Wall clock time and date at job start Mon Mar 30 2020 01:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00025 * 2 1 4 4 H 1.48500 * 109.46830 * 269.99854 * 3 2 1 5 5 H 1.48504 * 109.47420 * 29.99425 * 3 2 1 6 6 H 1.48497 * 109.47491 * 149.99971 * 3 2 1 7 7 C 1.37876 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99539 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00157 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.54113 * 300.10134 * 9 7 2 11 11 C 1.53126 * 109.49982 * 60.19800 * 9 7 2 12 12 C 1.53099 * 109.15071 * 177.59173 * 11 9 7 13 13 C 1.53034 * 109.29509 * 302.33888 * 12 11 9 14 14 N 1.46847 * 109.51345 * 59.18740 * 13 12 11 15 15 C 1.46898 * 110.99897 * 174.16738 * 14 13 12 16 16 C 1.52999 * 109.47401 * 293.95089 * 15 14 13 17 17 C 1.52995 * 109.47357 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47028 * 180.02562 * 17 16 15 19 19 O 1.43753 * 109.62857 * 293.90351 * 18 17 16 20 20 C 1.44587 * 104.91822 * 215.70790 * 19 18 17 21 21 C 1.54913 * 101.63708 * 36.27425 * 20 19 18 22 22 O 1.43368 * 109.63094 * 174.69201 * 18 17 16 23 23 C 1.46854 * 111.19790 * 298.26320 * 14 13 12 24 24 H 0.97005 * 119.99516 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.52264 * 297.49837 * 11 9 7 26 26 H 1.09002 * 109.52383 * 57.62622 * 11 9 7 27 27 H 1.09007 * 109.48839 * 182.39531 * 12 11 9 28 28 H 1.09009 * 109.50682 * 62.29317 * 12 11 9 29 29 H 1.09002 * 109.46271 * 299.17460 * 13 12 11 30 30 H 1.08994 * 109.46242 * 179.19760 * 13 12 11 31 31 H 1.09000 * 109.47095 * 53.95538 * 15 14 13 32 32 H 1.09006 * 109.47048 * 173.94984 * 15 14 13 33 33 H 1.09001 * 109.46846 * 300.00269 * 16 15 14 34 34 H 1.09001 * 109.46724 * 59.99696 * 16 15 14 35 35 H 1.09001 * 109.47299 * 299.99914 * 17 16 15 36 36 H 1.09006 * 109.47134 * 59.99870 * 17 16 15 37 37 H 1.08994 * 109.63141 * 54.29585 * 18 17 16 38 38 H 1.08998 * 111.09110 * 278.15991 * 20 19 18 39 39 H 1.09005 * 110.94487 * 154.31938 * 20 19 18 40 40 H 1.08993 * 110.69672 * 205.95942 * 21 20 19 41 41 H 1.09003 * 110.69775 * 82.75201 * 21 20 19 42 42 H 1.08993 * 109.46229 * 181.76227 * 23 14 13 43 43 H 1.09008 * 109.45803 * 301.73838 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6230 -2.5566 0.8906 11 6 0.3737 -2.5839 -1.2504 12 6 -0.3417 -3.9373 -1.2717 13 6 0.6981 -5.0595 -1.2346 14 7 1.5111 -4.9348 -0.0181 15 6 2.4282 -6.0739 0.1212 16 6 1.6213 -7.3531 0.3523 17 6 2.5765 -8.5393 0.4980 18 6 1.7696 -9.8186 0.7286 19 8 1.0981 -9.7439 1.9974 20 6 1.1236 -11.0948 2.5122 21 6 2.5096 -11.5880 2.0267 22 8 2.6517 -10.9487 0.7420 23 6 2.2449 -3.6629 0.0021 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3642 -1.7820 -1.2331 26 1 0.9970 -2.4862 -2.1393 27 1 -0.9349 -4.0208 -2.1824 28 1 -0.9949 -4.0174 -0.4027 29 1 1.3422 -4.9871 -2.1109 30 1 0.1912 -6.0244 -1.2352 31 1 3.0202 -6.1770 -0.7882 32 1 3.0917 -5.9045 0.9693 33 1 1.0294 -7.2499 1.2618 34 1 0.9579 -7.5223 -0.4958 35 1 3.1688 -8.6427 -0.4112 36 1 3.2397 -8.3697 1.3464 37 1 1.0351 -9.9367 -0.0680 38 1 0.3226 -11.6944 2.0799 39 1 1.0677 -11.0981 3.6008 40 1 2.5167 -12.6727 1.9200 41 1 3.2951 -11.2617 2.7083 42 1 2.8615 -3.6136 0.8995 43 1 2.8816 -3.5969 -0.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209313803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:46 Heat of formation + Delta-G solvation = -123.942234 kcal Electronic energy + Delta-G solvation = -20964.543583 eV Core-core repulsion = 17815.153886 eV Total energy + Delta-G solvation = -3149.389697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30993 -39.88481 -36.45601 -35.98321 -34.73737 -33.05979 -31.70730 -30.54259 -27.81866 -26.91437 -24.81383 -24.08426 -23.37985 -22.74151 -21.64922 -20.35372 -18.43033 -18.20708 -17.72352 -17.08936 -16.75079 -16.28732 -16.04935 -15.71807 -15.22932 -14.97416 -14.62571 -14.55666 -14.36979 -14.15208 -13.81279 -13.66973 -13.34482 -12.94716 -12.86775 -12.78328 -12.65012 -12.48279 -12.31169 -12.10853 -11.86331 -11.70847 -11.45123 -11.37130 -11.16179 -10.86493 -10.66065 -10.54763 -10.36258 -9.11100 -8.07754 -6.22202 1.41226 1.41637 1.52263 2.42637 2.49523 2.92913 3.18864 3.20435 3.69915 3.86488 3.95241 4.06669 4.14152 4.19885 4.23903 4.32361 4.34010 4.48069 4.59922 4.63068 4.63841 4.65774 4.72178 4.77105 4.85071 4.90490 4.91575 4.99686 5.04634 5.11577 5.19253 5.28648 5.40694 5.42078 5.53211 5.63765 5.97540 6.09588 6.13370 6.22038 6.39944 6.46906 6.90532 7.45589 8.97009 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041760 B = 0.003136 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.343793 B = 8927.464518 C = 9129.773198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.051 0.949 9 C 0.052 3.948 10 H -0.005 1.005 11 C -0.104 4.104 12 C -0.111 4.111 13 C 0.065 3.935 14 N -0.551 5.551 15 C 0.058 3.942 16 C -0.098 4.098 17 C -0.123 4.123 18 C 0.233 3.767 19 O -0.398 6.398 20 C 0.010 3.990 21 C 0.015 3.985 22 O -0.405 6.405 23 C 0.081 3.919 24 H 0.260 0.740 25 H 0.058 0.942 26 H 0.022 0.978 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.025 0.975 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -23.253 1.564 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.069 0.931 9 C 0.034 3.966 10 H 0.014 0.986 11 C -0.142 4.142 12 C -0.149 4.149 13 C -0.063 4.063 14 N -0.276 5.276 15 C -0.070 4.070 16 C -0.136 4.136 17 C -0.161 4.161 18 C 0.138 3.862 19 O -0.319 6.319 20 C -0.066 4.066 21 C -0.060 4.060 22 O -0.327 6.327 23 C -0.046 4.046 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.109 0.891 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 2.495 -23.008 1.899 23.221 hybrid contribution 0.801 1.231 -0.515 1.556 sum 3.296 -21.777 1.384 22.068 Atomic orbital electron populations 1.70046 1.07200 1.27080 1.51190 1.25744 0.95694 1.02391 0.94754 0.85596 0.78727 0.79329 0.78229 1.20093 1.20822 1.19293 1.21532 0.92981 0.92229 1.50871 0.93086 1.18586 0.92999 0.91312 0.93749 0.98646 1.21460 0.99100 0.96349 0.97331 1.21594 0.97586 0.94872 1.00874 1.22077 0.95184 0.99185 0.89839 1.61922 1.24994 1.02070 1.38590 1.22099 0.94234 0.90328 1.00293 1.21340 0.97779 0.91992 1.02477 1.21892 0.98305 0.92551 1.03359 1.24142 0.87809 0.86931 0.87309 1.89245 1.78036 1.29498 1.35090 1.24607 0.97311 0.82040 1.02625 1.24422 0.97272 1.00216 0.84116 1.88865 1.65075 1.42783 1.35976 1.21977 0.95322 0.89028 0.98299 0.93047 0.92387 0.95906 0.91147 0.93203 0.95653 0.89136 0.94756 0.91391 0.91933 0.91192 0.89320 0.91322 0.89199 0.89387 0.85586 0.85859 0.90288 0.92728 0.96709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.38 11.36 21.45 0.24 -54.13 16 2 C 0.01 0.73 5.30 84.65 0.45 1.18 16 3 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -30.72 8.56 25.60 0.22 -30.50 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.05 2.77 2.26 -11.49 -0.03 2.74 16 10 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 11 C -0.10 -5.16 5.03 30.67 0.15 -5.01 16 12 C -0.11 -4.43 6.09 30.64 0.19 -4.24 16 13 C 0.06 2.24 5.29 86.32 0.46 2.70 16 14 N -0.55 -20.71 4.66 -896.35 -4.17 -24.88 16 15 C 0.06 1.73 4.96 86.30 0.43 2.16 16 16 C -0.10 -2.44 5.06 30.59 0.15 -2.29 16 17 C -0.12 -2.62 5.30 30.59 0.16 -2.45 16 18 C 0.23 4.75 4.02 71.98 0.29 5.04 16 19 O -0.40 -8.63 10.93 -126.20 -1.38 -10.00 16 20 C 0.01 0.13 7.95 72.64 0.58 0.71 16 21 C 0.02 0.20 8.07 72.64 0.59 0.78 16 22 O -0.41 -8.08 11.22 -126.20 -1.42 -9.49 16 23 C 0.08 3.61 4.68 86.32 0.40 4.01 16 24 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 25 H 0.06 3.23 6.16 -2.39 -0.01 3.22 16 26 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 2.61 6.22 -2.39 -0.01 2.60 16 31 H 0.03 0.97 8.12 -2.39 -0.02 0.95 16 32 H 0.07 2.03 7.98 -2.38 -0.02 2.01 16 33 H 0.06 1.78 7.86 -2.39 -0.02 1.77 16 34 H 0.07 1.63 6.44 -2.39 -0.02 1.62 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.05 2.41 8.01 -2.39 -0.02 2.39 16 43 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -66.11 334.30 0.30 -65.81 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.95 Total: 11.28 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 4.04 Total: -25.18 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -3.93 Total: -79.02 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -2.79 Total: -19.50 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.11 0.30 -65.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209313803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.129 kcal (2) G-P(sol) polarization free energy of solvation -66.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds