Wall clock time and date at job start Mon Mar 30 2020 01:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35453 * 126.77106 * 2 1 4 4 C 1.41380 * 103.98329 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.80398 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.46721 * 0.02562 * 5 4 3 7 7 C 1.42907 * 113.99979 * 174.41982 * 6 5 4 8 8 H 1.09010 * 109.46809 * 333.88660 * 7 6 5 9 9 C 1.50701 * 109.47088 * 213.89327 * 7 6 5 10 10 H 1.07999 * 119.99987 * 354.05751 * 9 7 6 11 11 C 1.37872 * 119.99946 * 174.06827 * 9 7 6 12 12 N 1.31517 * 120.00101 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00139 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47025 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47280 * 119.99721 * 13 11 9 16 16 H 1.48499 * 109.47366 * 239.99671 * 13 11 9 17 17 C 1.52990 * 109.47345 * 93.88818 * 7 6 5 18 18 N 1.46899 * 109.47157 * 58.65710 * 17 7 6 19 19 C 1.46896 * 109.47053 * 63.94729 * 18 17 7 20 20 C 1.46903 * 109.47109 * 183.94632 * 18 17 7 21 21 C 1.46899 * 109.47147 * 303.94514 * 18 17 7 22 22 N 1.30180 * 106.39571 * 0.26917 * 4 3 2 23 23 O 1.20924 * 111.60307 * 359.52789 * 22 4 3 24 24 H 1.09001 * 109.47032 * 90.00323 * 1 2 3 25 25 H 1.09000 * 109.47215 * 209.99590 * 1 2 3 26 26 H 1.08997 * 109.47356 * 329.99887 * 1 2 3 27 27 H 1.07995 * 128.00814 * 359.94839 * 3 2 1 28 28 H 1.08998 * 109.46936 * 120.00166 * 5 4 3 29 29 H 1.08993 * 109.47453 * 240.00988 * 5 4 3 30 30 H 0.96996 * 120.00183 * 180.02562 * 12 11 9 31 31 H 1.09000 * 109.47113 * 178.65983 * 17 7 6 32 32 H 1.09006 * 109.47226 * 298.65398 * 17 7 6 33 33 H 1.08999 * 109.47114 * 40.82936 * 19 18 17 34 34 H 1.08999 * 109.46869 * 160.83121 * 19 18 17 35 35 H 1.09006 * 109.46964 * 280.82779 * 19 18 17 36 36 H 1.09004 * 109.47028 * 59.99941 * 20 18 17 37 37 H 1.09001 * 109.47362 * 179.97438 * 20 18 17 38 38 H 1.08997 * 109.47132 * 299.99782 * 20 18 17 39 39 H 1.08993 * 109.47143 * 81.57358 * 21 18 17 40 40 H 1.09001 * 109.47041 * 201.57178 * 21 18 17 41 41 H 1.08999 * 109.46869 * 321.57107 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3178 1.0850 0.0000 4 6 3.6213 0.5374 0.0006 5 6 4.9210 1.3002 0.0003 6 8 4.6498 2.7032 -0.0001 7 6 5.8152 3.5206 0.1266 8 1 6.5951 2.9633 0.6457 9 6 5.4760 4.7607 0.9128 10 1 4.4526 4.9571 1.1965 11 6 6.4721 5.6446 1.2697 12 7 7.7183 5.4053 0.9245 13 14 6.0516 7.1822 2.2436 14 1 4.5900 7.2188 2.5041 15 1 6.7847 7.1662 3.5348 16 1 6.4455 8.3841 1.4656 17 6 6.3126 3.9186 -1.2644 18 7 5.2502 4.6417 -1.9760 19 6 4.9550 5.8963 -1.2713 20 6 5.6933 4.9411 -3.3442 21 6 4.0398 3.8106 -2.0242 22 7 3.4764 -0.7563 -0.0050 23 8 2.3095 -1.0736 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 2.0343 2.1271 -0.0008 28 1 5.4942 1.0415 0.8906 29 1 5.4945 1.0406 -0.8894 30 1 8.4192 6.0269 1.1759 31 1 7.1874 4.5615 -1.1671 32 1 6.5806 3.0228 -1.8246 33 1 5.8863 6.3521 -0.9353 34 1 4.4389 6.5792 -1.9460 35 1 4.3205 5.6884 -0.4096 36 1 5.9124 4.0101 -3.8671 37 1 4.9048 5.4772 -3.8724 38 1 6.5914 5.5578 -3.3084 39 1 3.4992 3.9010 -1.0821 40 1 3.4021 4.1447 -2.8426 41 1 4.3202 2.7694 -2.1838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222977588.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:54 Heat of formation + Delta-G solvation = 123.274910 kcal Electronic energy + Delta-G solvation = -22252.670000 eV Core-core repulsion = 19062.230271 eV Total energy + Delta-G solvation = -3190.439729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.165 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.84689 -43.16616 -38.83603 -35.55960 -34.76059 -34.23826 -31.40362 -30.18686 -29.91367 -28.75684 -28.47745 -27.43940 -24.55249 -23.97871 -22.84293 -21.30324 -19.14227 -18.62122 -18.41715 -18.15566 -18.12717 -17.69009 -16.66420 -16.40143 -16.02591 -15.68679 -14.96329 -14.85987 -14.65819 -14.56161 -14.27624 -13.95210 -13.89290 -13.78981 -13.68157 -13.45176 -13.36504 -13.23480 -12.99573 -12.54865 -12.48988 -12.22810 -12.05317 -11.69069 -11.30905 -11.00067 -10.43357 -10.24559 -10.16064 -8.01138 -6.09321 0.52694 0.62978 1.27755 1.88516 2.03221 2.09783 2.15410 2.39198 2.59890 2.63441 2.65955 2.82574 3.30739 3.37079 3.43371 3.47450 3.68583 3.74101 3.80981 3.85580 3.99617 4.05911 4.08514 4.18291 4.20590 4.33817 4.37011 4.38455 4.43393 4.45087 4.52271 4.72135 4.78919 4.86589 4.91445 5.11516 5.17968 5.89883 6.08376 6.34627 6.99974 7.33169 7.59507 9.04770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.035 4.035 3 C -0.213 4.213 4 C 0.019 3.981 5 C 0.138 3.862 6 O -0.384 6.384 7 C 0.198 3.802 8 H 0.069 0.931 9 C -0.552 4.552 10 H 0.084 0.916 11 C 0.070 3.930 12 N -0.876 5.876 13 Si 0.899 3.101 14 H -0.264 1.264 15 H -0.270 1.270 16 H -0.274 1.274 17 C -0.021 4.021 18 N -0.248 5.248 19 C -0.035 4.035 20 C -0.042 4.042 21 C -0.025 4.025 22 N -0.362 5.362 23 O 0.100 5.900 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.173 0.827 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.283 0.717 31 H 0.146 0.854 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.152 0.848 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 0.656 -11.745 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 C -0.235 4.235 4 C -0.140 4.140 5 C 0.061 3.939 6 O -0.303 6.303 7 C 0.142 3.858 8 H 0.087 0.913 9 C -0.588 4.588 10 H 0.102 0.898 11 C -0.137 4.137 12 N -0.510 5.510 13 Si 0.724 3.276 14 H -0.187 1.187 15 H -0.195 1.195 16 H -0.199 1.199 17 C -0.142 4.142 18 N 0.094 4.906 19 C -0.176 4.176 20 C -0.184 4.184 21 C -0.167 4.167 22 N -0.067 5.067 23 O 0.033 5.967 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.191 0.809 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.169 0.831 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.154 0.846 40 H 0.109 0.891 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.906 -0.212 -11.745 13.148 hybrid contribution 0.123 1.361 0.602 1.493 sum -5.783 1.149 -11.143 12.606 Atomic orbital electron populations 1.20363 0.83888 1.04934 1.04154 1.24609 0.96514 0.86140 1.02573 1.22303 0.90686 1.00986 1.09476 1.23287 0.97249 0.90083 1.03369 1.20337 0.89749 0.82119 1.01698 1.87928 1.34392 1.13974 1.94052 1.20171 0.85392 0.91497 0.88782 0.91306 1.21007 0.95971 1.04371 1.37441 0.89806 1.24998 0.94494 0.99448 0.94783 1.69732 1.00179 1.37537 1.43552 0.86348 0.79846 0.80510 0.80914 1.18743 1.19524 1.19929 1.24742 0.91961 0.99165 0.98347 1.45705 1.15433 1.16161 1.13291 1.24749 1.08794 0.83116 1.00893 1.24022 1.05520 1.06470 0.82409 1.24213 0.87016 0.97500 1.07941 1.73832 0.97271 1.15636 1.19996 1.84847 1.11077 1.33205 1.67543 0.89360 0.89700 0.88871 0.80906 0.90619 0.91849 0.90653 0.83682 0.89475 0.86510 0.90228 0.83058 0.87471 0.87249 0.86922 0.84623 0.89080 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.30 10.45 36.01 0.38 0.67 16 2 C -0.03 0.01 7.49 -35.30 -0.26 -0.25 16 3 C -0.21 0.10 10.45 -39.38 -0.41 -0.31 16 4 C 0.02 0.03 7.28 -82.10 -0.60 -0.57 16 5 C 0.14 -0.02 6.07 36.01 0.22 0.20 16 6 O -0.38 0.38 5.28 -35.23 -0.19 0.19 16 7 C 0.20 0.12 2.24 -27.89 -0.06 0.06 16 8 H 0.07 0.27 7.66 -51.92 -0.40 -0.13 16 9 C -0.55 -1.89 5.29 -34.44 -0.18 -2.07 16 10 H 0.08 0.33 7.03 -52.49 -0.37 -0.04 16 11 C 0.07 0.39 3.65 -17.82 -0.07 0.33 16 12 N -0.88 -6.13 11.76 55.43 0.65 -5.47 16 13 Si 0.90 5.35 29.54 -169.99 -5.02 0.33 16 14 H -0.26 -1.59 7.11 56.52 0.40 -1.19 16 15 H -0.27 -2.30 7.11 56.52 0.40 -1.90 16 16 H -0.27 -1.65 7.11 56.52 0.40 -1.24 16 17 C -0.02 0.08 4.06 -3.83 -0.02 0.06 16 18 N -0.25 1.88 0.05 -395.63 -0.02 1.86 16 19 C -0.04 0.20 6.89 60.06 0.41 0.61 16 20 C -0.04 0.44 7.85 60.07 0.47 0.91 16 21 C -0.03 0.21 7.00 60.06 0.42 0.63 16 22 N -0.36 -1.28 12.07 33.43 0.40 -0.88 16 23 O 0.10 0.25 11.20 17.18 0.19 0.44 16 24 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16 25 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 26 H 0.09 -0.47 8.14 -51.93 -0.42 -0.89 16 27 H 0.17 -0.45 8.05 -52.49 -0.42 -0.87 16 28 H 0.08 0.11 7.96 -51.93 -0.41 -0.31 16 29 H 0.06 -0.12 8.14 -51.93 -0.42 -0.55 16 30 H 0.28 2.18 8.31 -40.82 -0.34 1.84 16 31 H 0.15 -0.20 6.29 -51.93 -0.33 -0.52 16 32 H 0.09 -0.49 8.05 -51.93 -0.42 -0.90 16 33 H 0.12 -0.34 6.07 -51.93 -0.31 -0.66 16 34 H 0.08 -0.68 7.81 -51.93 -0.41 -1.09 16 35 H 0.15 -0.57 4.49 -51.93 -0.23 -0.80 16 36 H 0.11 -1.22 8.12 -51.93 -0.42 -1.64 16 37 H 0.11 -1.33 7.87 -51.93 -0.41 -1.74 16 38 H 0.11 -1.14 8.14 -51.93 -0.42 -1.56 16 39 H 0.14 -0.86 5.78 -51.93 -0.30 -1.16 16 40 H 0.09 -0.97 7.76 -51.93 -0.40 -1.37 16 41 H 0.10 -0.79 6.78 -51.93 -0.35 -1.14 16 LS Contribution 318.69 15.07 4.80 4.80 Total: 0.00 -12.68 318.69 -5.31 -17.99 By element: Atomic # 1 Polarization: -13.09 SS G_CDS: -6.44 Total: -19.53 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 0.30 Total: 0.27 kcal Atomic # 7 Polarization: -5.53 SS G_CDS: 1.04 Total: -4.49 kcal Atomic # 8 Polarization: 0.63 SS G_CDS: 0.01 Total: 0.63 kcal Atomic # 14 Polarization: 5.35 SS G_CDS: -5.02 Total: 0.33 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -12.68 -5.31 -17.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222977588.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.262 kcal (2) G-P(sol) polarization free energy of solvation -12.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds