Wall clock time and date at job start Mon Mar 30 2020 01:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00025 * 2 1 4 4 H 1.48500 * 109.46830 * 269.99854 * 3 2 1 5 5 H 1.48504 * 109.47420 * 29.99425 * 3 2 1 6 6 H 1.48497 * 109.47491 * 149.99971 * 3 2 1 7 7 C 1.37876 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99539 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00157 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.54113 * 300.10134 * 9 7 2 11 11 C 1.53126 * 109.49982 * 60.19800 * 9 7 2 12 12 C 1.53099 * 109.15071 * 177.59173 * 11 9 7 13 13 C 1.53034 * 109.29509 * 302.33888 * 12 11 9 14 14 N 1.46847 * 109.51345 * 59.18740 * 13 12 11 15 15 C 1.46898 * 110.99897 * 174.16738 * 14 13 12 16 16 C 1.52999 * 109.47401 * 293.95089 * 15 14 13 17 17 C 1.52995 * 109.47357 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47028 * 180.02562 * 17 16 15 19 19 O 1.43753 * 109.62857 * 293.90351 * 18 17 16 20 20 C 1.44587 * 104.91822 * 215.70790 * 19 18 17 21 21 C 1.54913 * 101.63708 * 36.27425 * 20 19 18 22 22 O 1.43368 * 109.63094 * 174.69201 * 18 17 16 23 23 C 1.46854 * 111.19790 * 298.26320 * 14 13 12 24 24 H 0.97005 * 119.99516 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.52264 * 297.49837 * 11 9 7 26 26 H 1.09002 * 109.52383 * 57.62622 * 11 9 7 27 27 H 1.09007 * 109.48839 * 182.39531 * 12 11 9 28 28 H 1.09009 * 109.50682 * 62.29317 * 12 11 9 29 29 H 1.09002 * 109.46271 * 299.17460 * 13 12 11 30 30 H 1.08994 * 109.46242 * 179.19760 * 13 12 11 31 31 H 1.09000 * 109.47095 * 53.95538 * 15 14 13 32 32 H 1.09006 * 109.47048 * 173.94984 * 15 14 13 33 33 H 1.09001 * 109.46846 * 300.00269 * 16 15 14 34 34 H 1.09001 * 109.46724 * 59.99696 * 16 15 14 35 35 H 1.09001 * 109.47299 * 299.99914 * 17 16 15 36 36 H 1.09006 * 109.47134 * 59.99870 * 17 16 15 37 37 H 1.08994 * 109.63141 * 54.29585 * 18 17 16 38 38 H 1.08998 * 111.09110 * 278.15991 * 20 19 18 39 39 H 1.09005 * 110.94487 * 154.31938 * 20 19 18 40 40 H 1.08993 * 110.69672 * 205.95942 * 21 20 19 41 41 H 1.09003 * 110.69775 * 82.75201 * 21 20 19 42 42 H 1.08993 * 109.46229 * 181.76227 * 23 14 13 43 43 H 1.09008 * 109.45803 * 301.73838 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6230 -2.5566 0.8906 11 6 0.3737 -2.5839 -1.2504 12 6 -0.3417 -3.9373 -1.2717 13 6 0.6981 -5.0595 -1.2346 14 7 1.5111 -4.9348 -0.0181 15 6 2.4282 -6.0739 0.1212 16 6 1.6213 -7.3531 0.3523 17 6 2.5765 -8.5393 0.4980 18 6 1.7696 -9.8186 0.7286 19 8 1.0981 -9.7439 1.9974 20 6 1.1236 -11.0948 2.5122 21 6 2.5096 -11.5880 2.0267 22 8 2.6517 -10.9487 0.7420 23 6 2.2449 -3.6629 0.0021 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3642 -1.7820 -1.2331 26 1 0.9970 -2.4862 -2.1393 27 1 -0.9349 -4.0208 -2.1824 28 1 -0.9949 -4.0174 -0.4027 29 1 1.3422 -4.9871 -2.1109 30 1 0.1912 -6.0244 -1.2352 31 1 3.0202 -6.1770 -0.7882 32 1 3.0917 -5.9045 0.9693 33 1 1.0294 -7.2499 1.2618 34 1 0.9579 -7.5223 -0.4958 35 1 3.1688 -8.6427 -0.4112 36 1 3.2397 -8.3697 1.3464 37 1 1.0351 -9.9367 -0.0680 38 1 0.3226 -11.6944 2.0799 39 1 1.0677 -11.0981 3.6008 40 1 2.5167 -12.6727 1.9200 41 1 3.2951 -11.2617 2.7083 42 1 2.8615 -3.6136 0.8995 43 1 2.8816 -3.5969 -0.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209313803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:46 Heat of formation + Delta-G solvation = -104.612152 kcal Electronic energy + Delta-G solvation = -20963.705368 eV Core-core repulsion = 17815.153886 eV Total energy + Delta-G solvation = -3148.551482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58197 -38.28029 -35.27144 -34.97170 -33.06425 -31.51477 -29.99906 -29.52950 -26.68329 -24.91449 -23.72753 -23.20002 -21.68441 -21.60575 -20.31452 -18.53902 -17.48860 -17.02286 -16.37893 -16.19243 -15.18974 -14.96011 -14.64653 -14.49463 -14.03828 -13.62983 -13.42151 -13.15355 -13.06311 -12.86599 -12.52358 -12.21960 -12.01143 -11.82516 -11.42494 -11.36419 -11.09400 -10.90949 -10.69712 -10.61051 -10.52731 -10.37943 -9.97870 -9.83489 -9.77453 -9.40886 -8.94434 -8.65059 -8.25751 -7.57659 -5.93208 -3.99211 3.15431 3.33416 3.40072 3.43308 3.73835 4.24852 4.42462 4.54572 4.59149 4.69994 4.85534 4.97436 5.08230 5.19615 5.29332 5.36694 5.42165 5.54263 5.61195 5.75833 5.80087 5.86309 5.92588 6.01219 6.15086 6.28247 6.37186 6.47226 6.52418 6.58199 6.78299 6.80822 6.81870 7.03682 7.28319 7.46491 7.74860 7.80492 7.91061 8.14441 8.22869 8.53467 9.05005 9.64772 11.12804 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041760 B = 0.003136 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.343793 B = 8927.464518 C = 9129.773198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.061 3.939 14 N -0.539 5.539 15 C 0.057 3.943 16 C -0.111 4.111 17 C -0.129 4.129 18 C 0.233 3.767 19 O -0.371 6.371 20 C 0.015 3.985 21 C 0.020 3.980 22 O -0.388 6.388 23 C 0.068 3.932 24 H 0.259 0.741 25 H 0.090 0.910 26 H 0.029 0.971 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.021 0.979 30 H 0.059 0.941 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 -21.610 1.938 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.067 4.067 14 N -0.263 5.263 15 C -0.071 4.071 16 C -0.149 4.149 17 C -0.168 4.168 18 C 0.138 3.862 19 O -0.291 6.291 20 C -0.062 4.062 21 C -0.056 4.056 22 O -0.309 6.309 23 C -0.059 4.059 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.871 -21.338 2.268 21.540 hybrid contribution 1.010 0.772 -0.684 1.444 sum 2.881 -20.567 1.583 20.828 Atomic orbital electron populations 1.69901 1.05829 1.26250 1.50768 1.24939 0.94830 0.98924 0.95195 0.86631 0.79895 0.83677 0.77984 1.20823 1.21260 1.19980 1.21163 0.92817 0.90736 1.50565 0.92887 1.18663 0.92645 0.90273 0.94841 0.94763 1.21646 1.00016 0.94745 0.98460 1.21674 0.97236 0.96532 1.00102 1.22068 0.95722 0.98726 0.90163 1.61979 1.24296 1.02269 1.37776 1.22028 0.94388 0.90847 0.99853 1.21494 0.97855 0.92515 1.03026 1.21977 0.98715 0.92908 1.03154 1.24187 0.87755 0.87145 0.87094 1.89273 1.77910 1.27184 1.34771 1.24346 0.96830 0.83544 1.01456 1.24184 0.97216 0.98921 0.85285 1.88890 1.64946 1.42783 1.34321 1.22304 0.96387 0.88573 0.98632 0.93100 0.89173 0.95242 0.93656 0.92105 0.96108 0.92240 0.95791 0.91268 0.90333 0.91980 0.90164 0.90797 0.89815 0.90710 0.87357 0.88394 0.90613 0.92362 0.96446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 11.36 55.43 0.63 -25.11 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.37 8.56 -34.44 -0.29 -14.66 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.03 0.98 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.69 5.03 -26.62 -0.13 -2.82 16 12 C -0.12 -2.38 6.09 -26.66 -0.16 -2.54 16 13 C 0.06 1.12 5.29 -3.84 -0.02 1.10 16 14 N -0.54 -10.36 4.66 -234.67 -1.09 -11.45 16 15 C 0.06 0.90 4.96 -3.83 -0.02 0.88 16 16 C -0.11 -1.48 5.06 -26.73 -0.14 -1.62 16 17 C -0.13 -1.49 5.30 -26.73 -0.14 -1.63 16 18 C 0.23 2.58 4.02 37.16 0.15 2.73 16 19 O -0.37 -4.30 10.93 -59.05 -0.65 -4.94 16 20 C 0.01 0.11 7.95 38.17 0.30 0.41 16 21 C 0.02 0.15 8.07 38.17 0.31 0.46 16 22 O -0.39 -4.24 11.22 -59.05 -0.66 -4.90 16 23 C 0.07 1.50 4.68 -3.83 -0.02 1.48 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.95 6.22 -51.93 -0.32 0.63 16 31 H 0.02 0.37 8.12 -51.93 -0.42 -0.06 16 32 H 0.07 1.07 7.98 -51.93 -0.41 0.65 16 33 H 0.08 1.17 7.86 -51.93 -0.41 0.76 16 34 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.27 8.01 -51.93 -0.42 0.85 16 43 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -30.29 334.30 -9.89 -40.18 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.68 Total: -1.97 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.47 Total: -13.37 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.46 Total: -36.56 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -1.31 Total: -9.84 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.29 -9.89 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209313803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.428 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds