Wall clock time and date at job start Mon Mar 30 2020 01:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47144 * 2 1 4 4 C 1.53001 * 109.47392 * 120.00600 * 2 1 3 5 5 N 1.46499 * 109.46621 * 294.99781 * 4 2 1 6 6 C 1.46499 * 120.00429 * 90.00350 * 5 4 2 7 7 C 1.36937 * 119.99943 * 269.71981 * 5 4 2 8 8 H 1.08001 * 120.00318 * 19.13124 * 7 5 4 9 9 C 1.38817 * 120.00136 * 199.12893 * 7 5 4 10 10 N 1.31612 * 120.00067 * 4.18407 * 9 7 5 11 11 Si 1.86799 * 119.99946 * 184.18818 * 9 7 5 12 12 H 1.48504 * 109.47339 * 60.00062 * 11 9 7 13 13 H 1.48501 * 109.47260 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47212 * 300.00142 * 11 9 7 15 15 C 1.50701 * 109.46626 * 240.00446 * 2 1 3 16 16 C 1.36132 * 120.17341 * 305.49783 * 15 2 1 17 17 C 1.39334 * 120.98432 * 179.67129 * 16 15 2 18 18 C 1.36126 * 120.99075 * 0.63936 * 17 16 15 19 19 C 1.40493 * 119.65531 * 359.67779 * 18 17 16 20 20 C 1.40544 * 121.28652 * 180.02562 * 19 18 17 21 21 C 1.36089 * 119.65281 * 180.02562 * 20 19 18 22 22 C 1.39379 * 120.99171 * 359.97438 * 21 20 19 23 23 C 1.36084 * 120.99710 * 359.97438 * 22 21 20 24 24 C 1.40507 * 120.17099 * 125.78156 * 15 2 1 25 25 H 1.08993 * 109.47283 * 59.99227 * 1 2 3 26 26 H 1.08991 * 109.47241 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46761 * 299.99960 * 1 2 3 28 28 H 1.08998 * 109.47087 * 174.99691 * 4 2 1 29 29 H 1.08995 * 109.47266 * 54.99464 * 4 2 1 30 30 H 1.08998 * 109.47330 * 95.65050 * 6 5 4 31 31 H 1.08999 * 109.47473 * 215.65646 * 6 5 4 32 32 H 1.09004 * 109.46733 * 335.65266 * 6 5 4 33 33 H 0.97001 * 120.00092 * 179.97438 * 10 9 7 34 34 H 1.07993 * 119.49822 * 0.02562 * 16 15 2 35 35 H 1.08000 * 119.49951 * 180.31802 * 17 16 15 36 36 H 1.07998 * 120.17255 * 179.69893 * 18 17 16 37 37 H 1.07996 * 120.17301 * 0.04861 * 20 19 18 38 38 H 1.08007 * 119.50336 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.50027 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.17469 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 1.6526 0.0352 2.4423 6 6 0.3747 -0.2425 3.1028 7 6 2.4873 0.9980 2.9436 8 1 3.2617 1.4195 2.3198 9 6 2.3383 1.4324 4.2536 10 7 1.4497 0.8618 5.0390 11 14 3.3989 2.8269 4.9016 12 1 3.1619 4.0476 4.0897 13 1 3.0478 3.0985 6.3187 14 1 4.8305 2.4429 4.8116 15 6 2.0322 -0.7103 -1.2306 16 6 1.6159 -1.9765 -1.5075 17 6 2.0642 -2.6465 -2.6440 18 6 2.9413 -2.0593 -3.5036 19 6 3.3983 -0.7557 -3.2475 20 6 4.3035 -0.1166 -4.1121 21 6 4.7248 1.1467 -3.8316 22 6 4.2718 1.8193 -2.6980 23 6 3.3945 1.2326 -1.8389 24 6 2.9372 -0.0714 -2.0949 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1264 -0.7996 1.2054 29 1 1.6055 -1.7199 1.2951 30 1 0.5351 -0.9379 3.9266 31 1 -0.0446 0.6869 3.4883 32 1 -0.3171 -0.6830 2.3849 33 1 1.3458 1.1651 5.9545 34 1 0.9236 -2.4667 -0.8393 35 1 1.7144 -3.6487 -2.8431 36 1 3.2838 -2.5926 -4.3780 37 1 4.6624 -0.6252 -4.9946 38 1 5.4207 1.6354 -4.4975 39 1 4.6223 2.8212 -2.4985 40 1 3.0518 1.7662 -0.9646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208714328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:26 Heat of formation + Delta-G solvation = 48.136182 kcal Electronic energy + Delta-G solvation = -20228.691217 eV Core-core repulsion = 17394.072320 eV Total energy + Delta-G solvation = -2834.618897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.43564 -38.53595 -37.18777 -35.44792 -33.18332 -31.73340 -31.13601 -29.35282 -28.43642 -27.36151 -24.70034 -23.96974 -23.70527 -22.60408 -20.50760 -18.66836 -18.24903 -18.01860 -17.01617 -16.85775 -15.72870 -15.67510 -15.40209 -14.99797 -14.84432 -14.44141 -14.29524 -14.19612 -13.86191 -13.63751 -13.26620 -13.02484 -12.88434 -12.69829 -12.58400 -12.35524 -12.25835 -12.05096 -11.94666 -11.85626 -11.78413 -11.38845 -11.20891 -10.72748 -10.57401 -9.46004 -8.87463 -8.58116 -7.79242 -5.26239 -0.30163 0.16448 1.19222 1.44868 1.46929 1.53474 2.17544 2.50402 3.24083 3.33653 3.55622 3.87031 3.89557 4.06422 4.11588 4.20696 4.32057 4.39531 4.40898 4.51326 4.55601 4.60296 4.69992 4.83830 4.85355 4.99120 5.02800 5.10404 5.18907 5.22928 5.34703 5.37970 5.42557 5.49039 5.50040 5.61015 5.64529 5.70149 5.80336 5.86900 6.04345 6.20247 6.33521 7.17960 7.90135 8.31655 9.22232 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021039 B = 0.005432 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.558890 B = 5153.777602 C = 6149.387793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 H 0.060 0.940 4 C 0.168 3.832 5 N -0.617 5.617 6 C 0.182 3.818 7 C -0.256 4.256 8 H 0.068 0.932 9 C -0.056 4.056 10 N -0.943 5.943 11 Si 0.968 3.032 12 H -0.278 1.278 13 H -0.293 1.293 14 H -0.279 1.279 15 C -0.066 4.066 16 C -0.126 4.126 17 C -0.113 4.113 18 C -0.119 4.119 19 C -0.069 4.069 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.070 4.070 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.049 0.951 30 H -0.007 1.007 31 H 0.026 0.974 32 H 0.031 0.969 33 H 0.246 0.754 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 -4.225 -20.039 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.090 4.090 3 H 0.078 0.922 4 C 0.041 3.959 5 N -0.340 5.340 6 C 0.038 3.962 7 C -0.386 4.386 8 H 0.086 0.914 9 C -0.250 4.250 10 N -0.591 5.591 11 Si 0.796 3.204 12 H -0.204 1.204 13 H -0.219 1.219 14 H -0.205 1.205 15 C -0.067 4.067 16 C -0.144 4.144 17 C -0.131 4.131 18 C -0.137 4.137 19 C -0.069 4.069 20 C -0.129 4.129 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.070 4.070 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.012 0.988 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.145 0.855 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.153 0.847 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.728 -4.192 -19.846 20.467 hybrid contribution 0.360 0.944 1.160 1.538 sum 3.088 -3.248 -18.686 19.216 Atomic orbital electron populations 1.21738 0.93940 1.01787 1.00930 1.20720 0.96712 0.99228 0.92351 0.92176 1.20799 0.96745 0.93142 0.85178 1.44128 1.18690 1.41742 1.29468 1.20653 0.85131 0.97879 0.92546 1.19495 1.11405 1.13415 0.94334 0.91439 1.25731 1.00537 1.02420 0.96297 1.70281 1.38013 1.44305 1.06528 0.85323 0.78665 0.79430 0.76933 1.20378 1.21865 1.20471 1.19832 0.96319 0.95366 0.95188 1.20901 1.00945 0.94169 0.98339 1.21130 0.97271 1.00894 0.93816 1.21300 0.97983 0.93584 1.00791 1.18422 0.98331 0.95492 0.94693 1.21362 0.96559 0.95509 0.99469 1.21178 1.00265 0.95266 0.97230 1.21130 0.97260 1.00952 0.95020 1.21281 0.98612 0.94808 0.99937 1.18235 0.98140 0.94910 0.95678 0.92959 0.91901 0.93281 0.95276 0.93253 0.98819 0.95558 0.95093 0.94412 0.85474 0.83322 0.82774 0.82703 0.83189 0.84685 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 7.92 71.98 0.57 -3.70 16 2 C -0.07 -2.54 2.63 -11.54 -0.03 -2.57 16 3 H 0.06 2.44 5.60 -2.38 -0.01 2.43 16 4 C 0.17 7.14 4.94 86.38 0.43 7.57 16 5 N -0.62 -31.80 2.76 -726.94 -2.00 -33.81 16 6 C 0.18 9.29 7.84 127.77 1.00 10.29 16 7 C -0.26 -14.46 9.73 84.03 0.82 -13.65 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 C -0.06 -3.21 5.29 84.86 0.45 -2.76 16 10 N -0.94 -56.85 10.05 21.65 0.22 -56.63 16 11 Si 0.97 46.18 29.56 68.60 2.03 48.21 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 15 C -0.07 -2.13 4.80 -19.80 -0.10 -2.23 16 16 C -0.13 -3.43 8.75 22.04 0.19 -3.24 16 17 C -0.11 -2.50 9.95 22.04 0.22 -2.28 16 18 C -0.12 -2.55 9.77 22.33 0.22 -2.33 16 19 C -0.07 -1.80 5.74 -21.30 -0.12 -1.93 16 20 C -0.11 -2.32 9.77 22.33 0.22 -2.10 16 21 C -0.12 -2.52 9.95 22.04 0.22 -2.30 16 22 C -0.13 -3.17 9.95 22.04 0.22 -2.95 16 23 C -0.13 -4.01 9.36 22.33 0.21 -3.80 16 24 C -0.07 -2.18 5.74 -21.30 -0.12 -2.31 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.88 7.08 -2.39 -0.02 1.86 16 27 H 0.05 1.87 6.00 -2.38 -0.01 1.85 16 28 H 0.03 1.30 8.04 -2.39 -0.02 1.28 16 29 H 0.05 1.95 7.81 -2.39 -0.02 1.93 16 30 H -0.01 -0.37 7.50 -2.39 -0.02 -0.38 16 31 H 0.03 1.45 6.83 -2.39 -0.02 1.44 16 32 H 0.03 1.33 6.24 -2.39 -0.01 1.32 16 33 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 34 H 0.13 3.23 7.08 -2.91 -0.02 3.21 16 35 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.11 3.88 5.96 -2.91 -0.02 3.87 16 Total: -1.00 -66.49 318.51 5.65 -60.84 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.02 Total: 11.67 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 4.39 Total: -30.28 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -1.79 Total: -90.44 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -66.49 5.65 -60.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208714328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.972 kcal (2) G-P(sol) polarization free energy of solvation -66.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds