Wall clock time and date at job start Mon Mar 30 2020 01:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 N 1.46506 * 109.46656 * 119.99642 * 2 1 3 5 5 C 1.36429 * 125.50264 * 299.69006 * 4 2 1 6 6 C 1.34612 * 108.51816 * 179.88857 * 5 4 2 7 7 C 1.41824 * 107.33778 * 0.37215 * 6 5 4 8 8 C 1.48396 * 126.46176 * 179.80325 * 7 6 5 9 9 C 1.39366 * 120.12377 * 179.67842 * 8 7 6 10 10 C 1.37991 * 119.87958 * 179.72125 * 9 8 7 11 11 C 1.38349 * 120.11742 * 0.53981 * 10 9 8 12 12 C 1.38301 * 120.24634 * 359.75754 * 11 10 9 13 13 C 1.50699 * 119.93724 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47210 * 269.98107 * 13 12 11 15 15 H 1.07999 * 119.99823 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99710 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99756 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00468 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47263 * 89.99774 * 18 16 14 20 20 H 1.48497 * 109.47514 * 209.99873 * 18 16 14 21 21 H 1.48500 * 109.46859 * 329.99945 * 18 16 14 22 22 C 1.38040 * 120.12258 * 359.96323 * 12 11 10 23 23 C 1.36040 * 107.08138 * 359.76984 * 7 6 5 24 24 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 25 25 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 26 26 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47040 * 239.99530 * 2 1 3 28 28 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 29 29 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 30 30 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 31 31 H 1.07999 * 125.73779 * 0.02562 * 5 4 2 32 32 H 1.08000 * 126.33049 * 180.10165 * 6 5 4 33 33 H 1.08002 * 120.05621 * 0.02562 * 9 8 7 34 34 H 1.07999 * 119.94119 * 180.25741 * 10 9 8 35 35 H 1.08005 * 119.87739 * 179.74710 * 11 10 9 36 36 H 1.08995 * 109.47666 * 29.98093 * 13 12 11 37 37 H 1.09006 * 109.47086 * 149.98537 * 13 12 11 38 38 H 0.96992 * 120.00093 * 179.97438 * 17 16 14 39 39 H 1.07993 * 120.06535 * 179.97438 * 22 12 11 40 40 H 1.07995 * 125.96462 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7636 -0.3201 2.4844 6 6 2.3742 -1.1917 3.3086 7 6 3.0453 -2.1417 2.4971 8 6 3.8568 -3.2901 2.9712 9 6 4.4559 -4.1499 2.0525 10 6 5.2142 -5.2128 2.4989 11 6 5.3710 -5.4323 3.8558 12 6 4.7737 -4.5858 4.7720 13 6 4.9487 -4.8317 6.2485 14 6 3.8463 -5.7332 6.7418 15 1 3.0945 -6.0925 6.0547 16 6 3.7977 -6.0992 8.0702 17 7 2.8354 -6.8855 8.5008 18 14 5.0976 -5.4771 9.2587 19 1 4.6503 -4.1919 9.8533 20 1 5.3014 -6.4771 10.3373 21 1 6.3746 -5.2676 8.5302 22 6 4.0177 -3.5161 4.3365 23 6 2.8043 -1.8022 1.2020 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.1700 0.5284 2.7911 32 1 2.3597 -1.1691 4.3883 33 1 4.3309 -3.9817 0.9930 34 1 5.6823 -5.8773 1.7878 35 1 5.9620 -6.2678 4.2010 36 1 5.9134 -5.3069 6.4260 37 1 4.9077 -3.8821 6.7823 38 1 2.8013 -7.1433 9.4352 39 1 3.5514 -2.8559 5.0528 40 1 3.1718 -2.3237 0.3306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239068844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:04 Heat of formation + Delta-G solvation = 56.958634 kcal Electronic energy + Delta-G solvation = -19241.927218 eV Core-core repulsion = 16407.690891 eV Total energy + Delta-G solvation = -2834.236327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.19018 -38.41306 -35.61501 -33.38578 -31.64638 -31.01712 -29.33780 -28.06398 -27.69526 -27.05722 -23.17704 -22.41418 -22.20362 -20.61689 -19.15181 -18.76740 -17.33567 -16.69553 -15.70677 -14.98021 -14.90377 -14.41483 -14.29599 -13.96232 -13.65431 -13.35950 -13.06653 -12.79060 -12.63695 -12.32108 -12.22289 -12.19880 -12.01401 -11.86873 -11.59650 -11.52566 -11.34946 -11.00442 -10.60121 -10.21512 -10.00711 -9.80008 -9.31583 -9.03584 -8.51876 -8.18624 -7.81338 -7.20446 -6.00917 -3.99272 1.73801 2.21616 2.50301 2.88107 3.33541 3.40815 3.44546 3.45961 4.24564 4.47407 4.56116 4.65807 4.72779 4.91404 5.09941 5.19561 5.24620 5.29983 5.30625 5.35689 5.50448 5.54092 5.66917 5.68966 5.74107 5.78422 6.03132 6.21057 6.22202 6.28141 6.56305 6.69484 6.81757 7.02955 7.09207 7.12392 7.15255 7.32049 7.41180 7.52289 7.72193 7.73585 7.83661 8.57502 9.05573 9.59649 11.12240 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026360 B = 0.003795 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.962816 B = 7376.281367 C = 7906.239068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.129 3.871 3 C -0.163 4.163 4 N -0.445 5.445 5 C -0.018 4.018 6 C -0.180 4.180 7 C -0.115 4.115 8 C -0.010 4.010 9 C -0.145 4.145 10 C -0.120 4.120 11 C -0.129 4.129 12 C -0.027 4.027 13 C 0.014 3.986 14 C -0.510 4.510 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.264 1.264 22 C -0.112 4.112 23 C -0.008 4.008 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.156 0.844 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.027 0.973 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.118 0.882 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 15.325 -18.411 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 C -0.220 4.220 4 N -0.121 5.121 5 C -0.146 4.146 6 C -0.205 4.205 7 C -0.122 4.122 8 C -0.011 4.011 9 C -0.164 4.164 10 C -0.138 4.138 11 C -0.147 4.147 12 C -0.027 4.027 13 C -0.023 4.023 14 C -0.547 4.547 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.131 4.131 23 C -0.138 4.138 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.378 15.432 -18.563 24.180 hybrid contribution 0.470 0.150 0.748 0.896 sum -0.908 15.582 -17.816 23.686 Atomic orbital electron populations 1.22181 0.93665 1.03260 1.02998 1.21369 0.95249 0.93864 0.86888 1.22176 1.02178 0.94680 1.03009 1.44102 1.39773 1.22573 1.05683 1.21527 1.07431 1.03137 0.82553 1.20992 1.03210 0.97103 0.99171 1.18358 1.03782 0.97984 0.92063 1.18137 0.96524 0.93345 0.93067 1.20798 1.00882 0.96677 0.98005 1.20893 0.99625 0.97718 0.95585 1.21046 1.01479 0.99661 0.92525 1.20172 0.92974 0.92267 0.97304 1.18810 0.98099 0.97305 0.88099 1.20960 1.10496 1.28505 0.94788 0.90806 1.25003 0.95528 0.94710 0.98092 1.69908 1.32525 1.35780 1.15828 0.86806 0.82962 0.78799 0.80964 1.20182 1.21333 1.18909 1.21005 0.99512 0.98501 0.94048 1.21758 1.01471 0.92169 0.98353 0.91670 0.90906 0.91644 0.88643 0.90910 0.91679 0.91736 0.82665 0.84417 0.87482 0.87109 0.86623 0.95472 0.95909 0.92692 0.86429 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.24 37.16 0.34 -0.74 16 2 C 0.13 0.98 3.54 -67.93 -0.24 0.74 16 3 C -0.16 -1.03 9.23 37.16 0.34 -0.68 16 4 N -0.44 -5.04 2.61 -109.79 -0.29 -5.33 16 5 C -0.02 -0.23 10.31 -16.79 -0.17 -0.40 16 6 C -0.18 -2.76 10.25 -39.50 -0.40 -3.16 16 7 C -0.12 -1.88 6.07 -105.13 -0.64 -2.52 16 8 C -0.01 -0.19 5.88 -104.89 -0.62 -0.80 16 9 C -0.15 -2.45 9.57 -39.25 -0.38 -2.83 16 10 C -0.12 -2.08 10.03 -39.63 -0.40 -2.48 16 11 C -0.13 -2.60 9.69 -39.52 -0.38 -2.98 16 12 C -0.03 -0.61 5.06 -104.67 -0.53 -1.14 16 13 C 0.01 0.35 4.17 -29.03 -0.12 0.23 16 14 C -0.51 -14.91 9.65 -34.44 -0.33 -15.24 16 15 H 0.07 2.37 7.98 -52.49 -0.42 1.95 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 18 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 22 C -0.11 -2.34 9.24 -39.25 -0.36 -2.70 16 23 C -0.01 -0.10 10.79 -16.43 -0.18 -0.28 16 24 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.62 8.06 -51.93 -0.42 0.20 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.43 7.91 -51.93 -0.41 0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.14 2.09 7.41 -52.49 -0.39 1.70 16 33 H 0.11 1.48 7.03 -52.49 -0.37 1.11 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.12 2.23 8.06 -52.48 -0.42 1.80 16 36 H 0.03 0.67 7.14 -51.93 -0.37 0.29 16 37 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.12 2.40 7.10 -52.49 -0.37 2.03 16 40 H 0.16 1.74 7.28 -52.49 -0.38 1.36 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -33.00 333.37 -9.38 -42.38 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.06 Total: 1.22 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: -4.16 Total: -33.07 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.49 Total: -32.74 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.00 -9.38 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239068844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.343 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds