Wall clock time and date at job start Mon Mar 30 2020 00:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39551 * 120.14372 * 141.50963 * 3 2 1 5 5 C 1.37954 * 119.86023 * 179.97438 * 4 3 2 6 6 C 1.38373 * 120.13660 * 359.72906 * 5 4 3 7 7 C 1.38318 * 120.28778 * 0.54750 * 6 5 4 8 8 C 1.50701 * 119.93224 * 179.72721 * 7 6 5 9 9 N 1.46896 * 109.47043 * 269.73033 * 8 7 6 10 10 C 1.46850 * 111.00472 * 66.04154 * 9 8 7 11 11 C 1.53036 * 109.52384 * 185.84130 * 10 9 8 12 12 C 1.53114 * 109.27799 * 300.81924 * 11 10 9 13 13 C 1.53120 * 109.16161 * 57.65854 * 12 11 10 14 14 H 1.08998 * 109.50493 * 62.28140 * 13 12 11 15 15 C 1.50699 * 109.50204 * 182.40736 * 13 12 11 16 16 H 1.08000 * 120.00193 * 120.00336 * 15 13 12 17 17 C 1.37879 * 119.99808 * 299.99151 * 15 13 12 18 18 N 1.31517 * 119.99723 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 120.00081 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46981 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46760 * 120.00106 * 19 17 15 22 22 H 1.48494 * 109.47157 * 240.00681 * 19 17 15 23 23 C 1.46846 * 110.99998 * 190.25565 * 9 8 7 24 24 C 1.37999 * 120.14111 * 359.45009 * 7 6 5 25 25 H 4.52089 * 14.02127 * 0.02562 * 4 2 1 26 26 H 1.08006 * 120.07041 * 0.02562 * 4 3 2 27 27 H 1.07995 * 119.93263 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.85265 * 180.27168 * 6 5 4 29 29 H 1.08999 * 109.47078 * 149.72280 * 8 7 6 30 30 H 1.09003 * 109.46796 * 29.72647 * 8 7 6 31 31 H 1.08995 * 109.45831 * 65.81919 * 10 9 8 32 32 H 1.08998 * 109.45719 * 305.85769 * 10 9 8 33 33 H 1.09004 * 109.50109 * 60.76189 * 11 10 9 34 34 H 1.08997 * 109.49831 * 180.87683 * 11 10 9 35 35 H 1.08995 * 109.52025 * 177.56309 * 12 11 10 36 36 H 1.09002 * 109.52325 * 297.75085 * 12 11 10 37 37 H 0.97006 * 119.99407 * 179.97438 * 18 17 15 38 38 H 1.08993 * 109.46639 * 54.13954 * 23 9 8 39 39 H 1.09010 * 109.45973 * 294.17120 * 23 9 8 40 40 H 1.07997 * 120.07257 * 180.24791 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3064 0.9455 -0.7511 5 6 4.6859 0.9411 -0.7464 6 6 5.3751 0.0060 0.0053 7 6 4.6869 -0.9368 0.7475 8 6 5.4457 -1.9555 1.5585 9 7 5.6932 -3.1486 0.7381 10 6 6.6002 -2.8428 -0.3755 11 6 6.7197 -4.0653 -1.2884 12 6 7.2558 -5.2497 -0.4795 13 6 6.3189 -5.5167 0.7018 14 1 5.3316 -5.7891 0.3290 15 6 6.8708 -6.6432 1.5370 16 1 7.1169 -6.4754 2.5751 17 6 7.0615 -7.8881 0.9757 18 7 6.7621 -8.0922 -0.2885 19 14 7.7449 -9.2847 2.0111 20 1 7.9977 -8.7996 3.3917 21 1 6.7632 -10.3982 2.0501 22 1 9.0166 -9.7665 1.4147 23 6 6.2110 -4.2521 1.5570 24 6 3.3070 -0.9431 0.7514 25 1 -1.0501 -0.0003 0.0009 26 1 2.7695 1.6792 -1.3342 27 1 5.2291 1.6716 -1.3276 28 1 6.4551 0.0095 0.0091 29 1 4.8593 -2.2321 2.4347 30 1 6.3972 -1.5301 1.8776 31 1 7.5837 -2.5853 0.0174 32 1 6.2052 -2.0015 -0.9450 33 1 5.7386 -4.3149 -1.6925 34 1 7.4051 -3.8431 -2.1062 35 1 7.3016 -6.1339 -1.1152 36 1 8.2532 -5.0151 -0.1077 37 1 6.8966 -8.9680 -0.6834 38 1 5.5335 -4.4344 2.3911 39 1 7.1966 -3.9881 1.9409 40 1 2.7708 -1.6772 1.3344 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231660030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:49 Heat of formation + Delta-G solvation = 54.826148 kcal Electronic energy + Delta-G solvation = -19748.820706 eV Core-core repulsion = 16914.491908 eV Total energy + Delta-G solvation = -2834.328798 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70073 -39.35981 -35.93450 -34.69065 -33.76579 -31.94654 -31.61347 -30.98117 -27.13243 -26.91809 -24.30427 -23.80649 -23.25218 -22.07111 -20.34865 -19.36855 -18.40456 -17.33235 -16.86526 -16.43916 -16.36337 -16.18036 -15.46730 -15.02427 -14.85442 -14.56233 -14.41151 -14.21716 -13.90926 -13.62203 -13.37979 -12.88326 -12.82750 -12.62557 -12.53578 -12.27929 -12.10776 -12.04299 -11.76290 -11.71674 -11.44019 -11.33430 -10.86867 -10.65864 -10.37754 -9.78209 -9.43960 -9.09029 -8.07524 -6.21953 0.00867 0.43031 1.40609 1.42234 1.53630 1.79859 2.05314 2.43315 2.94178 3.19458 3.33058 3.38771 3.82193 3.99380 4.16452 4.22753 4.23817 4.34269 4.38832 4.44965 4.60671 4.65495 4.71095 4.75667 4.85057 4.90078 4.98409 5.08638 5.10871 5.18604 5.20482 5.38761 5.48942 5.51789 5.52640 5.64080 5.66719 5.96201 6.01928 6.13066 6.21772 6.34224 6.46290 6.60098 6.91162 7.46121 8.97273 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028376 B = 0.003928 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.521745 B = 7126.718858 C = 7481.319799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.197 4.197 3 C -0.013 4.013 4 C -0.104 4.104 5 C -0.114 4.114 6 C -0.108 4.108 7 C -0.077 4.077 8 C 0.093 3.907 9 N -0.546 5.546 10 C 0.066 3.934 11 C -0.111 4.111 12 C -0.103 4.103 13 C 0.052 3.948 14 H -0.007 1.007 15 C -0.535 4.535 16 H 0.053 0.947 17 C 0.013 3.987 18 N -0.916 5.916 19 Si 0.955 3.045 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.280 1.280 23 C 0.082 3.918 24 C -0.092 4.092 25 H 0.260 0.740 26 H 0.142 0.858 27 H 0.157 0.843 28 H 0.138 0.862 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.260 0.740 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 19.139 -0.561 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.197 4.197 3 C -0.013 4.013 4 C -0.122 4.122 5 C -0.132 4.132 6 C -0.127 4.127 7 C -0.077 4.077 8 C -0.034 4.034 9 N -0.270 5.270 10 C -0.061 4.061 11 C -0.149 4.149 12 C -0.141 4.141 13 C 0.033 3.967 14 H 0.011 0.989 15 C -0.574 4.574 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.781 3.219 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.045 4.045 24 C -0.111 4.111 25 H 0.276 0.724 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.156 0.844 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.907 18.848 -0.870 19.771 hybrid contribution 0.840 -1.122 0.776 1.602 sum -5.067 17.725 -0.094 18.435 Atomic orbital electron populations 1.25790 0.96553 0.97551 0.97533 1.20545 0.92870 1.03125 1.03164 1.16179 0.87213 0.97891 0.99986 1.21428 0.94771 0.97833 0.98134 1.21356 0.93620 0.99135 0.99040 1.21427 1.00849 0.94434 0.95950 1.19700 0.93214 0.96139 0.98678 1.21053 0.98697 0.88846 0.94815 1.61919 1.47688 1.06162 1.11256 1.22076 0.93767 0.97705 0.92597 1.21586 1.00194 0.95353 0.97756 1.21451 0.97081 0.97108 0.98457 1.18593 0.94128 0.91020 0.92943 0.98872 1.21556 1.42922 0.95899 0.96975 0.92902 1.25737 0.95811 1.00969 0.96041 1.70058 1.49274 1.23116 1.13124 0.85551 0.77966 0.79196 0.79201 1.19067 1.20732 1.20579 1.21992 0.96252 0.91055 0.95214 1.21107 0.93874 0.97331 0.98745 0.72365 0.84049 0.82514 0.84407 0.90136 0.93017 0.95062 0.89607 0.93744 0.91196 0.92486 0.95620 0.93114 0.92446 0.96169 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 19.25 74.32 1.43 -1.56 16 2 C -0.20 -4.90 13.24 30.01 0.40 -4.50 16 3 C -0.01 -0.33 5.72 -21.41 -0.12 -0.45 16 4 C -0.10 -2.19 9.75 22.52 0.22 -1.97 16 5 C -0.11 -2.14 10.03 22.23 0.22 -1.92 16 6 C -0.11 -2.37 7.88 22.32 0.18 -2.19 16 7 C -0.08 -2.04 4.88 -19.90 -0.10 -2.14 16 8 C 0.09 2.71 5.12 85.56 0.44 3.15 16 9 N -0.55 -19.96 4.65 -900.93 -4.19 -24.15 16 10 C 0.07 2.24 5.17 86.32 0.45 2.69 16 11 C -0.11 -4.40 6.09 30.64 0.19 -4.21 16 12 C -0.10 -5.02 5.02 30.67 0.15 -4.86 16 13 C 0.05 2.70 2.27 -11.49 -0.03 2.68 16 14 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 15 C -0.53 -30.07 8.56 25.60 0.22 -29.85 16 16 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 17 C 0.01 0.73 5.30 84.65 0.45 1.18 16 18 N -0.92 -54.04 11.35 21.45 0.24 -53.80 16 19 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 C 0.08 3.52 4.68 86.33 0.40 3.92 16 24 C -0.09 -2.58 9.40 22.52 0.21 -2.37 16 25 H 0.26 2.37 7.80 -4.41 -0.03 2.33 16 26 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 27 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 28 H 0.14 2.55 7.96 -2.91 -0.02 2.53 16 29 H 0.08 2.30 7.92 -2.39 -0.02 2.28 16 30 H 0.05 1.37 8.06 -2.39 -0.02 1.35 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 2.54 5.77 -2.39 -0.01 2.53 16 33 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.06 3.16 6.15 -2.39 -0.01 3.14 16 36 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 38 H 0.06 2.43 8.01 -2.39 -0.02 2.41 16 39 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -65.58 329.99 3.79 -61.78 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.00 Total: 12.41 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 4.71 Total: -42.42 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -3.94 Total: -77.94 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -65.58 3.79 -61.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231660030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.610 kcal (2) G-P(sol) polarization free energy of solvation -65.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds