Wall clock time and date at job start Mon Mar 30 2020 01:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08992 * 109.50251 * 187.07248 * 3 2 1 5 5 C 1.53121 * 109.50121 * 307.14684 * 3 2 1 6 6 C 1.53123 * 109.15945 * 177.59281 * 5 3 2 7 7 C 1.53030 * 109.28035 * 302.34684 * 6 5 3 8 8 N 1.46852 * 109.52427 * 59.17952 * 7 6 5 9 9 C 1.46898 * 111.00190 * 174.15848 * 8 7 6 10 10 C 1.50701 * 109.46997 * 284.02378 * 9 8 7 11 11 C 1.37638 * 120.13043 * 102.44349 * 10 9 8 12 12 C 1.38607 * 120.24984 * 180.02562 * 11 10 9 13 13 C 1.38658 * 120.50371 * 359.97438 * 12 11 10 14 14 C 1.37601 * 120.24496 * 0.02562 * 13 12 11 15 15 C 1.40702 * 120.12517 * 282.16382 * 10 9 8 16 16 C 1.41393 * 120.24449 * 0.02562 * 15 10 9 17 17 H 1.07995 * 120.00262 * 330.91640 * 16 15 10 18 18 C 1.39947 * 119.99803 * 150.92336 * 16 15 10 19 19 N 1.30818 * 119.99782 * 164.34124 * 18 16 15 20 20 Si 1.86795 * 120.00121 * 344.33418 * 18 16 15 21 21 H 1.48500 * 109.47035 * 94.04216 * 20 18 16 22 22 H 1.48500 * 109.47480 * 214.03777 * 20 18 16 23 23 H 1.48495 * 109.47323 * 334.04151 * 20 18 16 24 24 C 1.46851 * 111.19670 * 298.25869 * 8 7 6 25 25 H 4.18786 * 15.03078 * 359.97438 * 4 2 1 26 26 H 1.08995 * 109.52679 * 297.50423 * 5 3 2 27 27 H 1.09005 * 109.52383 * 57.69286 * 5 3 2 28 28 H 1.09003 * 109.49924 * 62.29296 * 6 5 3 29 29 H 1.08995 * 109.49986 * 182.36404 * 6 5 3 30 30 H 1.08999 * 109.46114 * 179.18918 * 7 6 5 31 31 H 1.08998 * 109.46357 * 299.17521 * 7 6 5 32 32 H 1.08998 * 109.47176 * 44.02399 * 9 8 7 33 33 H 1.09003 * 109.47217 * 164.02179 * 9 8 7 34 34 H 1.08005 * 119.86986 * 359.97438 * 11 10 9 35 35 H 1.08004 * 119.74913 * 179.97438 * 12 11 10 36 36 H 1.07992 * 119.87711 * 180.02562 * 13 12 11 37 37 H 1.07998 * 120.12413 * 179.97438 * 14 13 12 38 38 H 0.97005 * 120.00255 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.45865 * 301.72238 * 24 8 7 40 40 H 1.08999 * 109.45850 * 181.75771 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 1.0204 0.1265 5 6 3.1575 -0.8707 1.1505 6 6 4.6875 -0.9132 1.1069 7 6 5.1395 -1.4513 -0.2525 8 7 4.6255 -0.5831 -1.3196 9 6 5.1537 -0.9890 -2.6288 10 6 6.5854 -0.5359 -2.7553 11 6 7.6124 -1.4374 -2.5912 12 6 8.9302 -1.0232 -2.7064 13 6 9.2297 0.3009 -2.9883 14 6 8.2190 1.2195 -3.1563 15 6 6.8773 0.8092 -3.0474 16 6 5.8304 1.7431 -3.2233 17 1 4.8719 1.4157 -3.5980 18 6 6.0363 3.0919 -2.9120 19 7 5.2014 3.9990 -3.3497 20 14 7.5031 3.5969 -1.8715 21 1 8.6326 3.9747 -2.7586 22 1 7.1316 4.7570 -1.0221 23 1 7.9113 2.4608 -1.0069 24 6 3.1571 -0.5639 -1.3274 25 1 -1.0500 -0.0010 -0.0006 26 1 2.8318 -0.4476 2.1007 27 1 2.7620 -1.8811 1.0460 28 1 5.0837 0.0921 1.2504 29 1 5.0561 -1.5659 1.8981 30 1 6.2287 -1.4692 -0.2921 31 1 4.7543 -2.4617 -0.3895 32 1 5.1067 -2.0742 -2.7190 33 1 4.5570 -0.5326 -3.4187 34 1 7.3906 -2.4712 -2.3710 35 1 9.7298 -1.7374 -2.5757 36 1 10.2599 0.6125 -3.0763 37 1 8.4545 2.2505 -3.3753 38 1 5.3443 4.9340 -3.1343 39 1 2.7815 -1.5786 -1.4593 40 1 2.8065 0.0625 -2.1476 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235527088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:34 Heat of formation + Delta-G solvation = 52.652747 kcal Electronic energy + Delta-G solvation = -20552.885124 eV Core-core repulsion = 17718.462080 eV Total energy + Delta-G solvation = -2834.423044 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44702 -39.25066 -35.66852 -35.40424 -33.67318 -32.17735 -31.76486 -30.86202 -27.58412 -26.37256 -24.52984 -23.91143 -23.09621 -21.34034 -20.78727 -19.17725 -18.92734 -17.53018 -16.77119 -16.34506 -16.24496 -15.77758 -15.52892 -15.25406 -15.01340 -14.72879 -14.47525 -14.31572 -13.79569 -13.51893 -13.38580 -13.09597 -12.77236 -12.62719 -12.53009 -12.48065 -12.01901 -11.96931 -11.70777 -11.58047 -11.48353 -11.23499 -10.96074 -10.89949 -10.87861 -9.35483 -9.30320 -8.99072 -8.78556 -6.31358 0.84941 0.93710 1.28365 1.42563 1.51820 1.86641 1.91936 2.17160 2.72707 3.05674 3.53400 3.72462 3.92497 3.95874 4.11776 4.22132 4.29498 4.33439 4.43766 4.53318 4.54839 4.64725 4.69900 4.74332 4.83265 4.92646 5.00976 5.02003 5.07013 5.10023 5.18301 5.21775 5.28366 5.42703 5.45147 5.71862 5.92072 5.99304 6.10649 6.30744 6.36460 6.45741 6.54440 6.70950 6.89952 6.98437 8.29400 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.007345 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.994356 B = 3811.093718 C = 4737.402177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.214 4.214 3 C 0.021 3.979 4 H 0.076 0.924 5 C -0.097 4.097 6 C -0.112 4.112 7 C 0.057 3.943 8 N -0.539 5.539 9 C 0.132 3.868 10 C -0.175 4.175 11 C -0.078 4.078 12 C -0.231 4.231 13 C -0.088 4.088 14 C -0.262 4.262 15 C 0.087 3.913 16 C -0.440 4.440 17 H 0.059 0.941 18 C 0.048 3.952 19 N -0.857 5.857 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.289 1.289 23 H -0.254 1.254 24 C 0.079 3.921 25 H 0.251 0.749 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.287 0.713 39 H 0.038 0.962 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 -9.822 8.296 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.215 4.215 3 C 0.003 3.997 4 H 0.094 0.906 5 C -0.135 4.135 6 C -0.150 4.150 7 C -0.070 4.070 8 N -0.263 5.263 9 C 0.005 3.995 10 C -0.177 4.177 11 C -0.096 4.096 12 C -0.250 4.250 13 C -0.106 4.106 14 C -0.282 4.282 15 C 0.085 3.915 16 C -0.470 4.470 17 H 0.077 0.923 18 C -0.165 4.165 19 N -0.484 5.484 20 Si 0.790 3.210 21 H -0.194 1.194 22 H -0.217 1.217 23 H -0.178 1.178 24 C -0.049 4.049 25 H 0.268 0.732 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.586 -9.104 8.343 12.616 hybrid contribution -0.095 0.251 -0.299 0.402 sum -2.681 -8.853 8.044 12.258 Atomic orbital electron populations 1.25688 0.96606 0.99856 0.99168 1.23327 0.94765 1.01526 1.01836 1.18236 0.84462 1.00844 0.96169 0.90567 1.21513 0.95574 0.99461 0.96937 1.21583 0.95078 1.01925 0.96422 1.22121 1.00103 0.93560 0.91232 1.61645 1.06514 1.53825 1.04304 1.20486 0.92725 0.96181 0.90064 1.19765 0.94466 0.93990 1.09499 1.20852 0.92529 0.98170 0.98098 1.20815 0.96281 0.95650 1.12296 1.20935 0.97889 0.93981 0.97841 1.21133 0.94034 0.98657 1.14345 1.17692 0.91873 0.93191 0.88791 1.19252 0.98749 0.91313 1.37663 0.92325 1.26649 0.98788 0.96110 0.94933 1.69718 1.37731 1.03047 1.37939 0.85551 0.78488 0.77634 0.79372 1.19443 1.21668 1.17823 1.21849 0.87792 0.98750 0.96523 0.73229 0.90493 0.90989 0.92666 0.88795 0.91358 0.94210 0.93932 0.93103 0.85973 0.85621 0.86396 0.89366 0.90267 0.94348 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.73 19.25 74.32 1.43 -3.29 16 2 C -0.21 -6.28 12.56 31.13 0.39 -5.89 16 3 C 0.02 0.67 2.73 -12.55 -0.03 0.64 16 4 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 5 C -0.10 -2.44 5.24 30.68 0.16 -2.28 16 6 C -0.11 -2.96 6.09 30.65 0.19 -2.77 16 7 C 0.06 1.75 5.29 86.32 0.46 2.21 16 8 N -0.54 -20.13 4.57 -900.94 -4.12 -24.24 16 9 C 0.13 5.21 4.52 85.56 0.39 5.59 16 10 C -0.18 -7.67 4.93 -19.40 -0.10 -7.77 16 11 C -0.08 -2.96 8.92 22.22 0.20 -2.76 16 12 C -0.23 -8.66 10.05 22.46 0.23 -8.43 16 13 C -0.09 -3.64 10.02 22.22 0.22 -3.41 16 14 C -0.26 -12.63 7.07 22.73 0.16 -12.47 16 15 C 0.09 4.42 5.16 -21.29 -0.11 4.31 16 16 C -0.44 -24.43 8.96 23.46 0.21 -24.21 16 17 H 0.06 3.51 6.77 -2.91 -0.02 3.49 16 18 C 0.05 2.64 5.44 85.26 0.46 3.10 16 19 N -0.86 -48.30 13.93 21.83 0.30 -47.99 16 20 Si 0.96 45.34 24.42 68.60 1.68 47.01 16 21 H -0.27 -12.09 6.66 99.48 0.66 -11.43 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.25 -12.26 6.73 99.48 0.67 -11.59 16 24 C 0.08 2.71 4.66 86.32 0.40 3.11 16 25 H 0.25 3.66 7.80 -4.42 -0.03 3.63 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 2.24 6.91 -2.39 -0.02 2.22 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 1.45 7.83 -2.39 -0.02 1.43 16 33 H 0.05 2.21 6.51 -2.39 -0.02 2.20 16 34 H 0.12 3.84 8.01 -2.91 -0.02 3.81 16 35 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 36 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.09 4.34 4.36 -2.91 -0.01 4.33 16 38 H 0.29 14.81 8.30 -92.70 -0.77 14.04 16 39 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 Total: -1.00 -61.43 321.87 3.44 -57.99 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.93 Total: 21.57 kcal Atomic # 6 Polarization: -58.98 SS G_CDS: 4.66 Total: -54.33 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -3.81 Total: -72.24 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.68 Total: 47.01 kcal Total: -61.43 3.44 -57.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235527088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.638 kcal (2) G-P(sol) polarization free energy of solvation -61.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds