Wall clock time and date at job start Mon Mar 30 2020 01:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.36426 * 125.50439 * 59.69060 * 4 2 1 6 6 C 1.34611 * 108.52351 * 179.88704 * 5 4 2 7 7 C 1.41823 * 107.33215 * 0.36949 * 6 5 4 8 8 C 1.48404 * 126.45752 * 179.75228 * 7 6 5 9 9 C 1.39346 * 120.11699 * 179.74715 * 8 7 6 10 10 C 1.38014 * 119.87035 * 179.74434 * 9 8 7 11 11 C 1.38322 * 120.12331 * 0.55382 * 10 9 8 12 12 C 1.50702 * 119.87749 * 179.72224 * 11 10 9 13 13 C 1.50700 * 109.47049 * 269.97584 * 12 11 10 14 14 H 1.07998 * 119.99945 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00076 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99926 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00165 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47446 * 59.99573 * 17 15 13 19 19 H 1.48496 * 109.47374 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46765 * 299.99802 * 17 15 13 21 21 C 1.38324 * 120.24498 * 359.69799 * 11 10 9 22 22 C 1.38008 * 120.11842 * 0.02562 * 21 11 10 23 23 C 1.36031 * 107.08209 * 359.76730 * 7 6 5 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 31 31 H 1.08001 * 125.73681 * 359.97438 * 5 4 2 32 32 H 1.07998 * 126.33365 * 180.16237 * 6 5 4 33 33 H 1.07993 * 120.06306 * 0.02562 * 9 8 7 34 34 H 1.08003 * 119.94047 * 180.25191 * 10 9 8 35 35 H 1.09003 * 109.47335 * 29.97725 * 12 11 10 36 36 H 1.09005 * 109.47025 * 149.97691 * 12 11 10 37 37 H 0.96999 * 120.00195 * 179.97438 * 16 15 13 38 38 H 1.08001 * 119.93803 * 180.02562 * 21 11 10 39 39 H 1.08004 * 120.06100 * 180.02562 * 22 21 11 40 40 H 1.08000 * 125.96403 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.7540 -0.3271 -2.4843 6 6 2.3722 -1.1933 -3.3086 7 6 3.0441 -2.1426 -2.4969 8 6 3.8555 -3.2912 -2.9711 9 6 4.4652 -4.1432 -2.0523 10 6 5.2143 -5.2129 -2.4989 11 6 5.3698 -5.4333 -3.8555 12 6 6.1941 -6.5994 -4.3370 13 6 7.6289 -6.1677 -4.4984 14 1 7.9153 -5.1508 -4.2743 15 6 8.5759 -7.0710 -4.9321 16 7 8.2273 -8.3095 -5.2045 17 14 10.3546 -6.5361 -5.1315 18 1 10.8795 -6.0657 -3.8245 19 1 11.1666 -7.6847 -5.6072 20 1 10.4314 -5.4324 -6.1220 21 6 4.7710 -4.5877 -4.7719 22 6 4.0151 -3.5183 -4.3365 23 6 2.8044 -1.8021 -1.2019 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.1513 0.5150 -2.7911 32 1 2.3564 -1.1716 -4.3882 33 1 4.3481 -3.9694 -0.9929 34 1 5.6840 -5.8763 -1.7877 35 1 6.1379 -7.4092 -3.6094 36 1 5.8086 -6.9454 -5.2961 37 1 8.8935 -8.9449 -5.5100 38 1 4.8953 -4.7647 -5.8300 39 1 3.5477 -2.8589 -5.0528 40 1 3.1729 -2.3229 -0.3305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239068851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:06 Heat of formation + Delta-G solvation = 52.505591 kcal Electronic energy + Delta-G solvation = -19022.598533 eV Core-core repulsion = 16188.169108 eV Total energy + Delta-G solvation = -2834.429425 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22798 -38.34228 -35.66112 -33.42071 -31.64420 -30.30900 -29.49240 -28.67487 -27.73129 -26.29420 -23.39348 -22.67334 -21.65402 -20.80289 -19.27448 -19.07674 -17.45756 -16.25041 -15.44269 -14.94179 -14.90713 -14.47052 -14.20970 -14.15953 -13.54911 -13.27945 -13.10541 -12.73077 -12.68948 -12.44681 -12.27995 -12.10730 -12.01059 -11.78221 -11.49703 -11.44405 -11.15035 -11.00381 -10.59321 -10.46346 -10.03333 -9.57388 -9.38261 -8.77627 -8.36566 -8.21555 -8.13950 -7.04060 -5.98004 -4.01951 1.80742 2.22653 2.46251 2.84652 3.36123 3.39464 3.41780 3.48065 4.21491 4.47054 4.53017 4.63087 4.80105 4.87848 5.06319 5.17163 5.20720 5.26084 5.33617 5.35804 5.47002 5.58869 5.63702 5.70300 5.71361 5.82612 6.12387 6.14834 6.20234 6.39334 6.55721 6.79779 6.87666 7.04828 7.20110 7.30633 7.34778 7.41164 7.50220 7.58728 7.87945 7.96479 7.97910 8.39615 9.03415 9.61413 11.11354 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038748 B = 0.003138 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.453734 B = 8919.714083 C = 9053.253761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 C -0.163 4.163 4 N -0.444 5.444 5 C -0.018 4.018 6 C -0.187 4.187 7 C -0.109 4.109 8 C -0.040 4.040 9 C -0.120 4.120 10 C -0.122 4.122 11 C -0.038 4.038 12 C 0.048 3.952 13 C -0.510 4.510 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.011 4.011 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.155 0.845 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.262 0.738 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.425 17.442 10.227 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 C -0.221 4.221 4 N -0.121 5.121 5 C -0.147 4.147 6 C -0.212 4.212 7 C -0.115 4.115 8 C -0.041 4.041 9 C -0.138 4.138 10 C -0.141 4.141 11 C -0.038 4.038 12 C 0.011 3.989 13 C -0.548 4.548 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.141 4.141 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.152 0.848 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.488 17.466 10.485 25.591 hybrid contribution 1.067 0.247 -0.151 1.106 sum -14.421 17.714 10.334 25.071 Atomic orbital electron populations 1.22175 0.93706 1.03177 1.02971 1.21377 0.95182 0.93917 0.86958 1.22175 1.02281 0.94632 1.02962 1.44090 1.39626 1.22724 1.05631 1.21502 1.07237 1.03238 0.82691 1.20899 1.03752 0.97675 0.98824 1.18355 1.03366 0.97807 0.92009 1.17984 0.98724 0.94326 0.93027 1.20945 0.99082 0.95749 0.98033 1.20968 0.99321 0.97884 0.95879 1.20685 0.93309 0.97181 0.92651 1.18349 0.93349 0.90357 0.96868 1.21053 0.92169 0.96891 1.44695 0.92520 1.25013 0.99008 0.94908 0.95453 1.69952 1.34275 1.03542 1.45714 0.86602 0.84504 0.78015 0.78597 1.20191 1.21279 1.20176 1.20996 0.98137 0.95240 0.99655 1.20973 0.99845 0.97952 0.94399 1.21791 1.01687 0.92068 0.98518 0.91693 0.90884 0.91749 0.88567 0.91755 0.90879 0.91669 0.82794 0.84783 0.87482 0.86602 0.95438 0.95413 0.92852 0.86553 0.87141 0.82318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.23 37.16 0.34 -0.63 16 2 C 0.13 0.93 3.54 -67.93 -0.24 0.69 16 3 C -0.16 -1.00 9.24 37.16 0.34 -0.65 16 4 N -0.44 -4.79 2.61 -109.79 -0.29 -5.08 16 5 C -0.02 -0.21 10.31 -16.79 -0.17 -0.38 16 6 C -0.19 -2.57 10.25 -39.50 -0.40 -2.97 16 7 C -0.11 -1.69 6.07 -105.13 -0.64 -2.32 16 8 C -0.04 -0.71 5.88 -104.89 -0.62 -1.33 16 9 C -0.12 -2.16 9.57 -39.25 -0.38 -2.53 16 10 C -0.12 -2.52 9.68 -39.63 -0.38 -2.90 16 11 C -0.04 -0.87 5.07 -104.56 -0.53 -1.40 16 12 C 0.05 1.26 5.10 -29.03 -0.15 1.12 16 13 C -0.51 -14.67 9.09 -34.44 -0.31 -14.99 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 17 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C -0.12 -2.54 9.68 -39.63 -0.38 -2.92 16 22 C -0.11 -2.09 9.59 -39.26 -0.38 -2.46 16 23 C -0.01 -0.14 10.79 -16.43 -0.18 -0.32 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.39 7.91 -51.93 -0.41 -0.02 16 27 H 0.10 0.62 8.06 -51.93 -0.42 0.20 16 28 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.13 1.70 7.41 -52.49 -0.39 1.31 16 33 H 0.11 1.62 7.03 -52.49 -0.37 1.25 16 34 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 35 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 39 H 0.11 1.77 7.10 -52.48 -0.37 1.40 16 40 H 0.16 1.79 7.28 -52.49 -0.38 1.41 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -31.98 336.97 -9.76 -41.74 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.09 Total: -0.04 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: -4.17 Total: -32.45 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.45 Total: -31.29 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.98 -9.76 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239068851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.249 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds