Wall clock time and date at job start Mon Mar 30 2020 01:17:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.35453 * 126.77106 * 2 1
4 4 C 1.41380 * 103.98329 * 179.97438 * 3 2 1
5 5 C 1.50701 * 126.80398 * 179.97438 * 4 3 2
6 6 O 1.42900 * 109.46721 * 0.02562 * 5 4 3
7 7 C 1.42907 * 113.99979 * 174.41982 * 6 5 4
8 8 H 1.09010 * 109.46809 * 333.88660 * 7 6 5
9 9 C 1.50701 * 109.47088 * 213.89327 * 7 6 5
10 10 H 1.07999 * 119.99987 * 354.05751 * 9 7 6
11 11 C 1.37872 * 119.99946 * 174.06827 * 9 7 6
12 12 N 1.31517 * 120.00101 * 359.97438 * 11 9 7
13 13 Si 1.86799 * 120.00139 * 179.97438 * 11 9 7
14 14 H 1.48506 * 109.47025 * 359.97438 * 13 11 9
15 15 H 1.48494 * 109.47280 * 119.99721 * 13 11 9
16 16 H 1.48499 * 109.47366 * 239.99671 * 13 11 9
17 17 C 1.52990 * 109.47345 * 93.88818 * 7 6 5
18 18 N 1.46899 * 109.47157 * 58.65710 * 17 7 6
19 19 C 1.46896 * 109.47053 * 63.94729 * 18 17 7
20 20 C 1.46903 * 109.47109 * 183.94632 * 18 17 7
21 21 C 1.46899 * 109.47147 * 303.94514 * 18 17 7
22 22 N 1.30180 * 106.39571 * 0.26917 * 4 3 2
23 23 O 1.20924 * 111.60307 * 359.52789 * 22 4 3
24 24 H 1.09001 * 109.47032 * 90.00323 * 1 2 3
25 25 H 1.09000 * 109.47215 * 209.99590 * 1 2 3
26 26 H 1.08997 * 109.47356 * 329.99887 * 1 2 3
27 27 H 1.07995 * 128.00814 * 359.94839 * 3 2 1
28 28 H 1.08998 * 109.46936 * 120.00166 * 5 4 3
29 29 H 1.08993 * 109.47453 * 240.00988 * 5 4 3
30 30 H 0.96996 * 120.00183 * 180.02562 * 12 11 9
31 31 H 1.09000 * 109.47113 * 178.65983 * 17 7 6
32 32 H 1.09006 * 109.47226 * 298.65398 * 17 7 6
33 33 H 1.08999 * 109.47114 * 40.82936 * 19 18 17
34 34 H 1.08999 * 109.46869 * 160.83121 * 19 18 17
35 35 H 1.09006 * 109.46964 * 280.82779 * 19 18 17
36 36 H 1.09004 * 109.47028 * 59.99941 * 20 18 17
37 37 H 1.09001 * 109.47362 * 179.97438 * 20 18 17
38 38 H 1.08997 * 109.47132 * 299.99782 * 20 18 17
39 39 H 1.08993 * 109.47143 * 81.57358 * 21 18 17
40 40 H 1.09001 * 109.47041 * 201.57178 * 21 18 17
41 41 H 1.08999 * 109.46869 * 321.57107 * 21 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3178 1.0850 0.0000
4 6 3.6213 0.5374 0.0006
5 6 4.9210 1.3002 0.0003
6 8 4.6498 2.7032 -0.0001
7 6 5.8152 3.5206 0.1266
8 1 6.5951 2.9633 0.6457
9 6 5.4760 4.7607 0.9128
10 1 4.4526 4.9571 1.1965
11 6 6.4721 5.6446 1.2697
12 7 7.7183 5.4053 0.9245
13 14 6.0516 7.1822 2.2436
14 1 4.5900 7.2188 2.5041
15 1 6.7847 7.1662 3.5348
16 1 6.4455 8.3841 1.4656
17 6 6.3126 3.9186 -1.2644
18 7 5.2502 4.6417 -1.9760
19 6 4.9550 5.8963 -1.2713
20 6 5.6933 4.9411 -3.3442
21 6 4.0398 3.8106 -2.0242
22 7 3.4764 -0.7563 -0.0050
23 8 2.3095 -1.0736 0.0005
24 1 -0.3633 -0.0001 -1.0277
25 1 -0.3634 -0.8900 0.5138
26 1 -0.3634 0.8899 0.5138
27 1 2.0343 2.1271 -0.0008
28 1 5.4942 1.0415 0.8906
29 1 5.4945 1.0406 -0.8894
30 1 8.4192 6.0269 1.1759
31 1 7.1874 4.5615 -1.1671
32 1 6.5806 3.0228 -1.8246
33 1 5.8863 6.3521 -0.9353
34 1 4.4389 6.5792 -1.9460
35 1 4.3205 5.6884 -0.4096
36 1 5.9124 4.0101 -3.8671
37 1 4.9048 5.4772 -3.8724
38 1 6.5914 5.5578 -3.3084
39 1 3.4992 3.9010 -1.0821
40 1 3.4021 4.1447 -2.8426
41 1 4.3202 2.7694 -2.1838
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001222977588.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:17:54
Heat of formation + Delta-G solvation = 123.274910 kcal
Electronic energy + Delta-G solvation = -22252.670000 eV
Core-core repulsion = 19062.230271 eV
Total energy + Delta-G solvation = -3190.439729 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.165 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-45.84689 -43.16616 -38.83603 -35.55960 -34.76059 -34.23826 -31.40362 -30.18686
-29.91367 -28.75684 -28.47745 -27.43940 -24.55249 -23.97871 -22.84293 -21.30324
-19.14227 -18.62122 -18.41715 -18.15566 -18.12717 -17.69009 -16.66420 -16.40143
-16.02591 -15.68679 -14.96329 -14.85987 -14.65819 -14.56161 -14.27624 -13.95210
-13.89290 -13.78981 -13.68157 -13.45176 -13.36504 -13.23480 -12.99573 -12.54865
-12.48988 -12.22810 -12.05317 -11.69069 -11.30905 -11.00067 -10.43357 -10.24559
-10.16064 -8.01138 -6.09321 0.52694 0.62978 1.27755 1.88516 2.03221
2.09783 2.15410 2.39198 2.59890 2.63441 2.65955 2.82574 3.30739
3.37079 3.43371 3.47450 3.68583 3.74101 3.80981 3.85580 3.99617
4.05911 4.08514 4.18291 4.20590 4.33817 4.37011 4.38455 4.43393
4.45087 4.52271 4.72135 4.78919 4.86589 4.91445 5.11516 5.17968
5.89883 6.08376 6.34627 6.99974 7.33169 7.59507 9.04770
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C -0.035 4.035
3 C -0.213 4.213
4 C 0.019 3.981
5 C 0.138 3.862
6 O -0.384 6.384
7 C 0.198 3.802
8 H 0.069 0.931
9 C -0.552 4.552
10 H 0.084 0.916
11 C 0.070 3.930
12 N -0.876 5.876
13 Si 0.899 3.101
14 H -0.264 1.264
15 H -0.270 1.270
16 H -0.274 1.274
17 C -0.021 4.021
18 N -0.248 5.248
19 C -0.035 4.035
20 C -0.042 4.042
21 C -0.025 4.025
22 N -0.362 5.362
23 O 0.100 5.900
24 H 0.088 0.912
25 H 0.084 0.916
26 H 0.093 0.907
27 H 0.173 0.827
28 H 0.076 0.924
29 H 0.064 0.936
30 H 0.283 0.717
31 H 0.146 0.854
32 H 0.087 0.913
33 H 0.116 0.884
34 H 0.079 0.921
35 H 0.152 0.848
36 H 0.107 0.893
37 H 0.109 0.891
38 H 0.112 0.888
39 H 0.136 0.864
40 H 0.091 0.909
41 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.808 0.656 -11.745 13.591
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.098 4.098
3 C -0.235 4.235
4 C -0.140 4.140
5 C 0.061 3.939
6 O -0.303 6.303
7 C 0.142 3.858
8 H 0.087 0.913
9 C -0.588 4.588
10 H 0.102 0.898
11 C -0.137 4.137
12 N -0.510 5.510
13 Si 0.724 3.276
14 H -0.187 1.187
15 H -0.195 1.195
16 H -0.199 1.199
17 C -0.142 4.142
18 N 0.094 4.906
19 C -0.176 4.176
20 C -0.184 4.184
21 C -0.167 4.167
22 N -0.067 5.067
23 O 0.033 5.967
24 H 0.106 0.894
25 H 0.103 0.897
26 H 0.111 0.889
27 H 0.191 0.809
28 H 0.094 0.906
29 H 0.082 0.918
30 H 0.093 0.907
31 H 0.163 0.837
32 H 0.105 0.895
33 H 0.135 0.865
34 H 0.098 0.902
35 H 0.169 0.831
36 H 0.125 0.875
37 H 0.128 0.872
38 H 0.131 0.869
39 H 0.154 0.846
40 H 0.109 0.891
41 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -5.906 -0.212 -11.745 13.148
hybrid contribution 0.123 1.361 0.602 1.493
sum -5.783 1.149 -11.143 12.606
Atomic orbital electron populations
1.20363 0.83888 1.04934 1.04154 1.24609 0.96514 0.86140 1.02573
1.22303 0.90686 1.00986 1.09476 1.23287 0.97249 0.90083 1.03369
1.20337 0.89749 0.82119 1.01698 1.87928 1.34392 1.13974 1.94052
1.20171 0.85392 0.91497 0.88782 0.91306 1.21007 0.95971 1.04371
1.37441 0.89806 1.24998 0.94494 0.99448 0.94783 1.69732 1.00179
1.37537 1.43552 0.86348 0.79846 0.80510 0.80914 1.18743 1.19524
1.19929 1.24742 0.91961 0.99165 0.98347 1.45705 1.15433 1.16161
1.13291 1.24749 1.08794 0.83116 1.00893 1.24022 1.05520 1.06470
0.82409 1.24213 0.87016 0.97500 1.07941 1.73832 0.97271 1.15636
1.19996 1.84847 1.11077 1.33205 1.67543 0.89360 0.89700 0.88871
0.80906 0.90619 0.91849 0.90653 0.83682 0.89475 0.86510 0.90228
0.83058 0.87471 0.87249 0.86922 0.84623 0.89080 0.87747
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 0.30 10.45 36.01 0.38 0.67 16
2 C -0.03 0.01 7.49 -35.30 -0.26 -0.25 16
3 C -0.21 0.10 10.45 -39.38 -0.41 -0.31 16
4 C 0.02 0.03 7.28 -82.10 -0.60 -0.57 16
5 C 0.14 -0.02 6.07 36.01 0.22 0.20 16
6 O -0.38 0.38 5.28 -35.23 -0.19 0.19 16
7 C 0.20 0.12 2.24 -27.89 -0.06 0.06 16
8 H 0.07 0.27 7.66 -51.92 -0.40 -0.13 16
9 C -0.55 -1.89 5.29 -34.44 -0.18 -2.07 16
10 H 0.08 0.33 7.03 -52.49 -0.37 -0.04 16
11 C 0.07 0.39 3.65 -17.82 -0.07 0.33 16
12 N -0.88 -6.13 11.76 55.43 0.65 -5.47 16
13 Si 0.90 5.35 29.54 -169.99 -5.02 0.33 16
14 H -0.26 -1.59 7.11 56.52 0.40 -1.19 16
15 H -0.27 -2.30 7.11 56.52 0.40 -1.90 16
16 H -0.27 -1.65 7.11 56.52 0.40 -1.24 16
17 C -0.02 0.08 4.06 -3.83 -0.02 0.06 16
18 N -0.25 1.88 0.05 -395.63 -0.02 1.86 16
19 C -0.04 0.20 6.89 60.06 0.41 0.61 16
20 C -0.04 0.44 7.85 60.07 0.47 0.91 16
21 C -0.03 0.21 7.00 60.06 0.42 0.63 16
22 N -0.36 -1.28 12.07 33.43 0.40 -0.88 16
23 O 0.10 0.25 11.20 17.18 0.19 0.44 16
24 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16
25 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16
26 H 0.09 -0.47 8.14 -51.93 -0.42 -0.89 16
27 H 0.17 -0.45 8.05 -52.49 -0.42 -0.87 16
28 H 0.08 0.11 7.96 -51.93 -0.41 -0.31 16
29 H 0.06 -0.12 8.14 -51.93 -0.42 -0.55 16
30 H 0.28 2.18 8.31 -40.82 -0.34 1.84 16
31 H 0.15 -0.20 6.29 -51.93 -0.33 -0.52 16
32 H 0.09 -0.49 8.05 -51.93 -0.42 -0.90 16
33 H 0.12 -0.34 6.07 -51.93 -0.31 -0.66 16
34 H 0.08 -0.68 7.81 -51.93 -0.41 -1.09 16
35 H 0.15 -0.57 4.49 -51.93 -0.23 -0.80 16
36 H 0.11 -1.22 8.12 -51.93 -0.42 -1.64 16
37 H 0.11 -1.33 7.87 -51.93 -0.41 -1.74 16
38 H 0.11 -1.14 8.14 -51.93 -0.42 -1.56 16
39 H 0.14 -0.86 5.78 -51.93 -0.30 -1.16 16
40 H 0.09 -0.97 7.76 -51.93 -0.40 -1.37 16
41 H 0.10 -0.79 6.78 -51.93 -0.35 -1.14 16
LS Contribution 318.69 15.07 4.80 4.80
Total: 0.00 -12.68 318.69 -5.31 -17.99
By element:
Atomic # 1 Polarization: -13.09 SS G_CDS: -6.44 Total: -19.53 kcal
Atomic # 6 Polarization: -0.03 SS G_CDS: 0.30 Total: 0.27 kcal
Atomic # 7 Polarization: -5.53 SS G_CDS: 1.04 Total: -4.49 kcal
Atomic # 8 Polarization: 0.63 SS G_CDS: 0.01 Total: 0.63 kcal
Atomic # 14 Polarization: 5.35 SS G_CDS: -5.02 Total: 0.33 kcal
Total LS contribution 4.80 Total: 4.80 kcal
Total: -12.68 -5.31 -17.99 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001222977588.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.262 kcal
(2) G-P(sol) polarization free energy of solvation -12.677 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.585 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.987 kcal
(6) G-S(sol) free energy of system = (1) + (5) 123.275 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds