Wall clock time and date at job start Mon Mar 30 2020 01:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47411 * 2 1 4 4 C 1.53004 * 109.47321 * 240.00220 * 2 1 3 5 5 N 1.46502 * 109.46908 * 64.99852 * 4 2 1 6 6 C 1.46502 * 119.99822 * 269.99964 * 5 4 2 7 7 C 1.36932 * 120.00459 * 90.00485 * 5 4 2 8 8 H 1.08001 * 119.99617 * 20.50447 * 7 5 4 9 9 C 1.38809 * 120.00335 * 200.51422 * 7 5 4 10 10 N 1.31619 * 120.00093 * 15.02083 * 9 7 5 11 11 Si 1.86797 * 119.99978 * 195.02436 * 9 7 5 12 12 H 1.48503 * 109.47374 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47255 * 119.99603 * 11 9 7 14 14 H 1.48499 * 109.47182 * 239.99516 * 11 9 7 15 15 C 1.50703 * 109.47511 * 119.99974 * 2 1 3 16 16 C 1.36130 * 120.16809 * 56.18061 * 15 2 1 17 17 C 1.39329 * 120.98458 * 180.02562 * 16 15 2 18 18 C 1.36130 * 120.99173 * 359.97438 * 17 16 15 19 19 C 1.40491 * 119.65042 * 0.02562 * 18 17 16 20 20 C 1.40557 * 121.28984 * 179.97438 * 19 18 17 21 21 C 1.36078 * 119.65680 * 180.02562 * 20 19 18 22 22 C 1.39382 * 120.99405 * 0.02562 * 21 20 19 23 23 C 1.36087 * 120.99558 * 359.95071 * 22 21 20 24 24 C 1.40490 * 120.17404 * 236.19994 * 15 2 1 25 25 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46869 * 299.99724 * 1 2 3 27 27 H 1.08999 * 109.47205 * 59.99493 * 1 2 3 28 28 H 1.08995 * 109.47100 * 184.99772 * 4 2 1 29 29 H 1.08998 * 109.46943 * 305.00421 * 4 2 1 30 30 H 1.09001 * 109.46910 * 95.16587 * 6 5 4 31 31 H 1.08997 * 109.47570 * 215.16298 * 6 5 4 32 32 H 1.09000 * 109.47304 * 335.16788 * 6 5 4 33 33 H 0.97003 * 120.00243 * 180.02562 * 10 9 7 34 34 H 1.07999 * 119.50454 * 0.04080 * 16 15 2 35 35 H 1.08006 * 119.50246 * 179.97438 * 17 16 15 36 36 H 1.07994 * 120.16993 * 179.72843 * 18 17 16 37 37 H 1.08001 * 120.16622 * 0.02562 * 20 19 18 38 38 H 1.07998 * 119.50461 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.50090 * 179.97438 * 22 21 20 40 40 H 1.07993 * 120.17615 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 0.3746 -0.2423 -3.1028 7 6 2.4845 1.0022 -2.9404 8 1 3.5342 0.9945 -2.6863 9 6 1.9790 1.9923 -3.7716 10 7 0.6795 2.1869 -3.8485 11 14 3.1429 3.0484 -4.7813 12 1 4.5438 2.6326 -4.5171 13 1 2.8394 2.8783 -6.2249 14 1 2.9707 4.4743 -4.4040 15 6 2.0324 -0.7104 1.2305 16 6 1.6429 -1.9889 1.4893 17 6 2.0966 -2.6615 2.6220 18 6 2.9428 -2.0601 3.5024 19 6 3.3666 -0.7411 3.2687 20 6 4.2393 -0.0869 4.1552 21 6 4.6282 1.1913 3.8967 22 6 4.1736 1.8646 2.7641 23 6 3.3284 1.2632 1.8833 24 6 2.9048 -0.0566 2.1166 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.1263 -0.7994 -1.2056 29 1 1.6054 -1.7197 -1.2953 30 1 -0.3816 0.4527 -2.7378 31 1 0.4886 -0.1221 -4.1801 32 1 0.0658 -1.2640 -2.8818 33 1 0.3262 2.8786 -4.4296 34 1 0.9725 -2.4892 0.8062 35 1 1.7719 -3.6754 2.8041 36 1 3.2827 -2.5923 4.3785 37 1 4.5994 -0.5960 5.0370 38 1 5.2985 1.6918 4.5797 39 1 4.4973 2.8789 2.5827 40 1 2.9847 1.7971 1.0098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208714327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:23 Heat of formation + Delta-G solvation = 45.719033 kcal Electronic energy + Delta-G solvation = -20298.812197 eV Core-core repulsion = 17464.088484 eV Total energy + Delta-G solvation = -2834.723712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.42721 -38.51355 -37.17847 -35.40997 -33.18195 -31.77450 -31.13306 -29.35541 -28.40382 -27.35392 -24.70631 -23.96913 -23.73115 -22.60074 -20.46825 -18.69212 -18.24808 -17.99275 -17.01124 -16.76681 -15.83656 -15.69935 -15.41865 -14.99823 -14.83700 -14.46032 -14.31838 -14.15563 -13.76058 -13.60966 -13.47408 -12.90014 -12.81362 -12.73014 -12.62581 -12.33721 -12.26140 -12.02376 -11.97919 -11.91821 -11.76244 -11.40186 -11.15080 -10.69892 -10.58933 -9.45801 -8.85602 -8.58716 -7.82673 -5.26895 -0.29732 0.16671 1.19660 1.43704 1.45545 1.55476 2.17920 2.50687 3.24088 3.31645 3.56795 3.86595 3.90730 4.06611 4.12747 4.21557 4.33011 4.40149 4.43400 4.52252 4.55906 4.61073 4.70119 4.82467 4.86454 4.96244 5.03306 5.11913 5.20119 5.24528 5.33349 5.36169 5.41649 5.45978 5.48385 5.62246 5.66450 5.70367 5.80657 5.88085 6.05520 6.20866 6.33115 7.16235 7.88818 8.31647 9.20820 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.005579 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.179536 B = 5017.711074 C = 5958.571897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 H 0.052 0.948 4 C 0.167 3.833 5 N -0.612 5.612 6 C 0.178 3.822 7 C -0.258 4.258 8 H 0.064 0.936 9 C -0.050 4.050 10 N -0.935 5.935 11 Si 0.962 3.038 12 H -0.270 1.270 13 H -0.290 1.290 14 H -0.292 1.292 15 C -0.066 4.066 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.069 4.069 20 C -0.111 4.111 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.071 4.071 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.059 0.941 30 H 0.013 0.987 31 H 0.012 0.988 32 H 0.029 0.971 33 H 0.247 0.753 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.133 0.867 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 -7.966 17.006 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 H 0.070 0.930 4 C 0.040 3.960 5 N -0.335 5.335 6 C 0.033 3.967 7 C -0.388 4.388 8 H 0.082 0.918 9 C -0.245 4.245 10 N -0.582 5.582 11 Si 0.790 3.210 12 H -0.195 1.195 13 H -0.217 1.217 14 H -0.220 1.220 15 C -0.067 4.067 16 C -0.143 4.143 17 C -0.130 4.130 18 C -0.137 4.137 19 C -0.069 4.069 20 C -0.128 4.128 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.071 4.071 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.147 0.853 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.175 0.825 38 H 0.169 0.831 39 H 0.151 0.849 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.463 -7.875 16.877 19.152 hybrid contribution 0.207 1.204 -1.139 1.671 sum 4.670 -6.671 15.738 17.720 Atomic orbital electron populations 1.21702 0.94300 1.01569 1.00663 1.20733 0.96390 0.99112 0.92827 0.92996 1.20938 0.96980 0.93574 0.84477 1.44180 1.20213 1.41144 1.27932 1.20618 0.86724 0.94400 0.94958 1.19485 0.90539 1.03895 1.24909 0.91806 1.25632 0.97096 0.98880 1.02913 1.70234 1.11880 1.34732 1.41316 0.85283 0.78982 0.78222 0.78472 1.19469 1.21655 1.21957 1.19877 0.96423 0.95349 0.95077 1.20890 1.00892 0.93972 0.98564 1.21140 0.97175 1.00963 0.93685 1.21301 0.98358 0.93289 1.00749 1.18427 0.98471 0.95433 0.94534 1.21372 0.96806 0.95300 0.99346 1.21167 1.00237 0.95256 0.97240 1.21118 0.97453 1.00905 0.94981 1.21275 0.98825 0.94793 0.99824 1.18243 0.98491 0.94633 0.95701 0.91741 0.93787 0.93512 0.94962 0.92313 0.96891 0.96899 0.95260 0.94346 0.85337 0.83149 0.82661 0.82536 0.83117 0.84882 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.53 71.98 0.61 -4.07 16 2 C -0.07 -2.73 2.64 -11.54 -0.03 -2.76 16 3 H 0.05 2.35 5.58 -2.39 -0.01 2.34 16 4 C 0.17 7.04 4.97 86.38 0.43 7.47 16 5 N -0.61 -31.23 2.75 -726.94 -2.00 -33.23 16 6 C 0.18 8.85 7.88 127.77 1.01 9.86 16 7 C -0.26 -14.50 9.67 84.03 0.81 -13.69 16 8 H 0.06 3.57 7.86 -2.91 -0.02 3.55 16 9 C -0.05 -2.85 5.06 84.86 0.43 -2.42 16 10 N -0.93 -55.73 10.68 21.65 0.23 -55.50 16 11 Si 0.96 46.04 29.58 68.60 2.03 48.07 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 14 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 15 C -0.07 -2.23 4.80 -19.81 -0.10 -2.33 16 16 C -0.13 -3.48 8.71 22.04 0.19 -3.29 16 17 C -0.11 -2.49 9.95 22.04 0.22 -2.27 16 18 C -0.12 -2.60 9.77 22.33 0.22 -2.38 16 19 C -0.07 -1.84 5.74 -21.30 -0.12 -1.96 16 20 C -0.11 -2.39 9.77 22.33 0.22 -2.17 16 21 C -0.12 -2.65 9.95 22.04 0.22 -2.43 16 22 C -0.13 -3.43 9.95 22.04 0.22 -3.21 16 23 C -0.13 -4.34 9.37 22.33 0.21 -4.13 16 24 C -0.07 -2.33 5.74 -21.30 -0.12 -2.45 16 25 H 0.06 2.08 7.16 -2.39 -0.02 2.06 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 2.05 5.54 -2.39 -0.01 2.04 16 28 H 0.03 1.41 8.03 -2.39 -0.02 1.39 16 29 H 0.06 2.21 7.48 -2.39 -0.02 2.20 16 30 H 0.01 0.70 5.90 -2.39 -0.01 0.68 16 31 H 0.01 0.68 7.23 -2.39 -0.02 0.66 16 32 H 0.03 1.23 7.83 -2.39 -0.02 1.21 16 33 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.13 3.28 7.07 -2.91 -0.02 3.26 16 35 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.11 4.12 5.95 -2.91 -0.02 4.10 16 Total: -1.00 -66.11 319.21 5.70 -60.41 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 1.02 Total: 12.48 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 4.42 Total: -32.23 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -1.77 Total: -88.73 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -66.11 5.70 -60.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208714327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.125 kcal (2) G-P(sol) polarization free energy of solvation -66.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds