Wall clock time and date at job start Mon Mar 30 2020 01:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35453 * 126.77106 * 2 1 4 4 C 1.41380 * 103.98329 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.80398 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.46721 * 0.02562 * 5 4 3 7 7 C 1.42907 * 113.99979 * 174.41982 * 6 5 4 8 8 H 1.09010 * 109.46809 * 333.88660 * 7 6 5 9 9 C 1.50701 * 109.47088 * 213.89327 * 7 6 5 10 10 H 1.07999 * 119.99987 * 354.05751 * 9 7 6 11 11 C 1.37872 * 119.99946 * 174.06827 * 9 7 6 12 12 N 1.31517 * 120.00101 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00139 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47025 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47280 * 119.99721 * 13 11 9 16 16 H 1.48499 * 109.47366 * 239.99671 * 13 11 9 17 17 C 1.52990 * 109.47345 * 93.88818 * 7 6 5 18 18 N 1.46899 * 109.47157 * 58.65710 * 17 7 6 19 19 C 1.46896 * 109.47053 * 63.94729 * 18 17 7 20 20 C 1.46903 * 109.47109 * 183.94632 * 18 17 7 21 21 C 1.46899 * 109.47147 * 303.94514 * 18 17 7 22 22 N 1.30180 * 106.39571 * 0.26917 * 4 3 2 23 23 O 1.20924 * 111.60307 * 359.52789 * 22 4 3 24 24 H 1.09001 * 109.47032 * 90.00323 * 1 2 3 25 25 H 1.09000 * 109.47215 * 209.99590 * 1 2 3 26 26 H 1.08997 * 109.47356 * 329.99887 * 1 2 3 27 27 H 1.07995 * 128.00814 * 359.94839 * 3 2 1 28 28 H 1.08998 * 109.46936 * 120.00166 * 5 4 3 29 29 H 1.08993 * 109.47453 * 240.00988 * 5 4 3 30 30 H 0.96996 * 120.00183 * 180.02562 * 12 11 9 31 31 H 1.09000 * 109.47113 * 178.65983 * 17 7 6 32 32 H 1.09006 * 109.47226 * 298.65398 * 17 7 6 33 33 H 1.08999 * 109.47114 * 40.82936 * 19 18 17 34 34 H 1.08999 * 109.46869 * 160.83121 * 19 18 17 35 35 H 1.09006 * 109.46964 * 280.82779 * 19 18 17 36 36 H 1.09004 * 109.47028 * 59.99941 * 20 18 17 37 37 H 1.09001 * 109.47362 * 179.97438 * 20 18 17 38 38 H 1.08997 * 109.47132 * 299.99782 * 20 18 17 39 39 H 1.08993 * 109.47143 * 81.57358 * 21 18 17 40 40 H 1.09001 * 109.47041 * 201.57178 * 21 18 17 41 41 H 1.08999 * 109.46869 * 321.57107 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3178 1.0850 0.0000 4 6 3.6213 0.5374 0.0006 5 6 4.9210 1.3002 0.0003 6 8 4.6498 2.7032 -0.0001 7 6 5.8152 3.5206 0.1266 8 1 6.5951 2.9633 0.6457 9 6 5.4760 4.7607 0.9128 10 1 4.4526 4.9571 1.1965 11 6 6.4721 5.6446 1.2697 12 7 7.7183 5.4053 0.9245 13 14 6.0516 7.1822 2.2436 14 1 4.5900 7.2188 2.5041 15 1 6.7847 7.1662 3.5348 16 1 6.4455 8.3841 1.4656 17 6 6.3126 3.9186 -1.2644 18 7 5.2502 4.6417 -1.9760 19 6 4.9550 5.8963 -1.2713 20 6 5.6933 4.9411 -3.3442 21 6 4.0398 3.8106 -2.0242 22 7 3.4764 -0.7563 -0.0050 23 8 2.3095 -1.0736 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 2.0343 2.1271 -0.0008 28 1 5.4942 1.0415 0.8906 29 1 5.4945 1.0406 -0.8894 30 1 8.4192 6.0269 1.1759 31 1 7.1874 4.5615 -1.1671 32 1 6.5806 3.0228 -1.8246 33 1 5.8863 6.3521 -0.9353 34 1 4.4389 6.5792 -1.9460 35 1 4.3205 5.6884 -0.4096 36 1 5.9124 4.0101 -3.8671 37 1 4.9048 5.4772 -3.8724 38 1 6.5914 5.5578 -3.3084 39 1 3.4992 3.9010 -1.0821 40 1 3.4021 4.1447 -2.8426 41 1 4.3202 2.7694 -2.1838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222977588.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:53 Heat of formation + Delta-G solvation = 123.048750 kcal Electronic energy + Delta-G solvation = -22252.679807 eV Core-core repulsion = 19062.230271 eV Total energy + Delta-G solvation = -3190.449536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.165 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.90276 -42.69810 -38.78303 -35.69754 -34.89839 -34.19381 -31.37611 -29.67038 -29.34242 -28.61233 -28.30585 -27.45029 -24.37546 -23.93256 -22.69004 -21.30128 -19.13473 -18.69730 -18.29855 -18.05369 -17.69179 -17.34577 -16.67602 -16.35736 -16.03516 -15.81113 -14.97546 -14.51427 -14.31084 -14.17516 -13.93608 -13.83904 -13.51891 -13.45788 -13.25544 -13.19358 -13.08086 -12.99316 -12.85203 -12.66658 -12.60898 -12.34501 -12.12748 -12.02417 -11.41694 -11.16531 -10.69176 -10.34242 -10.19868 -8.46100 -6.47220 0.53031 1.19637 1.27329 1.33808 1.50552 1.55678 2.13282 2.26521 2.51401 2.87801 3.15291 3.23579 3.30650 3.50510 3.75028 4.06910 4.12593 4.15737 4.26426 4.27932 4.34374 4.39823 4.47985 4.50029 4.54807 4.62542 4.72259 4.76180 4.79256 4.86106 4.91563 4.92831 4.98522 5.07210 5.19125 5.30267 5.31125 5.53920 5.79406 6.18848 6.65414 7.19090 7.30497 8.58998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.033 4.033 3 C -0.216 4.216 4 C 0.013 3.987 5 C 0.142 3.858 6 O -0.370 6.370 7 C 0.200 3.800 8 H 0.032 0.968 9 C -0.526 4.526 10 H 0.081 0.919 11 C 0.053 3.947 12 N -0.898 5.898 13 Si 0.921 3.079 14 H -0.261 1.261 15 H -0.310 1.310 16 H -0.274 1.274 17 C -0.004 4.004 18 N -0.240 5.240 19 C -0.035 4.035 20 C -0.045 4.045 21 C -0.028 4.028 22 N -0.399 5.399 23 O 0.079 5.921 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.195 0.805 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.271 0.729 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.751 0.796 -14.250 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 C -0.237 4.237 4 C -0.145 4.145 5 C 0.064 3.936 6 O -0.289 6.289 7 C 0.142 3.858 8 H 0.050 0.950 9 C -0.564 4.564 10 H 0.099 0.901 11 C -0.150 4.150 12 N -0.535 5.535 13 Si 0.749 3.251 14 H -0.185 1.185 15 H -0.238 1.238 16 H -0.199 1.199 17 C -0.127 4.127 18 N 0.103 4.897 19 C -0.176 4.176 20 C -0.185 4.185 21 C -0.169 4.169 22 N -0.108 5.108 23 O 0.015 5.985 24 H 0.124 0.876 25 H 0.105 0.895 26 H 0.127 0.873 27 H 0.212 0.788 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.898 -0.068 -14.267 16.307 hybrid contribution 0.603 1.304 1.408 2.011 sum -7.294 1.236 -12.859 14.836 Atomic orbital electron populations 1.20563 0.81326 1.05806 1.05532 1.25306 0.97869 0.85417 1.01017 1.22578 0.89744 1.01991 1.09405 1.23556 0.98377 0.89859 1.02733 1.20296 0.89352 0.82188 1.01743 1.87958 1.33324 1.13534 1.94076 1.19895 0.84708 0.90056 0.91097 0.95034 1.21172 0.95215 1.04313 1.35688 0.90108 1.25049 0.94671 0.99790 0.95500 1.69799 1.00334 1.37700 1.45681 0.86073 0.79000 0.81193 0.78825 1.18513 1.23810 1.19932 1.24180 0.91984 1.00136 0.96387 1.45522 1.14708 1.15115 1.14353 1.24524 1.07081 0.84374 1.01618 1.24232 1.06398 1.07679 0.80221 1.24251 0.86714 0.97462 1.08426 1.73820 0.98100 1.16841 1.22070 1.84798 1.11141 1.34401 1.68120 0.87585 0.89487 0.87277 0.78809 0.92763 0.89695 0.91895 0.85821 0.86837 0.89365 0.86262 0.85323 0.85903 0.84439 0.87400 0.86517 0.85316 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.70 10.45 71.24 0.74 1.45 16 2 C -0.03 0.04 7.49 25.04 0.19 0.23 16 3 C -0.22 0.34 10.45 22.40 0.23 0.58 16 4 C 0.01 0.04 7.28 43.58 0.32 0.36 16 5 C 0.14 0.04 6.07 71.24 0.43 0.47 16 6 O -0.37 0.70 5.28 -148.98 -0.79 -0.09 16 7 C 0.20 0.43 2.24 29.85 0.07 0.50 16 8 H 0.03 0.32 7.66 -2.38 -0.02 0.30 16 9 C -0.53 -4.29 5.29 25.60 0.14 -4.16 16 10 H 0.08 0.70 7.03 -2.91 -0.02 0.68 16 11 C 0.05 0.71 3.65 84.65 0.31 1.02 16 12 N -0.90 -14.87 11.76 21.45 0.25 -14.62 16 13 Si 0.92 12.88 29.54 68.60 2.03 14.91 16 14 H -0.26 -3.42 7.11 99.48 0.71 -2.71 16 15 H -0.31 -6.38 7.11 99.48 0.71 -5.68 16 16 H -0.27 -3.71 7.11 99.48 0.71 -3.00 16 17 C 0.00 0.03 4.06 86.30 0.35 0.38 16 18 N -0.24 4.02 0.05 ******* -0.07 3.95 16 19 C -0.03 0.42 6.89 127.69 0.88 1.30 16 20 C -0.04 1.06 7.85 127.69 1.00 2.06 16 21 C -0.03 0.52 7.00 127.69 0.89 1.41 16 22 N -0.40 -3.22 12.07 -49.54 -0.60 -3.82 16 23 O 0.08 0.45 11.20 71.66 0.80 1.25 16 24 H 0.11 -1.33 8.14 -2.39 -0.02 -1.35 16 25 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 26 H 0.11 -1.34 8.14 -2.39 -0.02 -1.36 16 27 H 0.19 -1.32 8.05 -2.91 -0.02 -1.34 16 28 H 0.05 0.26 7.96 -2.39 -0.02 0.24 16 29 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.27 4.99 8.31 -92.71 -0.77 4.22 16 31 H 0.12 -0.23 6.29 -2.39 -0.02 -0.24 16 32 H 0.11 -1.42 8.05 -2.38 -0.02 -1.44 16 33 H 0.09 -0.46 6.07 -2.39 -0.01 -0.47 16 34 H 0.12 -2.37 7.81 -2.39 -0.02 -2.39 16 35 H 0.13 -0.98 4.49 -2.38 -0.01 -0.99 16 36 H 0.12 -3.22 8.12 -2.39 -0.02 -3.23 16 37 H 0.14 -3.95 7.87 -2.39 -0.02 -3.97 16 38 H 0.11 -2.37 8.14 -2.39 -0.02 -2.39 16 39 H 0.12 -1.66 5.78 -2.39 -0.01 -1.67 16 40 H 0.13 -3.29 7.76 -2.39 -0.02 -3.31 16 41 H 0.10 -1.79 6.78 -2.39 -0.02 -1.81 16 Total: 0.00 -34.11 318.69 8.19 -25.92 By element: Atomic # 1 Polarization: -34.11 SS G_CDS: 1.01 Total: -33.10 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 5.55 Total: 5.60 kcal Atomic # 7 Polarization: -14.08 SS G_CDS: -0.41 Total: -14.49 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.02 Total: 1.16 kcal Atomic # 14 Polarization: 12.88 SS G_CDS: 2.03 Total: 14.91 kcal Total: -34.11 8.19 -25.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222977588.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.970 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds