Wall clock time and date at job start Mon Mar 30 2020 01:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47411 * 2 1 4 4 C 1.53004 * 109.47321 * 240.00220 * 2 1 3 5 5 N 1.46502 * 109.46908 * 64.99852 * 4 2 1 6 6 C 1.46502 * 119.99822 * 269.99964 * 5 4 2 7 7 C 1.36932 * 120.00459 * 90.00485 * 5 4 2 8 8 H 1.08001 * 119.99617 * 20.50447 * 7 5 4 9 9 C 1.38809 * 120.00335 * 200.51422 * 7 5 4 10 10 N 1.31619 * 120.00093 * 15.02083 * 9 7 5 11 11 Si 1.86797 * 119.99978 * 195.02436 * 9 7 5 12 12 H 1.48503 * 109.47374 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47255 * 119.99603 * 11 9 7 14 14 H 1.48499 * 109.47182 * 239.99516 * 11 9 7 15 15 C 1.50703 * 109.47511 * 119.99974 * 2 1 3 16 16 C 1.36130 * 120.16809 * 56.18061 * 15 2 1 17 17 C 1.39329 * 120.98458 * 180.02562 * 16 15 2 18 18 C 1.36130 * 120.99173 * 359.97438 * 17 16 15 19 19 C 1.40491 * 119.65042 * 0.02562 * 18 17 16 20 20 C 1.40557 * 121.28984 * 179.97438 * 19 18 17 21 21 C 1.36078 * 119.65680 * 180.02562 * 20 19 18 22 22 C 1.39382 * 120.99405 * 0.02562 * 21 20 19 23 23 C 1.36087 * 120.99558 * 359.95071 * 22 21 20 24 24 C 1.40490 * 120.17404 * 236.19994 * 15 2 1 25 25 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46869 * 299.99724 * 1 2 3 27 27 H 1.08999 * 109.47205 * 59.99493 * 1 2 3 28 28 H 1.08995 * 109.47100 * 184.99772 * 4 2 1 29 29 H 1.08998 * 109.46943 * 305.00421 * 4 2 1 30 30 H 1.09001 * 109.46910 * 95.16587 * 6 5 4 31 31 H 1.08997 * 109.47570 * 215.16298 * 6 5 4 32 32 H 1.09000 * 109.47304 * 335.16788 * 6 5 4 33 33 H 0.97003 * 120.00243 * 180.02562 * 10 9 7 34 34 H 1.07999 * 119.50454 * 0.04080 * 16 15 2 35 35 H 1.08006 * 119.50246 * 179.97438 * 17 16 15 36 36 H 1.07994 * 120.16993 * 179.72843 * 18 17 16 37 37 H 1.08001 * 120.16622 * 0.02562 * 20 19 18 38 38 H 1.07998 * 119.50461 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.50090 * 179.97438 * 22 21 20 40 40 H 1.07993 * 120.17615 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 0.3746 -0.2423 -3.1028 7 6 2.4845 1.0022 -2.9404 8 1 3.5342 0.9945 -2.6863 9 6 1.9790 1.9923 -3.7716 10 7 0.6795 2.1869 -3.8485 11 14 3.1429 3.0484 -4.7813 12 1 4.5438 2.6326 -4.5171 13 1 2.8394 2.8783 -6.2249 14 1 2.9707 4.4743 -4.4040 15 6 2.0324 -0.7104 1.2305 16 6 1.6429 -1.9889 1.4893 17 6 2.0966 -2.6615 2.6220 18 6 2.9428 -2.0601 3.5024 19 6 3.3666 -0.7411 3.2687 20 6 4.2393 -0.0869 4.1552 21 6 4.6282 1.1913 3.8967 22 6 4.1736 1.8646 2.7641 23 6 3.3284 1.2632 1.8833 24 6 2.9048 -0.0566 2.1166 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.1263 -0.7994 -1.2056 29 1 1.6054 -1.7197 -1.2953 30 1 -0.3816 0.4527 -2.7378 31 1 0.4886 -0.1221 -4.1801 32 1 0.0658 -1.2640 -2.8818 33 1 0.3262 2.8786 -4.4296 34 1 0.9725 -2.4892 0.8062 35 1 1.7719 -3.6754 2.8041 36 1 3.2827 -2.5923 4.3785 37 1 4.5994 -0.5960 5.0370 38 1 5.2985 1.6918 4.5797 39 1 4.4973 2.8789 2.5827 40 1 2.9847 1.7971 1.0098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208714327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:24 Heat of formation + Delta-G solvation = 59.091165 kcal Electronic energy + Delta-G solvation = -20298.232337 eV Core-core repulsion = 17464.088484 eV Total energy + Delta-G solvation = -2834.143853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31616 -37.04762 -35.82650 -33.87783 -31.53122 -30.22419 -30.07538 -28.16192 -26.56574 -25.38997 -23.46209 -22.86219 -22.41076 -20.90874 -19.11714 -17.18473 -16.85485 -16.62306 -15.93893 -14.84379 -14.41962 -14.30844 -13.70731 -13.64900 -13.52568 -13.23895 -13.04989 -12.75075 -12.45439 -12.17382 -11.75330 -11.61011 -11.21366 -11.09579 -10.94025 -10.83893 -10.69322 -10.59158 -10.48158 -10.09656 -10.00985 -9.79660 -9.60894 -9.50165 -8.52054 -8.39078 -7.57750 -6.73797 -5.72088 -3.13873 0.77665 1.23799 2.29484 3.22816 3.38298 3.46210 3.48090 4.35066 4.51409 4.78402 4.97614 5.05905 5.18559 5.26427 5.35129 5.43861 5.56725 5.60052 5.65558 5.70125 5.86087 5.96597 5.99276 6.17987 6.24398 6.32922 6.43962 6.46539 6.48843 6.60793 6.66133 6.74195 6.77193 6.77943 6.88875 7.00346 7.08896 7.22427 7.27609 7.39191 7.75671 7.83845 8.40180 9.25000 9.89118 10.37534 11.33021 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.005579 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.179536 B = 5017.711074 C = 5958.571897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.084 0.916 4 C 0.164 3.836 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.251 4.251 8 H 0.069 0.931 9 C 0.001 3.999 10 N -0.906 5.906 11 Si 0.901 3.099 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 C -0.037 4.037 16 C -0.131 4.131 17 C -0.104 4.104 18 C -0.132 4.132 19 C -0.047 4.047 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.092 4.092 24 C -0.051 4.051 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.033 0.967 31 H 0.041 0.959 32 H -0.003 1.003 33 H 0.251 0.749 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -6.187 14.281 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 H 0.102 0.898 4 C 0.036 3.964 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.380 4.380 8 H 0.087 0.913 9 C -0.197 4.197 10 N -0.552 5.552 11 Si 0.731 3.269 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 C -0.037 4.037 16 C -0.149 4.149 17 C -0.122 4.122 18 C -0.150 4.150 19 C -0.047 4.047 20 C -0.137 4.137 21 C -0.134 4.134 22 C -0.149 4.149 23 C -0.109 4.109 24 C -0.051 4.051 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.016 0.984 33 H 0.061 0.939 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.124 -6.075 14.122 15.687 hybrid contribution 0.563 0.719 -0.450 1.018 sum 3.687 -5.356 13.671 15.139 Atomic orbital electron populations 1.21825 0.94580 1.00714 1.02085 1.21116 0.96327 1.00841 0.92246 0.89803 1.20890 0.97500 0.93056 0.84927 1.44013 1.20389 1.41297 1.26191 1.20867 0.87253 0.93216 0.96915 1.19266 0.90286 1.03498 1.24988 0.91328 1.24941 0.95710 0.97436 1.01631 1.70083 1.10478 1.34047 1.40568 0.86240 0.80397 0.80054 0.80222 1.20360 1.21655 1.21819 1.20119 0.94213 0.94264 0.95150 1.20674 1.01550 0.94871 0.97780 1.20803 0.97282 0.99546 0.94617 1.20846 0.99881 0.94195 1.00104 1.18070 0.97616 0.94324 0.94736 1.20926 0.98409 0.95305 0.99049 1.20800 1.00009 0.95018 0.97534 1.20829 0.98807 1.00238 0.95056 1.21355 0.96305 0.93995 0.99269 1.18062 0.98065 0.94391 0.94612 0.93865 0.94392 0.90212 0.93901 0.94320 0.94869 0.94068 0.98430 0.93857 0.86096 0.86512 0.86286 0.86157 0.86505 0.86222 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.53 37.16 0.32 -2.14 16 2 C -0.08 -1.58 2.64 -91.77 -0.24 -1.83 16 3 H 0.08 1.75 5.58 -51.93 -0.29 1.46 16 4 C 0.16 3.39 4.97 -4.04 -0.02 3.37 16 5 N -0.60 -14.75 2.75 -181.12 -0.50 -15.25 16 6 C 0.16 3.92 7.88 59.85 0.47 4.39 16 7 C -0.25 -6.80 9.67 -15.06 -0.15 -6.95 16 8 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 9 C 0.00 0.02 5.06 -17.43 -0.09 -0.06 16 10 N -0.91 -26.00 10.68 55.49 0.59 -25.40 16 11 Si 0.90 21.78 29.58 -169.99 -5.03 16.75 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 C -0.04 -0.61 4.80 -104.53 -0.50 -1.11 16 16 C -0.13 -1.94 8.71 -39.93 -0.35 -2.29 16 17 C -0.10 -1.35 9.95 -39.93 -0.40 -1.75 16 18 C -0.13 -1.71 9.77 -39.49 -0.39 -2.09 16 19 C -0.05 -0.70 5.74 -106.83 -0.61 -1.31 16 20 C -0.12 -1.50 9.77 -39.48 -0.39 -1.89 16 21 C -0.12 -1.43 9.95 -39.93 -0.40 -1.82 16 22 C -0.13 -1.81 9.95 -39.93 -0.40 -2.21 16 23 C -0.09 -1.47 9.37 -39.48 -0.37 -1.84 16 24 C -0.05 -0.84 5.74 -106.83 -0.61 -1.46 16 25 H 0.04 0.71 7.16 -51.93 -0.37 0.33 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.68 5.54 -51.93 -0.29 1.39 16 28 H 0.04 0.91 8.03 -51.93 -0.42 0.49 16 29 H 0.04 0.74 7.48 -51.93 -0.39 0.35 16 30 H 0.03 0.85 5.90 -51.93 -0.31 0.55 16 31 H 0.04 1.08 7.23 -51.93 -0.38 0.70 16 32 H 0.00 -0.06 7.83 -51.93 -0.41 -0.47 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.12 1.68 7.07 -52.49 -0.37 1.31 16 35 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.14 2.30 5.95 -52.49 -0.31 1.99 16 LS Contribution 319.21 15.07 4.81 4.81 Total: -1.00 -29.34 319.21 -9.85 -39.20 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.61 Total: 0.89 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -4.12 Total: -20.99 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.09 Total: -40.65 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.34 -9.85 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208714327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.288 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds