Wall clock time and date at job start Mon Mar 30 2020 01:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47144 * 2 1 4 4 C 1.53001 * 109.47392 * 120.00600 * 2 1 3 5 5 N 1.46499 * 109.46621 * 294.99781 * 4 2 1 6 6 C 1.46499 * 120.00429 * 90.00350 * 5 4 2 7 7 C 1.36937 * 119.99943 * 269.71981 * 5 4 2 8 8 H 1.08001 * 120.00318 * 19.13124 * 7 5 4 9 9 C 1.38817 * 120.00136 * 199.12893 * 7 5 4 10 10 N 1.31612 * 120.00067 * 4.18407 * 9 7 5 11 11 Si 1.86799 * 119.99946 * 184.18818 * 9 7 5 12 12 H 1.48504 * 109.47339 * 60.00062 * 11 9 7 13 13 H 1.48501 * 109.47260 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47212 * 300.00142 * 11 9 7 15 15 C 1.50701 * 109.46626 * 240.00446 * 2 1 3 16 16 C 1.36132 * 120.17341 * 305.49783 * 15 2 1 17 17 C 1.39334 * 120.98432 * 179.67129 * 16 15 2 18 18 C 1.36126 * 120.99075 * 0.63936 * 17 16 15 19 19 C 1.40493 * 119.65531 * 359.67779 * 18 17 16 20 20 C 1.40544 * 121.28652 * 180.02562 * 19 18 17 21 21 C 1.36089 * 119.65281 * 180.02562 * 20 19 18 22 22 C 1.39379 * 120.99171 * 359.97438 * 21 20 19 23 23 C 1.36084 * 120.99710 * 359.97438 * 22 21 20 24 24 C 1.40507 * 120.17099 * 125.78156 * 15 2 1 25 25 H 1.08993 * 109.47283 * 59.99227 * 1 2 3 26 26 H 1.08991 * 109.47241 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46761 * 299.99960 * 1 2 3 28 28 H 1.08998 * 109.47087 * 174.99691 * 4 2 1 29 29 H 1.08995 * 109.47266 * 54.99464 * 4 2 1 30 30 H 1.08998 * 109.47330 * 95.65050 * 6 5 4 31 31 H 1.08999 * 109.47473 * 215.65646 * 6 5 4 32 32 H 1.09004 * 109.46733 * 335.65266 * 6 5 4 33 33 H 0.97001 * 120.00092 * 179.97438 * 10 9 7 34 34 H 1.07993 * 119.49822 * 0.02562 * 16 15 2 35 35 H 1.08000 * 119.49951 * 180.31802 * 17 16 15 36 36 H 1.07998 * 120.17255 * 179.69893 * 18 17 16 37 37 H 1.07996 * 120.17301 * 0.04861 * 20 19 18 38 38 H 1.08007 * 119.50336 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.50027 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.17469 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 1.6526 0.0352 2.4423 6 6 0.3747 -0.2425 3.1028 7 6 2.4873 0.9980 2.9436 8 1 3.2617 1.4195 2.3198 9 6 2.3383 1.4324 4.2536 10 7 1.4497 0.8618 5.0390 11 14 3.3989 2.8269 4.9016 12 1 3.1619 4.0476 4.0897 13 1 3.0478 3.0985 6.3187 14 1 4.8305 2.4429 4.8116 15 6 2.0322 -0.7103 -1.2306 16 6 1.6159 -1.9765 -1.5075 17 6 2.0642 -2.6465 -2.6440 18 6 2.9413 -2.0593 -3.5036 19 6 3.3983 -0.7557 -3.2475 20 6 4.3035 -0.1166 -4.1121 21 6 4.7248 1.1467 -3.8316 22 6 4.2718 1.8193 -2.6980 23 6 3.3945 1.2326 -1.8389 24 6 2.9372 -0.0714 -2.0949 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1264 -0.7996 1.2054 29 1 1.6055 -1.7199 1.2951 30 1 0.5351 -0.9379 3.9266 31 1 -0.0446 0.6869 3.4883 32 1 -0.3171 -0.6830 2.3849 33 1 1.3458 1.1651 5.9545 34 1 0.9236 -2.4667 -0.8393 35 1 1.7144 -3.6487 -2.8431 36 1 3.2838 -2.5926 -4.3780 37 1 4.6624 -0.6252 -4.9946 38 1 5.4207 1.6354 -4.4975 39 1 4.6223 2.8212 -2.4985 40 1 3.0518 1.7662 -0.9646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208714328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:26 Heat of formation + Delta-G solvation = 61.872328 kcal Electronic energy + Delta-G solvation = -20228.095573 eV Core-core repulsion = 17394.072320 eV Total energy + Delta-G solvation = -2834.023253 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37081 -37.10367 -35.86116 -33.92460 -31.58447 -30.19955 -30.11446 -28.20705 -26.59663 -25.39854 -23.50215 -22.91366 -22.43339 -20.88476 -19.20047 -17.23665 -16.91952 -16.58630 -15.98672 -14.97062 -14.45622 -14.25775 -13.71313 -13.67767 -13.57089 -13.25807 -13.07228 -12.76383 -12.54589 -12.21568 -11.78186 -11.53280 -11.37030 -11.12803 -10.96744 -10.89544 -10.75160 -10.57605 -10.48598 -10.11832 -9.86278 -9.80825 -9.73846 -9.57396 -8.49771 -8.43584 -7.63228 -6.72243 -5.66390 -3.11091 0.72735 1.19235 2.24513 3.18173 3.40470 3.45475 3.46085 4.30001 4.51513 4.73524 4.92734 5.01474 5.13286 5.21801 5.30319 5.45538 5.52081 5.55328 5.61435 5.65072 5.82166 5.88810 5.91218 6.12339 6.17088 6.26720 6.41395 6.41446 6.43237 6.52723 6.59398 6.67810 6.73572 6.76753 6.90089 6.92595 6.99398 7.14777 7.22240 7.55087 7.76528 7.90475 8.43542 9.29809 9.92515 10.39465 11.36896 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021039 B = 0.005432 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.558890 B = 5153.777602 C = 6149.387793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.081 0.919 4 C 0.164 3.836 5 N -0.602 5.602 6 C 0.164 3.836 7 C -0.249 4.249 8 H 0.069 0.931 9 C -0.001 4.001 10 N -0.914 5.914 11 Si 0.905 3.095 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.284 1.284 15 C -0.038 4.038 16 C -0.128 4.128 17 C -0.105 4.105 18 C -0.130 4.130 19 C -0.048 4.048 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.130 4.130 23 C -0.093 4.093 24 C -0.050 4.050 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.021 0.979 31 H 0.054 0.946 32 H -0.003 1.003 33 H 0.251 0.749 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 -3.422 -17.005 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.099 0.901 4 C 0.036 3.964 5 N -0.324 5.324 6 C 0.020 3.980 7 C -0.378 4.378 8 H 0.086 0.914 9 C -0.198 4.198 10 N -0.561 5.561 11 Si 0.736 3.264 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.211 1.211 15 C -0.039 4.039 16 C -0.146 4.146 17 C -0.123 4.123 18 C -0.148 4.148 19 C -0.048 4.048 20 C -0.135 4.135 21 C -0.134 4.134 22 C -0.148 4.148 23 C -0.111 4.111 24 C -0.050 4.050 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.016 0.984 33 H 0.062 0.938 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.659 -3.379 -16.765 17.183 hybrid contribution 0.640 0.746 0.380 1.054 sum 2.299 -2.633 -16.385 16.754 Atomic orbital electron populations 1.21823 0.94700 1.01006 1.01550 1.21096 0.96211 1.00593 0.92706 0.90079 1.20714 0.97563 0.92644 0.85452 1.43937 1.18744 1.41518 1.28174 1.20962 0.84566 0.99899 0.92613 1.19204 1.11419 1.13040 0.94168 0.91362 1.24985 0.99042 0.99828 0.95967 1.70094 1.36491 1.42862 1.06632 0.86317 0.80186 0.82036 0.77893 1.21133 1.21628 1.21057 1.20026 0.94305 0.94340 0.95188 1.20695 1.01426 0.94879 0.97588 1.20813 0.97232 0.99598 0.94633 1.20863 0.99349 0.94392 1.00210 1.18066 0.97451 0.94477 0.94798 1.20937 0.97971 0.95462 0.99141 1.20806 1.00018 0.95123 0.97481 1.20827 0.98551 1.00262 0.95144 1.21309 0.96384 0.94148 0.99277 1.18045 0.97783 0.94524 0.94685 0.94208 0.93469 0.90922 0.93677 0.94430 0.96022 0.92750 0.98437 0.93814 0.86002 0.86426 0.86218 0.86098 0.86457 0.86213 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 7.92 37.16 0.29 -1.95 16 2 C -0.08 -1.52 2.63 -91.77 -0.24 -1.76 16 3 H 0.08 1.55 5.60 -51.93 -0.29 1.26 16 4 C 0.16 3.41 4.94 -4.04 -0.02 3.39 16 5 N -0.60 -15.02 2.76 -181.12 -0.50 -15.52 16 6 C 0.16 4.04 7.84 59.85 0.47 4.51 16 7 C -0.25 -6.80 9.73 -15.06 -0.15 -6.95 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C 0.00 -0.03 5.29 -17.43 -0.09 -0.12 16 10 N -0.91 -26.67 10.05 55.49 0.56 -26.11 16 11 Si 0.91 21.98 29.56 -169.99 -5.02 16.95 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C -0.04 -0.61 4.80 -104.52 -0.50 -1.11 16 16 C -0.13 -1.85 8.75 -39.93 -0.35 -2.20 16 17 C -0.10 -1.32 9.95 -39.93 -0.40 -1.72 16 18 C -0.13 -1.63 9.77 -39.49 -0.39 -2.02 16 19 C -0.05 -0.68 5.74 -106.84 -0.61 -1.29 16 20 C -0.12 -1.43 9.77 -39.48 -0.39 -1.82 16 21 C -0.12 -1.38 9.95 -39.93 -0.40 -1.77 16 22 C -0.13 -1.70 9.95 -39.93 -0.40 -2.10 16 23 C -0.09 -1.43 9.36 -39.49 -0.37 -1.80 16 24 C -0.05 -0.80 5.74 -106.83 -0.61 -1.41 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.73 7.08 -51.93 -0.37 0.36 16 27 H 0.07 1.36 6.00 -51.93 -0.31 1.05 16 28 H 0.04 0.98 8.04 -51.93 -0.42 0.56 16 29 H 0.04 0.74 7.81 -51.93 -0.41 0.33 16 30 H 0.02 0.58 7.50 -51.93 -0.39 0.19 16 31 H 0.05 1.46 6.83 -51.93 -0.35 1.10 16 32 H 0.00 -0.06 6.24 -51.93 -0.32 -0.38 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.12 1.66 7.08 -52.49 -0.37 1.28 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.13 2.11 5.96 -52.49 -0.31 1.79 16 LS Contribution 318.51 15.07 4.80 4.80 Total: -1.00 -29.87 318.51 -9.94 -39.81 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.63 Total: 0.18 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -4.15 Total: -20.12 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.06 Total: -41.63 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.87 -9.94 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208714328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.684 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds