Wall clock time and date at job start Mon Mar 30 2020 01:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08992 * 109.50251 * 187.07248 * 3 2 1 5 5 C 1.53121 * 109.50121 * 307.14684 * 3 2 1 6 6 C 1.53123 * 109.15945 * 177.59281 * 5 3 2 7 7 C 1.53030 * 109.28035 * 302.34684 * 6 5 3 8 8 N 1.46852 * 109.52427 * 59.17952 * 7 6 5 9 9 C 1.46898 * 111.00190 * 174.15848 * 8 7 6 10 10 C 1.50701 * 109.46997 * 284.02378 * 9 8 7 11 11 C 1.37638 * 120.13043 * 102.44349 * 10 9 8 12 12 C 1.38607 * 120.24984 * 180.02562 * 11 10 9 13 13 C 1.38658 * 120.50371 * 359.97438 * 12 11 10 14 14 C 1.37601 * 120.24496 * 0.02562 * 13 12 11 15 15 C 1.40702 * 120.12517 * 282.16382 * 10 9 8 16 16 C 1.41393 * 120.24449 * 0.02562 * 15 10 9 17 17 H 1.07995 * 120.00262 * 330.91640 * 16 15 10 18 18 C 1.39947 * 119.99803 * 150.92336 * 16 15 10 19 19 N 1.30818 * 119.99782 * 164.34124 * 18 16 15 20 20 Si 1.86795 * 120.00121 * 344.33418 * 18 16 15 21 21 H 1.48500 * 109.47035 * 94.04216 * 20 18 16 22 22 H 1.48500 * 109.47480 * 214.03777 * 20 18 16 23 23 H 1.48495 * 109.47323 * 334.04151 * 20 18 16 24 24 C 1.46851 * 111.19670 * 298.25869 * 8 7 6 25 25 H 4.18786 * 15.03078 * 359.97438 * 4 2 1 26 26 H 1.08995 * 109.52679 * 297.50423 * 5 3 2 27 27 H 1.09005 * 109.52383 * 57.69286 * 5 3 2 28 28 H 1.09003 * 109.49924 * 62.29296 * 6 5 3 29 29 H 1.08995 * 109.49986 * 182.36404 * 6 5 3 30 30 H 1.08999 * 109.46114 * 179.18918 * 7 6 5 31 31 H 1.08998 * 109.46357 * 299.17521 * 7 6 5 32 32 H 1.08998 * 109.47176 * 44.02399 * 9 8 7 33 33 H 1.09003 * 109.47217 * 164.02179 * 9 8 7 34 34 H 1.08005 * 119.86986 * 359.97438 * 11 10 9 35 35 H 1.08004 * 119.74913 * 179.97438 * 12 11 10 36 36 H 1.07992 * 119.87711 * 180.02562 * 13 12 11 37 37 H 1.07998 * 120.12413 * 179.97438 * 14 13 12 38 38 H 0.97005 * 120.00255 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.45865 * 301.72238 * 24 8 7 40 40 H 1.08999 * 109.45850 * 181.75771 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 1.0204 0.1265 5 6 3.1575 -0.8707 1.1505 6 6 4.6875 -0.9132 1.1069 7 6 5.1395 -1.4513 -0.2525 8 7 4.6255 -0.5831 -1.3196 9 6 5.1537 -0.9890 -2.6288 10 6 6.5854 -0.5359 -2.7553 11 6 7.6124 -1.4374 -2.5912 12 6 8.9302 -1.0232 -2.7064 13 6 9.2297 0.3009 -2.9883 14 6 8.2190 1.2195 -3.1563 15 6 6.8773 0.8092 -3.0474 16 6 5.8304 1.7431 -3.2233 17 1 4.8719 1.4157 -3.5980 18 6 6.0363 3.0919 -2.9120 19 7 5.2014 3.9990 -3.3497 20 14 7.5031 3.5969 -1.8715 21 1 8.6326 3.9747 -2.7586 22 1 7.1316 4.7570 -1.0221 23 1 7.9113 2.4608 -1.0069 24 6 3.1571 -0.5639 -1.3274 25 1 -1.0500 -0.0010 -0.0006 26 1 2.8318 -0.4476 2.1007 27 1 2.7620 -1.8811 1.0460 28 1 5.0837 0.0921 1.2504 29 1 5.0561 -1.5659 1.8981 30 1 6.2287 -1.4692 -0.2921 31 1 4.7543 -2.4617 -0.3895 32 1 5.1067 -2.0742 -2.7190 33 1 4.5570 -0.5326 -3.4187 34 1 7.3906 -2.4712 -2.3710 35 1 9.7298 -1.7374 -2.5757 36 1 10.2599 0.6125 -3.0763 37 1 8.4545 2.2505 -3.3753 38 1 5.3443 4.9340 -3.1343 39 1 2.7815 -1.5786 -1.4593 40 1 2.8065 0.0625 -2.1476 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235527088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:34 Heat of formation + Delta-G solvation = 67.031219 kcal Electronic energy + Delta-G solvation = -20552.261627 eV Core-core repulsion = 17718.462080 eV Total energy + Delta-G solvation = -2833.799547 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.02045 -37.63571 -34.34961 -33.50698 -32.45047 -30.38188 -30.23446 -29.57156 -25.94671 -24.67501 -23.26498 -22.53342 -21.30107 -19.83560 -19.36856 -17.85741 -17.25086 -15.77577 -15.44644 -14.80801 -14.62320 -14.38308 -14.01599 -13.75651 -13.52403 -13.35162 -13.05795 -12.58274 -12.24397 -12.03187 -11.75231 -11.53368 -11.37893 -11.08277 -10.84793 -10.72094 -10.62161 -10.58592 -10.36786 -10.18948 -9.85069 -9.75237 -9.61644 -9.35690 -9.04099 -7.67543 -7.51584 -7.49955 -6.84328 -4.34479 2.61514 2.74200 2.96767 3.00881 3.18676 3.28989 3.41570 4.07553 4.28878 4.59402 4.76124 5.09742 5.13863 5.26155 5.51553 5.56390 5.62851 5.82095 5.82813 5.89219 5.92944 6.02484 6.10540 6.12274 6.19382 6.25328 6.30167 6.32363 6.43018 6.47543 6.60281 6.66189 6.75400 7.01481 7.26079 7.47448 7.59967 7.69330 7.76438 7.82999 7.83530 7.98742 8.22813 8.46187 8.76753 8.91495 10.17786 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.007345 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.994356 B = 3811.093718 C = 4737.402177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.163 4.163 3 C 0.018 3.982 4 H 0.104 0.896 5 C -0.107 4.107 6 C -0.116 4.116 7 C 0.057 3.943 8 N -0.516 5.516 9 C 0.127 3.873 10 C -0.175 4.175 11 C -0.075 4.075 12 C -0.250 4.250 13 C -0.077 4.077 14 C -0.244 4.244 15 C 0.110 3.890 16 C -0.418 4.418 17 H 0.090 0.910 18 C 0.085 3.915 19 N -0.813 5.813 20 Si 0.913 3.087 21 H -0.276 1.276 22 H -0.296 1.296 23 H -0.243 1.243 24 C 0.072 3.928 25 H 0.214 0.786 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.021 0.979 32 H 0.020 0.980 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.283 0.717 39 H 0.025 0.975 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 -7.195 6.630 10.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.164 4.164 3 C 0.000 4.000 4 H 0.122 0.878 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.071 4.071 8 N -0.240 5.240 9 C 0.001 3.999 10 C -0.177 4.177 11 C -0.094 4.094 12 C -0.270 4.270 13 C -0.096 4.096 14 C -0.263 4.263 15 C 0.107 3.893 16 C -0.446 4.446 17 H 0.108 0.892 18 C -0.133 4.133 19 N -0.437 5.437 20 Si 0.742 3.258 21 H -0.203 1.203 22 H -0.224 1.224 23 H -0.166 1.166 24 C -0.057 4.057 25 H 0.231 0.769 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.453 -6.471 6.676 9.918 hybrid contribution 0.130 -0.327 0.242 0.427 sum -3.323 -6.797 6.917 10.252 Atomic orbital electron populations 1.24780 0.95784 1.02324 1.01523 1.23189 0.94317 0.99249 0.99618 1.18391 0.83510 1.01971 0.96134 0.87794 1.21563 0.96241 0.99264 0.97362 1.21590 0.94578 1.02509 0.96739 1.22073 1.00922 0.92987 0.91128 1.61751 1.05471 1.52430 1.04309 1.20605 0.94276 0.95280 0.89750 1.19388 0.92561 0.94682 1.11050 1.20472 0.92963 0.96822 0.99148 1.20286 0.95199 0.95593 1.15903 1.20565 0.96982 0.93730 0.98300 1.21011 0.93609 0.98263 1.13391 1.17487 0.91818 0.92099 0.87932 1.19370 0.99330 0.90408 1.35493 0.89193 1.26104 0.96877 0.96158 0.94172 1.69677 1.35825 1.02628 1.35608 0.86318 0.80523 0.78333 0.80675 1.20283 1.22434 1.16599 1.21958 0.88686 0.98611 0.96405 0.76886 0.91878 0.92290 0.90659 0.91762 0.90125 0.96040 0.96219 0.90766 0.89381 0.89280 0.89249 0.88482 0.90714 0.95694 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.95 19.25 29.55 0.57 -2.38 16 2 C -0.16 -2.43 12.56 -37.12 -0.47 -2.90 16 3 C 0.02 0.28 2.73 -93.33 -0.25 0.03 16 4 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 5 C -0.11 -1.42 5.24 -26.61 -0.14 -1.56 16 6 C -0.12 -1.63 6.09 -26.65 -0.16 -1.79 16 7 C 0.06 0.92 5.29 -3.83 -0.02 0.90 16 8 N -0.52 -9.53 4.57 -236.12 -1.08 -10.60 16 9 C 0.13 2.49 4.52 -4.98 -0.02 2.46 16 10 C -0.17 -3.87 4.93 -103.91 -0.51 -4.39 16 11 C -0.08 -1.55 8.92 -39.66 -0.35 -1.90 16 12 C -0.25 -5.20 10.05 -39.29 -0.39 -5.60 16 13 C -0.08 -1.70 10.02 -39.66 -0.40 -2.09 16 14 C -0.24 -5.90 7.07 -38.87 -0.27 -6.18 16 15 C 0.11 2.73 5.16 -106.82 -0.55 2.17 16 16 C -0.42 -10.93 8.96 -37.74 -0.34 -11.27 16 17 H 0.09 2.46 6.77 -52.49 -0.36 2.11 16 18 C 0.08 2.21 5.44 -17.34 -0.09 2.12 16 19 N -0.81 -21.62 13.93 55.55 0.77 -20.84 16 20 Si 0.91 21.33 24.42 -169.99 -4.15 17.18 16 21 H -0.28 -6.31 6.66 56.52 0.38 -5.93 16 22 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.24 -5.85 6.73 56.52 0.38 -5.47 16 24 C 0.07 1.20 4.66 -3.83 -0.02 1.18 16 25 H 0.21 1.94 7.80 -54.09 -0.42 1.52 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.41 6.91 -51.93 -0.36 1.05 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.35 7.83 -51.93 -0.41 -0.06 16 33 H 0.07 1.52 6.51 -51.93 -0.34 1.18 16 34 H 0.09 1.59 8.01 -52.48 -0.42 1.17 16 35 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.10 2.37 4.36 -52.49 -0.23 2.14 16 38 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 1.43 7.93 -51.93 -0.41 1.02 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -27.24 321.87 -8.97 -36.20 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.93 Total: 4.41 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: -3.43 Total: -31.20 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: -0.31 Total: -31.45 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.15 Total: 17.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.24 -8.97 -36.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235527088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.235 kcal (2) G-P(sol) polarization free energy of solvation -27.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds