Wall clock time and date at job start Mon Mar 30 2020 01:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 N 1.46506 * 109.46656 * 119.99642 * 2 1 3 5 5 C 1.36429 * 125.50264 * 299.69006 * 4 2 1 6 6 C 1.34612 * 108.51816 * 179.88857 * 5 4 2 7 7 C 1.41824 * 107.33778 * 0.37215 * 6 5 4 8 8 C 1.48396 * 126.46176 * 179.80325 * 7 6 5 9 9 C 1.39366 * 120.12377 * 179.67842 * 8 7 6 10 10 C 1.37991 * 119.87958 * 179.72125 * 9 8 7 11 11 C 1.38349 * 120.11742 * 0.53981 * 10 9 8 12 12 C 1.38301 * 120.24634 * 359.75754 * 11 10 9 13 13 C 1.50699 * 119.93724 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47210 * 269.98107 * 13 12 11 15 15 H 1.07999 * 119.99823 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99710 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99756 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00468 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47263 * 89.99774 * 18 16 14 20 20 H 1.48497 * 109.47514 * 209.99873 * 18 16 14 21 21 H 1.48500 * 109.46859 * 329.99945 * 18 16 14 22 22 C 1.38040 * 120.12258 * 359.96323 * 12 11 10 23 23 C 1.36040 * 107.08138 * 359.76984 * 7 6 5 24 24 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 25 25 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 26 26 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47040 * 239.99530 * 2 1 3 28 28 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 29 29 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 30 30 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 31 31 H 1.07999 * 125.73779 * 0.02562 * 5 4 2 32 32 H 1.08000 * 126.33049 * 180.10165 * 6 5 4 33 33 H 1.08002 * 120.05621 * 0.02562 * 9 8 7 34 34 H 1.07999 * 119.94119 * 180.25741 * 10 9 8 35 35 H 1.08005 * 119.87739 * 179.74710 * 11 10 9 36 36 H 1.08995 * 109.47666 * 29.98093 * 13 12 11 37 37 H 1.09006 * 109.47086 * 149.98537 * 13 12 11 38 38 H 0.96992 * 120.00093 * 179.97438 * 17 16 14 39 39 H 1.07993 * 120.06535 * 179.97438 * 22 12 11 40 40 H 1.07995 * 125.96462 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7636 -0.3201 2.4844 6 6 2.3742 -1.1917 3.3086 7 6 3.0453 -2.1417 2.4971 8 6 3.8568 -3.2901 2.9712 9 6 4.4559 -4.1499 2.0525 10 6 5.2142 -5.2128 2.4989 11 6 5.3710 -5.4323 3.8558 12 6 4.7737 -4.5858 4.7720 13 6 4.9487 -4.8317 6.2485 14 6 3.8463 -5.7332 6.7418 15 1 3.0945 -6.0925 6.0547 16 6 3.7977 -6.0992 8.0702 17 7 2.8354 -6.8855 8.5008 18 14 5.0976 -5.4771 9.2587 19 1 4.6503 -4.1919 9.8533 20 1 5.3014 -6.4771 10.3373 21 1 6.3746 -5.2676 8.5302 22 6 4.0177 -3.5161 4.3365 23 6 2.8043 -1.8022 1.2020 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.1700 0.5284 2.7911 32 1 2.3597 -1.1691 4.3883 33 1 4.3309 -3.9817 0.9930 34 1 5.6823 -5.8773 1.7878 35 1 5.9620 -6.2678 4.2010 36 1 5.9134 -5.3069 6.4260 37 1 4.9077 -3.8821 6.7823 38 1 2.8013 -7.1433 9.4352 39 1 3.5514 -2.8559 5.0528 40 1 3.1718 -2.3237 0.3306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239068844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:04 Heat of formation + Delta-G solvation = 40.002962 kcal Electronic energy + Delta-G solvation = -19242.662471 eV Core-core repulsion = 16407.690891 eV Total energy + Delta-G solvation = -2834.971580 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.18720 -39.87137 -36.40893 -35.36441 -33.43424 -32.39789 -30.37801 -29.64611 -28.52006 -28.17417 -24.93521 -23.68149 -23.34007 -22.00574 -20.14116 -20.07041 -18.97613 -18.26400 -17.05215 -16.39235 -15.91708 -15.77154 -15.71306 -15.19240 -14.74511 -14.59716 -14.41060 -14.10758 -13.78119 -13.62156 -13.43098 -13.32593 -13.13500 -13.02307 -12.92965 -12.70154 -12.43268 -12.23677 -11.96437 -11.94295 -11.71970 -11.66902 -11.37829 -10.79649 -10.32318 -9.40620 -9.24402 -8.46073 -8.30629 -6.35711 0.36443 0.71554 1.35135 1.36988 1.45937 1.49693 2.04230 2.19030 2.34870 3.03082 3.25412 3.68148 4.01945 4.02289 4.09437 4.14331 4.18379 4.27298 4.36576 4.44481 4.59718 4.67529 4.72716 4.75779 4.83824 4.84527 4.88916 5.01306 5.04229 5.14494 5.25229 5.25762 5.27968 5.41660 5.42775 5.57447 5.70275 5.85529 5.98728 6.11623 6.23935 6.31387 6.35532 6.56659 6.70077 7.27359 8.86262 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026360 B = 0.003795 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.962816 B = 7376.281367 C = 7906.239068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.122 3.878 3 C -0.159 4.159 4 N -0.436 5.436 5 C -0.004 4.004 6 C -0.219 4.219 7 C -0.160 4.160 8 C -0.008 4.008 9 C -0.140 4.140 10 C -0.110 4.110 11 C -0.151 4.151 12 C -0.060 4.060 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.024 0.976 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.246 1.246 22 C -0.139 4.139 23 C 0.010 3.990 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.183 0.817 32 H 0.121 0.879 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.116 0.884 36 H 0.032 0.968 37 H 0.024 0.976 38 H 0.268 0.732 39 H 0.102 0.898 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 17.225 -21.281 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.021 3.979 3 C -0.217 4.217 4 N -0.112 5.112 5 C -0.134 4.134 6 C -0.243 4.243 7 C -0.166 4.166 8 C -0.009 4.009 9 C -0.158 4.158 10 C -0.128 4.128 11 C -0.169 4.169 12 C -0.060 4.060 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.043 0.957 16 C -0.190 4.190 17 N -0.590 5.590 18 Si 0.776 3.224 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.170 1.170 22 C -0.157 4.157 23 C -0.122 4.122 24 H 0.079 0.921 25 H 0.117 0.883 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.200 0.800 32 H 0.139 0.861 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.134 0.866 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.623 17.355 -21.464 27.610 hybrid contribution 0.080 -0.373 1.453 1.502 sum -0.542 16.982 -20.011 26.251 Atomic orbital electron populations 1.22177 0.92775 1.02734 1.04132 1.21761 0.95920 0.94504 0.85708 1.22163 1.01563 0.93794 1.04130 1.44457 1.38357 1.21818 1.06521 1.21806 1.06116 1.02728 0.82709 1.21075 1.05334 0.98817 0.99046 1.18432 1.05810 0.98536 0.93830 1.18430 0.96052 0.94179 0.92196 1.21257 0.99344 0.95505 0.99723 1.21286 0.98691 0.97992 0.94794 1.21179 1.02223 0.99632 0.93871 1.20074 0.95481 0.94217 0.96205 1.18645 0.96408 0.96104 0.90399 1.21152 1.10802 1.29299 0.94488 0.95738 1.26010 0.98128 0.94723 1.00152 1.70064 1.34870 1.37410 1.16656 0.85617 0.80172 0.78499 0.78159 1.19042 1.20427 1.16977 1.20994 1.00538 0.98652 0.95533 1.22100 1.00159 0.92076 0.97898 0.92059 0.88335 0.92965 0.86752 0.88408 0.92015 0.92644 0.80029 0.86109 0.83418 0.83252 0.86563 0.94990 0.95781 0.92296 0.87944 0.79463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.24 71.98 0.67 -0.93 16 2 C 0.12 1.40 3.54 44.99 0.16 1.55 16 3 C -0.16 -1.43 9.23 71.98 0.66 -0.77 16 4 N -0.44 -8.74 2.61 -501.26 -1.31 -10.05 16 5 C 0.00 -0.10 10.31 83.15 0.86 0.76 16 6 C -0.22 -6.86 10.25 22.33 0.23 -6.63 16 7 C -0.16 -5.15 6.07 -20.20 -0.12 -5.27 16 8 C -0.01 -0.29 5.88 -20.04 -0.12 -0.41 16 9 C -0.14 -4.43 9.57 22.48 0.22 -4.22 16 10 C -0.11 -3.61 10.03 22.24 0.22 -3.39 16 11 C -0.15 -6.16 9.69 22.31 0.22 -5.94 16 12 C -0.06 -2.79 5.06 -19.90 -0.10 -2.89 16 13 C 0.02 1.12 4.17 29.10 0.12 1.24 16 14 C -0.52 -32.12 9.65 25.60 0.25 -31.87 16 15 H 0.02 1.69 7.98 -2.91 -0.02 1.67 16 16 C 0.01 0.41 5.47 84.65 0.46 0.87 16 17 N -0.95 -61.76 13.96 21.45 0.30 -61.46 16 18 Si 0.95 45.93 27.47 68.60 1.88 47.81 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 22 C -0.14 -6.11 9.24 22.48 0.21 -5.90 16 23 C 0.01 0.23 10.79 83.51 0.90 1.13 16 24 H 0.06 0.67 7.92 -2.38 -0.02 0.65 16 25 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.11 0.94 8.06 -2.39 -0.02 0.93 16 28 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.61 7.91 -2.39 -0.02 0.59 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.18 3.15 8.06 -2.91 -0.02 3.12 16 32 H 0.12 4.03 7.41 -2.91 -0.02 4.01 16 33 H 0.15 3.41 7.03 -2.91 -0.02 3.39 16 34 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 35 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.03 1.59 7.14 -2.39 -0.02 1.58 16 37 H 0.02 1.21 7.51 -2.38 -0.02 1.19 16 38 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 39 H 0.10 4.62 7.10 -2.91 -0.02 4.60 16 40 H 0.19 3.27 7.28 -2.91 -0.02 3.25 16 Total: -1.00 -76.55 333.37 6.65 -69.90 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.95 Total: 16.46 kcal Atomic # 6 Polarization: -67.49 SS G_CDS: 4.83 Total: -62.67 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.01 Total: -71.51 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.81 kcal Total: -76.55 6.65 -69.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239068844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.905 kcal (2) G-P(sol) polarization free energy of solvation -76.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds