Wall clock time and date at job start Mon Mar 30 2020 01:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46814 * 2 1 4 4 C 1.35279 * 126.70741 * 89.99856 * 3 2 1 5 5 C 1.41925 * 103.96010 * 180.02562 * 4 3 2 6 6 O 1.35712 * 126.87844 * 179.97438 * 5 4 3 7 7 C 1.42903 * 116.99817 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.47229 * 30.00089 * 7 6 5 9 9 C 1.50697 * 109.46793 * 269.99824 * 7 6 5 10 10 H 1.07995 * 120.00044 * 125.53239 * 9 7 6 11 11 C 1.37883 * 120.00132 * 305.52654 * 9 7 6 12 12 N 1.31511 * 120.00314 * 197.35576 * 11 9 7 13 13 Si 1.86806 * 119.99930 * 17.62769 * 11 9 7 14 14 H 1.48493 * 109.46949 * 179.72492 * 13 11 9 15 15 H 1.48492 * 109.46926 * 299.72755 * 13 11 9 16 16 H 1.48504 * 109.46642 * 59.72441 * 13 11 9 17 17 C 1.53002 * 109.46983 * 149.99945 * 7 6 5 18 18 N 1.46900 * 109.46962 * 292.16451 * 17 7 6 19 19 C 1.46900 * 109.47025 * 62.42563 * 18 17 7 20 20 C 1.46905 * 109.46859 * 182.42392 * 18 17 7 21 21 C 1.46897 * 109.47293 * 302.42426 * 18 17 7 22 22 N 1.30618 * 106.24463 * 0.24765 * 5 4 3 23 23 O 1.20916 * 111.49543 * 359.56923 * 22 5 4 24 24 H 1.08995 * 109.47502 * 59.99880 * 1 2 3 25 25 H 1.09008 * 109.47048 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47384 * 299.99524 * 1 2 3 27 27 H 1.08995 * 109.47384 * 240.00476 * 2 1 3 28 28 H 1.08995 * 109.47001 * 119.99951 * 2 1 3 29 29 H 1.08004 * 128.01655 * 0.02562 * 4 3 2 30 30 H 0.97003 * 119.99619 * 355.21297 * 12 11 9 31 31 H 1.09005 * 109.46867 * 52.16264 * 17 7 6 32 32 H 1.09003 * 109.46945 * 172.16174 * 17 7 6 33 33 H 1.09002 * 109.47248 * 46.13211 * 19 18 17 34 34 H 1.09006 * 109.47002 * 166.12633 * 19 18 17 35 35 H 1.08990 * 109.47348 * 286.12850 * 19 18 17 36 36 H 1.09000 * 109.46732 * 59.99994 * 20 18 17 37 37 H 1.09000 * 109.47075 * 180.02562 * 20 18 17 38 38 H 1.09003 * 109.47335 * 300.00276 * 20 18 17 39 39 H 1.09002 * 109.47161 * 60.00016 * 21 18 17 40 40 H 1.09000 * 109.47132 * 180.02562 * 21 18 17 41 41 H 1.09007 * 109.46895 * 300.00299 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3018 2.1832 1.0845 5 6 2.7374 3.4175 0.5358 6 8 3.1269 4.5216 1.2220 7 6 3.5270 5.6567 0.4515 8 1 2.9845 5.6637 -0.4938 9 6 5.0076 5.5831 0.1804 10 1 5.3742 5.6371 -0.8340 11 6 5.8943 5.4470 1.2275 12 7 7.1683 5.7209 1.0502 13 14 5.2872 4.8664 2.8960 14 1 6.4297 4.7979 3.8420 15 1 4.2730 5.8199 3.4129 16 1 4.6762 3.5198 2.7592 17 6 3.2138 6.9368 1.2288 18 7 1.7579 7.1041 1.3303 19 6 1.1871 5.9796 2.0837 20 6 1.4570 8.3625 2.0259 21 6 1.1737 7.1376 -0.0171 22 7 2.6827 3.2799 -0.7620 23 8 2.2988 2.1768 -1.0749 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.2072 1.9148 2.1264 30 1 7.4964 5.9513 0.1670 31 1 3.6423 6.8686 2.2288 32 1 3.6425 7.7926 0.7073 33 1 1.7842 5.8009 2.9780 34 1 0.1633 6.2178 2.3721 35 1 1.1903 5.0856 1.4602 36 1 1.8806 9.1969 1.4669 37 1 0.3768 8.4865 2.1017 38 1 1.8906 8.3377 3.0257 39 1 1.3970 6.2039 -0.5332 40 1 0.0935 7.2622 0.0583 41 1 1.5973 7.9721 -0.5761 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234657033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:58 Heat of formation + Delta-G solvation = 122.076356 kcal Electronic energy + Delta-G solvation = -22495.694423 eV Core-core repulsion = 19305.202721 eV Total energy + Delta-G solvation = -3190.491702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.165 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.83593 -43.00943 -39.68580 -35.78580 -35.47143 -33.78611 -32.04362 -30.99791 -29.77337 -29.60378 -27.82553 -25.20685 -24.58626 -24.28855 -23.22730 -21.92695 -19.78098 -19.09465 -18.52047 -18.23887 -18.13035 -17.73267 -17.38866 -16.20741 -15.80311 -15.46014 -15.36864 -15.12368 -14.80637 -14.44909 -14.24590 -14.14996 -13.73084 -13.55006 -13.46741 -13.37360 -13.20963 -13.17232 -12.82996 -12.68978 -12.51148 -12.37380 -12.20956 -11.79342 -11.62130 -11.27057 -10.79155 -10.43137 -10.05999 -9.01433 -6.86627 0.51102 0.77160 1.08166 1.26068 1.49929 1.63240 1.96717 2.26658 2.33897 2.62828 2.82621 2.89767 3.06029 3.31660 3.59706 3.74762 3.91744 4.01017 4.05943 4.12041 4.18060 4.24370 4.25274 4.34250 4.35927 4.44293 4.46080 4.54387 4.60495 4.69744 4.73165 4.75194 4.79283 5.01011 5.06897 5.16527 5.30529 5.39011 5.71456 5.96009 6.31899 7.08750 7.35909 8.32915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C -0.002 4.002 4 C -0.250 4.250 5 C 0.215 3.785 6 O -0.298 6.298 7 C 0.170 3.830 8 H 0.074 0.926 9 C -0.630 4.630 10 H 0.020 0.980 11 C -0.001 4.001 12 N -0.912 5.912 13 Si 1.091 2.909 14 H -0.325 1.325 15 H -0.201 1.201 16 H -0.270 1.270 17 C 0.005 3.995 18 N -0.262 5.262 19 C -0.050 4.050 20 C -0.047 4.047 21 C -0.050 4.050 22 N -0.435 5.435 23 O 0.077 5.923 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.197 0.803 30 H 0.260 0.740 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.153 0.847 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.551 5.451 5.290 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.065 4.065 4 C -0.272 4.272 5 C 0.018 3.982 6 O -0.207 6.207 7 C 0.115 3.885 8 H 0.092 0.908 9 C -0.668 4.668 10 H 0.038 0.962 11 C -0.205 4.205 12 N -0.544 5.544 13 Si 0.916 3.084 14 H -0.255 1.255 15 H -0.125 1.125 16 H -0.196 1.196 17 C -0.116 4.116 18 N 0.081 4.919 19 C -0.191 4.191 20 C -0.187 4.187 21 C -0.191 4.191 22 N -0.164 5.164 23 O 0.019 5.981 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.133 0.867 29 H 0.214 0.786 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.134 0.866 34 H 0.172 0.828 35 H 0.114 0.886 36 H 0.144 0.856 37 H 0.167 0.833 38 H 0.140 0.860 39 H 0.104 0.896 40 H 0.171 0.829 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.793 6.079 6.053 24.354 hybrid contribution 1.039 -0.228 -1.737 2.037 sum -21.755 5.851 4.317 22.937 Atomic orbital electron populations 1.21763 0.92165 1.03743 1.02624 1.20382 0.97528 0.84399 1.06122 1.25013 0.98678 0.97742 0.85095 1.22191 1.11481 0.90951 1.02530 1.22061 0.97476 0.90767 0.87894 1.86113 1.79434 1.20187 1.34995 1.20607 0.94886 0.80895 0.92118 0.90797 1.22105 0.92268 1.58339 0.94038 0.96154 1.27416 0.93484 0.91144 1.08441 1.71005 1.17925 1.40218 1.25287 0.83525 0.75409 0.79521 0.69989 1.25532 1.12505 1.19641 1.24564 0.78465 1.00891 1.07668 1.46059 1.13432 1.16598 1.15857 1.24405 1.04775 0.89776 1.00173 1.24375 1.09080 0.83493 1.01739 1.24262 1.05061 1.07992 0.81814 1.74151 1.24809 1.01750 1.15692 1.84790 1.63067 1.17005 1.33209 0.92761 0.89879 0.91525 0.88738 0.86658 0.78612 0.93056 0.85284 0.83223 0.86623 0.82822 0.88580 0.85604 0.83350 0.85961 0.89603 0.82893 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.16 9.89 71.98 0.71 1.88 16 2 C -0.05 0.25 6.50 29.85 0.19 0.44 16 3 C 0.00 0.00 6.73 25.00 0.17 0.16 16 4 C -0.25 -0.61 11.10 22.50 0.25 -0.36 16 5 C 0.22 1.61 7.06 85.79 0.61 2.22 16 6 O -0.30 -1.38 3.32 -90.33 -0.30 -1.68 16 7 C 0.17 0.84 1.76 29.85 0.05 0.89 16 8 H 0.07 0.30 5.02 -2.39 -0.01 0.29 16 9 C -0.63 -14.26 9.30 25.60 0.24 -14.03 16 10 H 0.02 0.66 8.06 -2.91 -0.02 0.64 16 11 C 0.00 -0.02 5.34 84.66 0.45 0.43 16 12 N -0.91 -32.70 13.70 21.45 0.29 -32.40 16 13 Si 1.09 17.23 24.93 68.60 1.71 18.94 16 14 H -0.33 -7.45 7.11 99.48 0.71 -6.74 16 15 H -0.20 -0.22 5.43 99.48 0.54 0.32 16 16 H -0.27 -4.16 6.83 99.48 0.68 -3.48 16 17 C 0.01 -0.05 3.47 86.30 0.30 0.25 16 18 N -0.26 5.99 0.05 ******* -0.07 5.92 16 19 C -0.05 1.12 7.03 127.69 0.90 2.02 16 20 C -0.05 1.45 7.98 127.69 1.02 2.47 16 21 C -0.05 1.20 7.58 127.69 0.97 2.16 16 22 N -0.43 -5.00 11.09 -172.60 -1.91 -6.91 16 23 O 0.08 0.67 11.19 71.24 0.80 1.47 16 24 H 0.05 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H 0.08 -0.82 8.14 -2.38 -0.02 -0.84 16 26 H 0.07 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H 0.12 -0.97 8.14 -2.39 -0.02 -0.99 16 29 H 0.20 -0.65 8.06 -2.91 -0.02 -0.67 16 30 H 0.26 9.83 8.73 -92.71 -0.81 9.02 16 31 H 0.13 -1.05 4.63 -2.38 -0.01 -1.06 16 32 H 0.15 -1.62 8.11 -2.39 -0.02 -1.64 16 33 H 0.12 -2.40 7.82 -2.39 -0.02 -2.42 16 34 H 0.15 -4.76 7.91 -2.38 -0.02 -4.78 16 35 H 0.10 -1.52 5.25 -2.39 -0.01 -1.53 16 36 H 0.13 -3.94 8.14 -2.39 -0.02 -3.96 16 37 H 0.15 -5.39 8.04 -2.39 -0.02 -5.41 16 38 H 0.12 -3.72 8.14 -2.39 -0.02 -3.74 16 39 H 0.09 -1.35 5.83 -2.39 -0.01 -1.37 16 40 H 0.15 -4.75 8.14 -2.39 -0.02 -4.77 16 41 H 0.13 -3.27 8.14 -2.38 -0.02 -3.29 16 Total: 0.00 -61.22 318.11 7.15 -54.07 By element: Atomic # 1 Polarization: -38.72 SS G_CDS: 0.77 Total: -37.95 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.86 Total: -1.46 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: -1.69 Total: -33.39 kcal Atomic # 8 Polarization: -0.71 SS G_CDS: 0.50 Total: -0.21 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: 1.71 Total: 18.94 kcal Total: -61.22 7.15 -54.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234657033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.146 kcal (2) G-P(sol) polarization free energy of solvation -61.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds