Wall clock time and date at job start Mon Mar 30 2020 00:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39551 * 120.14372 * 141.50963 * 3 2 1 5 5 C 1.37954 * 119.86023 * 179.97438 * 4 3 2 6 6 C 1.38373 * 120.13660 * 359.72906 * 5 4 3 7 7 C 1.38318 * 120.28778 * 0.54750 * 6 5 4 8 8 C 1.50701 * 119.93224 * 179.72721 * 7 6 5 9 9 N 1.46896 * 109.47043 * 269.73033 * 8 7 6 10 10 C 1.46850 * 111.00472 * 66.04154 * 9 8 7 11 11 C 1.53036 * 109.52384 * 185.84130 * 10 9 8 12 12 C 1.53114 * 109.27799 * 300.81924 * 11 10 9 13 13 C 1.53120 * 109.16161 * 57.65854 * 12 11 10 14 14 H 1.08998 * 109.50493 * 62.28140 * 13 12 11 15 15 C 1.50699 * 109.50204 * 182.40736 * 13 12 11 16 16 H 1.08000 * 120.00193 * 120.00336 * 15 13 12 17 17 C 1.37879 * 119.99808 * 299.99151 * 15 13 12 18 18 N 1.31517 * 119.99723 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 120.00081 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46981 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46760 * 120.00106 * 19 17 15 22 22 H 1.48494 * 109.47157 * 240.00681 * 19 17 15 23 23 C 1.46846 * 110.99998 * 190.25565 * 9 8 7 24 24 C 1.37999 * 120.14111 * 359.45009 * 7 6 5 25 25 H 4.52089 * 14.02127 * 0.02562 * 4 2 1 26 26 H 1.08006 * 120.07041 * 0.02562 * 4 3 2 27 27 H 1.07995 * 119.93263 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.85265 * 180.27168 * 6 5 4 29 29 H 1.08999 * 109.47078 * 149.72280 * 8 7 6 30 30 H 1.09003 * 109.46796 * 29.72647 * 8 7 6 31 31 H 1.08995 * 109.45831 * 65.81919 * 10 9 8 32 32 H 1.08998 * 109.45719 * 305.85769 * 10 9 8 33 33 H 1.09004 * 109.50109 * 60.76189 * 11 10 9 34 34 H 1.08997 * 109.49831 * 180.87683 * 11 10 9 35 35 H 1.08995 * 109.52025 * 177.56309 * 12 11 10 36 36 H 1.09002 * 109.52325 * 297.75085 * 12 11 10 37 37 H 0.97006 * 119.99407 * 179.97438 * 18 17 15 38 38 H 1.08993 * 109.46639 * 54.13954 * 23 9 8 39 39 H 1.09010 * 109.45973 * 294.17120 * 23 9 8 40 40 H 1.07997 * 120.07257 * 180.24791 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3064 0.9455 -0.7511 5 6 4.6859 0.9411 -0.7464 6 6 5.3751 0.0060 0.0053 7 6 4.6869 -0.9368 0.7475 8 6 5.4457 -1.9555 1.5585 9 7 5.6932 -3.1486 0.7381 10 6 6.6002 -2.8428 -0.3755 11 6 6.7197 -4.0653 -1.2884 12 6 7.2558 -5.2497 -0.4795 13 6 6.3189 -5.5167 0.7018 14 1 5.3316 -5.7891 0.3290 15 6 6.8708 -6.6432 1.5370 16 1 7.1169 -6.4754 2.5751 17 6 7.0615 -7.8881 0.9757 18 7 6.7621 -8.0922 -0.2885 19 14 7.7449 -9.2847 2.0111 20 1 7.9977 -8.7996 3.3917 21 1 6.7632 -10.3982 2.0501 22 1 9.0166 -9.7665 1.4147 23 6 6.2110 -4.2521 1.5570 24 6 3.3070 -0.9431 0.7514 25 1 -1.0501 -0.0003 0.0009 26 1 2.7695 1.6792 -1.3342 27 1 5.2291 1.6716 -1.3276 28 1 6.4551 0.0095 0.0091 29 1 4.8593 -2.2321 2.4347 30 1 6.3972 -1.5301 1.8776 31 1 7.5837 -2.5853 0.0174 32 1 6.2052 -2.0015 -0.9450 33 1 5.7386 -4.3149 -1.6925 34 1 7.4051 -3.8431 -2.1062 35 1 7.3016 -6.1339 -1.1152 36 1 8.2532 -5.0151 -0.1077 37 1 6.8966 -8.9680 -0.6834 38 1 5.5335 -4.4344 2.3911 39 1 7.1966 -3.9881 1.9409 40 1 2.7708 -1.6772 1.3344 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231660030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:49 Heat of formation + Delta-G solvation = 69.907898 kcal Electronic energy + Delta-G solvation = -19748.166712 eV Core-core repulsion = 16914.491908 eV Total energy + Delta-G solvation = -2833.674805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62441 -37.90633 -34.45176 -33.47360 -32.18564 -30.62403 -30.28824 -29.61420 -25.86026 -24.93530 -23.35263 -22.37767 -21.65767 -20.79955 -18.63289 -18.40168 -16.50692 -16.31851 -15.44597 -15.35553 -15.04895 -14.54957 -14.04805 -13.65059 -13.57279 -13.21503 -13.04639 -12.75596 -12.40146 -12.15446 -11.83234 -11.54771 -11.32686 -11.16822 -11.03326 -10.95351 -10.64838 -10.64237 -10.46630 -10.06954 -9.82065 -9.45673 -9.10264 -8.76538 -8.68109 -8.50436 -8.28565 -7.65248 -5.95961 -4.02233 0.92464 1.37870 2.66526 2.95453 3.30745 3.38840 3.42335 3.93682 4.18113 4.43118 4.67050 4.85855 4.90594 5.08812 5.28752 5.33930 5.34668 5.53856 5.67886 5.72174 5.84239 5.88342 6.03209 6.06586 6.10941 6.27533 6.39102 6.40429 6.43206 6.52496 6.63979 6.74878 6.77316 6.92368 6.98362 7.24185 7.41268 7.44669 7.67437 7.76483 7.82164 8.10280 8.19641 8.49557 9.02099 9.62081 11.09943 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028376 B = 0.003928 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.521745 B = 7126.718858 C = 7481.319799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.140 4.140 3 C 0.001 3.999 4 C -0.101 4.101 5 C -0.122 4.122 6 C -0.103 4.103 7 C -0.064 4.064 8 C 0.089 3.911 9 N -0.533 5.533 10 C 0.060 3.940 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.055 3.945 14 H 0.034 0.966 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.068 3.932 24 C -0.072 4.072 25 H 0.223 0.777 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.022 0.978 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.029 0.971 37 H 0.259 0.741 38 H 0.059 0.941 39 H 0.019 0.981 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 17.170 -0.484 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C 0.001 3.999 4 C -0.120 4.120 5 C -0.140 4.140 6 C -0.122 4.122 7 C -0.065 4.065 8 C -0.039 4.039 9 N -0.257 5.257 10 C -0.068 4.068 11 C -0.155 4.155 12 C -0.148 4.148 13 C 0.036 3.964 14 H 0.052 0.948 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.059 4.059 24 C -0.090 4.090 25 H 0.240 0.760 26 H 0.140 0.860 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.985 16.860 -0.799 17.908 hybrid contribution 0.986 -0.555 0.784 1.376 sum -4.999 16.305 -0.016 17.054 Atomic orbital electron populations 1.24837 0.95735 0.99948 0.99977 1.20112 0.92088 1.00885 1.00931 1.15945 0.86471 0.97665 0.99854 1.21107 0.94176 0.98064 0.98615 1.20995 0.93805 0.99325 0.99831 1.21216 1.00006 0.94679 0.96278 1.19792 0.93384 0.95586 0.97711 1.21057 0.97846 0.89946 0.95011 1.62026 1.47672 1.05188 1.10811 1.22118 0.93207 0.98403 0.93095 1.21669 1.00822 0.95875 0.97120 1.21652 0.97468 0.96688 0.99035 1.18671 0.96286 0.89413 0.92047 0.94763 1.21186 1.42742 0.94654 0.96705 0.92792 1.24938 0.95509 0.98477 0.94934 1.69910 1.48509 1.22591 1.11656 0.86577 0.78659 0.82430 0.80555 1.19865 1.21049 1.21114 1.22339 0.96147 0.91547 0.95841 1.21092 0.93489 0.96684 0.97781 0.76034 0.86008 0.85717 0.85972 0.90124 0.94406 0.96007 0.91976 0.92154 0.93602 0.89119 0.95202 0.93134 0.92213 0.96223 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 19.25 29.55 0.57 -1.40 16 2 C -0.14 -1.80 13.24 -38.84 -0.51 -2.31 16 3 C 0.00 0.01 5.72 -107.01 -0.61 -0.60 16 4 C -0.10 -1.18 9.75 -39.20 -0.38 -1.56 16 5 C -0.12 -1.33 10.03 -39.64 -0.40 -1.73 16 6 C -0.10 -1.26 7.88 -39.50 -0.31 -1.57 16 7 C -0.06 -0.89 4.88 -104.68 -0.51 -1.40 16 8 C 0.09 1.34 5.12 -4.98 -0.03 1.31 16 9 N -0.53 -9.83 4.65 -236.11 -1.10 -10.93 16 10 C 0.06 1.06 5.17 -3.83 -0.02 1.04 16 11 C -0.12 -2.33 6.09 -26.65 -0.16 -2.50 16 12 C -0.11 -2.63 5.02 -26.61 -0.13 -2.76 16 13 C 0.05 1.37 2.27 -91.69 -0.21 1.16 16 14 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.51 -14.09 8.56 -34.44 -0.29 -14.39 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -25.42 11.35 55.43 0.63 -24.80 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.07 1.43 4.68 -3.83 -0.02 1.42 16 24 C -0.07 -1.00 9.40 -39.19 -0.37 -1.37 16 25 H 0.22 1.39 7.80 -54.09 -0.42 0.97 16 26 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 27 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.12 1.34 7.96 -52.49 -0.42 0.93 16 29 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 30 H 0.04 0.54 8.06 -51.93 -0.42 0.12 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 1.00 5.77 -51.93 -0.30 0.70 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 39 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 40 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -29.43 329.99 -10.05 -39.48 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.05 Total: 0.05 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -3.48 Total: -25.02 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.47 Total: -35.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.43 -10.05 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231660030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.387 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds