58.45136 * 15 14 13 33 33 H 1.08994 * 109.55354 * 298.44428 * 16 15 14 34 34 H 1.09005 * 109.51253 * 178.25748 * 16 15 14 35 35 H 1.08997 * 113.14993 * 197.81559 * 18 17 16 36 36 H 1.09004 * 113.15379 * 327.30867 * 18 17 16 37 37 H 1.09004 * 113.15314 * 32.72282 * 20 17 16 38 38 H 1.08995 * 113.15247 * 162.21538 * 20 17 16 39 39 H 1.09001 * 109.51388 * 297.13146 * 21 17 16 40 40 H 1.09000 * 109.51417 * 176.97257 * 21 17 16 41 41 H 1.09002 * 109.47063 * 301.55092 * 22 14 13 42 42 H 1.09000 * 109.47649 * 61.54819 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4429 0.0447 5 6 1.4879 2.1705 1.1983 6 1 0.8718 3.0470 1.0612 7 6 1.7692 1.7178 2.4700 8 7 2.5190 0.6503 2.6370 9 14 1.0854 2.6207 3.9554 10 1 -0.3984 2.6208 3.8948 11 1 1.5294 1.9380 5.1972 12 1 1.5809 4.0205 3.9552 13 7 1.6002 2.1173 -1.2284 14 6 2.5373 1.8664 -2.3315 15 6 3.6817 2.8795 -2.2676 16 6 4.6794 2.5939 -3.3930 17 6 3.9545 2.6708 -4.7389 18 6 3.5952 4.1000 -5.1492 19 16 5.2752 4.3330 -5.7935 20 6 4.8968 2.5645 -5.9389 21 6 2.7688 1.7058 -4.8144 22 6 1.8023 2.0051 -3.6656 23 1 -0.3634 -1.0230 -0.0978 24 1 -0.3633 0.5961 -0.8371 25 1 -0.3634 0.4269 0.9348 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 2.7166 0.3316 3.5316 29 1 1.4801 3.1072 -1.0740 30 1 2.9406 0.8576 -2.2425 31 1 3.2818 3.8869 -2.3827 32 1 4.1869 2.7968 -1.3053 33 1 5.1006 1.5971 -3.2627 34 1 5.4790 3.3342 -3.3672 35 1 2.8294 4.1438 -5.9236 36 1 3.3683 4.7453 -4.3005 37 1 5.7592 1.9248 -5.7512 38 1 4.3830 2.3111 -6.8661 39 1 3.1281 0.6802 -4.7301 40 1 2.2541 1.8350 -5.7665 41 1 0.9710 1.3007 -3.6974 42 1 1.4213 3.0213 -3.7668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205238040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:42 Heat of formation + Delta-G solvation = -16.798471 kcal Electronic energy + Delta-G solvation = -19567.269327 eV Core-core repulsion = 16865.278604 eV Total energy + Delta-G solvation = -2701.990724 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71166 -38.01732 -35.38336 -33.32305 -31.83011 -31.36283 -28.35085 -27.37971 -26.14726 -24.93887 -23.70158 -22.00623 -20.67226 -19.65018 -18.21475 -17.42417 -16.83560 -16.42718 -16.09391 -15.68616 -15.18442 -15.12564 -14.71996 -14.48489 -14.08872 -13.84667 -13.70742 -13.47106 -13.21906 -12.92317 -12.80488 -12.73698 -12.55787 -12.39225 -12.29468 -12.08251 -11.91509 -11.62077 -11.48009 -11.32918 -11.18348 -10.98593 -10.74306 -10.64957 -10.48096 -8.86114 -8.71644 -8.06490 -6.17582 0.93071 1.02027 1.43022 1.44059 1.50897 2.44326 3.21534 3.24424 3.61772 3.73484 3.88193 4.05651 4.25495 4.30906 4.39793 4.48401 4.56963 4.60347 4.62482 4.68928 4.69845 4.84764 4.90485 4.93493 5.03813 5.06509 5.08716 5.22284 5.26357 5.33488 5.36515 5.46939 5.54851 5.58908 5.68148 5.75808 5.88811 5.98055 6.33057 6.59582 6.90613 7.12686 7.51240 8.98288 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.004472 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.709739 B = 6259.562185 C = 6674.407948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C 0.226 3.774 4 H -0.036 1.036 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.090 3.910 15 C -0.135 4.135 16 C -0.089 4.089 17 C -0.053 4.053 18 C -0.055 4.055 19 S -0.371 6.371 20 C -0.053 4.053 21 C -0.090 4.090 22 C -0.094 4.094 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.020 0.980 28 H 0.259 0.741 29 H 0.329 0.671 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 2.366 -17.040 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.117 3.883 4 H -0.019 1.019 5 C -0.560 4.560 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.306 5.306 14 C -0.021 4.021 15 C -0.174 4.174 16 C -0.127 4.127 17 C -0.055 4.055 18 C -0.203 4.203 19 S -0.145 6.145 20 C -0.201 4.201 21 C -0.130 4.130 22 C -0.133 4.133 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.146 0.854 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.146 0.854 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.783 2.767 -17.328 17.638 hybrid contribution 0.081 0.262 1.847 1.867 sum 1.864 3.029 -15.481 15.884 Atomic orbital electron populations 1.21287 0.96069 0.98331 1.00602 1.21303 0.96246 0.97922 0.98119 1.18831 0.90935 0.92007 0.86506 1.01883 1.21452 1.31180 1.11864 0.91501 0.92666 1.25579 0.95471 0.95701 1.01365 1.70017 1.38727 1.24429 1.22472 0.85751 0.78953 0.78729 0.79023 1.19710 1.21352 1.19950 1.60725 1.48002 1.15372 1.06496 1.21585 0.90819 0.97216 0.92443 1.22117 0.97689 0.99970 0.97624 1.21352 0.97235 1.02256 0.91849 1.21567 0.95765 0.94086 0.94037 1.24537 0.93524 0.98707 1.03512 1.89207 1.23970 1.16375 1.84963 1.24503 1.02035 0.91475 1.02071 1.21523 0.93839 0.98499 0.99171 1.21387 0.97729 1.02136 0.92004 0.94894 0.92490 0.95316 0.92941 0.96111 0.93198 0.85385 0.93172 0.91864 0.94901 0.91482 0.91220 0.85753 0.89302 0.88233 0.85428 0.90873 0.88788 0.91677 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.60 9.45 71.98 0.68 -3.92 16 2 C -0.10 -4.65 5.55 30.59 0.17 -4.48 16 3 C 0.23 11.01 2.11 44.17 0.09 11.10 16 4 H -0.04 -2.01 7.12 -2.39 -0.02 -2.03 16 5 C -0.52 -27.68 7.31 25.60 0.19 -27.49 16 6 H 0.06 2.89 7.61 -2.91 -0.02 2.87 16 7 C 0.02 0.97 5.30 84.66 0.45 1.42 16 8 N -0.92 -52.43 11.34 21.45 0.24 -52.18 16 9 Si 0.95 43.28 29.54 68.60 2.03 45.30 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 N -0.68 -26.52 5.30 -473.45 -2.51 -29.03 16 14 C 0.09 2.84 2.23 44.89 0.10 2.94 16 15 C -0.13 -4.04 5.04 30.61 0.15 -3.89 16 16 C -0.09 -2.13 5.01 30.65 0.15 -1.98 16 17 C -0.05 -0.97 0.70 -52.17 -0.04 -1.00 16 18 C -0.05 -1.01 6.57 71.97 0.47 -0.53 16 19 S -0.37 -8.31 23.72 -56.49 -1.34 -9.65 16 20 C -0.05 -0.85 7.07 71.96 0.51 -0.34 16 21 C -0.09 -1.53 5.09 30.64 0.16 -1.38 16 22 C -0.09 -2.21 5.42 30.61 0.17 -2.04 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 2.34 7.52 -2.39 -0.02 2.32 16 25 H 0.03 1.35 7.36 -2.39 -0.02 1.33 16 26 H 0.05 2.85 6.14 -2.39 -0.01 2.84 16 27 H 0.02 0.91 7.45 -2.38 -0.02 0.89 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.33 12.88 7.96 -89.69 -0.71 12.17 16 30 H 0.05 1.79 7.14 -2.39 -0.02 1.77 16 31 H 0.06 1.81 7.11 -2.39 -0.02 1.79 16 32 H 0.03 1.20 7.43 -2.39 -0.02 1.19 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.77 7.17 -2.38 -0.02 1.75 16 35 H 0.12 1.75 8.11 -2.39 -0.02 1.73 16 36 H 0.09 1.81 7.07 -2.38 -0.02 1.79 16 37 H 0.10 1.55 8.12 -2.39 -0.02 1.53 16 38 H 0.13 1.47 8.12 -2.39 -0.02 1.45 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.14 8.13 -2.39 -0.02 1.12 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 1.45 7.87 -2.39 -0.02 1.43 16 Total: -1.00 -59.22 326.37 1.94 -57.27 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.27 Total: 19.88 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 3.25 Total: -31.60 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -2.27 Total: -81.21 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.34 Total: -9.65 kcal Total: -59.22 1.94 -57.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205238040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.473 kcal (2) G-P(sol) polarization free energy of solvation -59.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds