Wall clock time and date at job start Mon Mar 30 2020 00:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46993 * 2 1 4 4 C 1.53001 * 109.46745 * 239.99594 * 2 1 3 5 5 C 1.50705 * 109.46800 * 119.99834 * 2 1 3 6 6 C 1.32732 * 120.00262 * 359.72114 * 5 2 1 7 7 C 1.47568 * 119.99986 * 180.27326 * 6 5 2 8 8 C 1.39388 * 120.30389 * 344.37300 * 7 6 5 9 9 C 1.38264 * 120.08001 * 179.72030 * 8 7 6 10 10 C 1.38075 * 120.79414 * 0.57255 * 9 8 7 11 11 C 1.39132 * 120.29083 * 359.69173 * 10 9 8 12 12 N 1.38182 * 132.73450 * 180.02562 * 11 10 9 13 13 H 0.96993 * 124.70652 * 359.95481 * 12 11 10 14 14 C 1.35581 * 110.58881 * 179.97438 * 12 11 10 15 15 C 1.39020 * 109.24232 * 0.02562 * 14 12 11 16 16 C 1.40973 * 126.92954 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99675 * 203.61001 * 16 15 14 18 18 C 1.39675 * 120.00448 * 23.60931 * 16 15 14 19 19 N 1.31082 * 119.99642 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46937 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46880 * 120.00051 * 20 18 16 23 23 H 1.48493 * 109.47173 * 239.99741 * 20 18 16 24 24 C 1.40242 * 119.38202 * 0.02692 * 11 10 9 25 25 H 1.09013 * 109.46910 * 300.00485 * 1 2 3 26 26 H 1.08997 * 109.47251 * 59.99776 * 1 2 3 27 27 H 1.08999 * 109.47466 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46957 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47309 * 299.99430 * 3 2 1 30 30 H 1.08996 * 109.47535 * 60.00105 * 3 2 1 31 31 H 1.08997 * 109.47403 * 300.00355 * 4 2 1 32 32 H 1.08997 * 109.46732 * 60.00311 * 4 2 1 33 33 H 1.09005 * 109.46748 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.99270 * 179.97438 * 5 2 1 35 35 H 1.08002 * 119.99909 * 0.27566 * 6 5 2 36 36 H 1.08006 * 119.96186 * 0.02562 * 8 7 6 37 37 H 1.07999 * 119.60551 * 180.28719 * 9 8 7 38 38 H 1.08000 * 119.85557 * 179.71993 * 10 9 8 39 39 H 1.08002 * 125.38014 * 180.02562 * 14 12 11 40 40 H 0.96998 * 120.00123 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1698 -1.2100 2.1070 7 6 1.6617 -1.9003 3.3150 8 6 2.9885 -2.3202 3.3940 9 6 3.4459 -2.9614 4.5303 10 6 2.5994 -3.2054 5.5935 11 6 1.2691 -2.8017 5.5384 12 7 0.2189 -2.9089 6.4300 13 1 0.2771 -3.3246 7.3044 14 6 -0.9043 -2.3530 5.9128 15 6 -0.6269 -1.8546 4.6450 16 6 -1.5250 -1.2021 3.7761 17 1 -1.3389 -1.1959 2.7123 18 6 -2.6556 -0.5636 4.2910 19 7 -2.8811 -0.5707 5.5823 20 14 -3.8460 0.3004 3.1396 21 1 -3.3678 0.1647 1.7404 22 1 -5.1914 -0.3156 3.2654 23 1 -3.9250 1.7393 3.4980 24 6 0.7962 -2.1452 4.3928 25 1 -0.3633 0.5140 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6765 -1.7490 -1.2492 32 1 1.6766 -0.2075 -2.1392 33 1 3.1300 -0.7218 -1.2490 34 1 3.0941 -0.8094 1.4012 35 1 0.1079 -1.1112 1.9361 36 1 3.6613 -2.1400 2.5685 37 1 4.4766 -3.2793 4.5851 38 1 2.9717 -3.7115 6.4719 39 1 -1.8631 -2.3049 6.4075 40 1 -3.6664 -0.1277 5.9399 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241564500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:20 Heat of formation + Delta-G solvation = 46.143234 kcal Electronic energy + Delta-G solvation = -20239.388535 eV Core-core repulsion = 17404.683217 eV Total energy + Delta-G solvation = -2834.705318 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72677 -37.63233 -35.77583 -33.58503 -32.13845 -29.71103 -28.00039 -27.56281 -27.00219 -26.78492 -24.76864 -22.68585 -20.69248 -20.30269 -19.31872 -17.52347 -16.98830 -15.77414 -15.27828 -14.83808 -14.63248 -14.30763 -13.86277 -13.80023 -13.12735 -12.92764 -12.82294 -12.51875 -12.14501 -11.88457 -11.68524 -11.40513 -11.30303 -11.19188 -11.08100 -10.84992 -10.84435 -10.63141 -10.58528 -10.26719 -10.18949 -9.69626 -9.59127 -9.32825 -8.99186 -7.76723 -7.06172 -6.46727 -6.38799 -3.98471 1.74092 2.60055 3.07020 3.19775 3.23909 3.37001 4.10312 4.22956 4.51708 4.89910 5.05592 5.13570 5.32685 5.55274 5.63068 5.66638 5.81074 5.82522 5.89374 5.96041 5.99743 6.01051 6.15135 6.19074 6.24340 6.32565 6.47051 6.49923 6.58894 6.61393 6.73484 6.82790 7.09487 7.18893 7.23255 7.37887 7.41652 7.62853 7.72836 7.83400 8.07030 8.34367 8.67765 9.00487 9.14517 9.20236 10.56586 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.009230 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.010658 B = 3032.948797 C = 5281.401152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.034 4.034 3 C -0.136 4.136 4 C -0.134 4.134 5 C -0.176 4.176 6 C -0.091 4.091 7 C -0.005 4.005 8 C -0.176 4.176 9 C -0.118 4.118 10 C -0.150 4.150 11 C 0.083 3.917 12 N -0.593 5.593 13 H 0.394 0.606 14 C -0.072 4.072 15 C 0.024 3.976 16 C -0.428 4.428 17 H 0.075 0.925 18 C 0.061 3.939 19 N -0.837 5.837 20 Si 0.904 3.096 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.279 1.279 24 C -0.110 4.110 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.137 0.863 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.173 0.827 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 -0.273 -6.155 9.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 C -0.193 4.193 4 C -0.192 4.192 5 C -0.193 4.193 6 C -0.108 4.108 7 C -0.006 4.006 8 C -0.196 4.196 9 C -0.137 4.137 10 C -0.172 4.172 11 C -0.028 4.028 12 N -0.194 5.194 13 H 0.227 0.773 14 C -0.196 4.196 15 C 0.018 3.982 16 C -0.461 4.461 17 H 0.093 0.907 18 C -0.149 4.149 19 N -0.468 5.468 20 Si 0.730 3.270 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.117 4.117 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.155 0.845 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.190 0.810 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.426 -0.193 -5.908 8.731 hybrid contribution -0.518 0.291 0.202 0.627 sum 5.908 0.098 -5.706 8.214 Atomic orbital electron populations 1.22005 0.94419 1.02271 1.01804 1.19506 0.95513 0.94731 0.93651 1.21814 1.00573 0.95376 1.01521 1.21811 1.00596 1.00337 0.96425 1.23079 0.98740 1.01711 0.95817 1.22311 1.00946 0.95630 0.91939 1.18379 0.92164 0.97220 0.92800 1.20713 0.94921 1.05364 0.98630 1.20313 0.97939 1.01664 0.93834 1.19840 0.91199 1.06598 0.99526 1.18159 0.89533 1.03202 0.91878 1.41422 1.08983 1.53155 1.15870 0.77274 1.22615 0.89800 1.08127 0.99033 1.17988 0.88285 0.98284 0.93603 1.18732 1.04235 1.29139 0.93967 0.90735 1.25602 0.98100 0.95958 0.95209 1.69718 1.26103 1.38755 1.12239 0.86304 0.80209 0.79199 0.81270 1.18637 1.20423 1.20423 1.19569 0.95305 1.03473 0.93369 0.91621 0.93219 0.92188 0.92973 0.93049 0.92405 0.92629 0.93047 0.92966 0.87746 0.84525 0.87453 0.87548 0.88192 0.81027 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 7.13 37.16 0.26 -2.01 16 2 C -0.03 -0.49 0.99 -155.66 -0.15 -0.64 16 3 C -0.14 -1.76 8.46 37.16 0.31 -1.45 16 4 C -0.13 -1.65 8.46 37.16 0.31 -1.34 16 5 C -0.18 -2.95 8.14 -36.19 -0.29 -3.25 16 6 C -0.09 -1.83 8.57 -37.66 -0.32 -2.15 16 7 C -0.01 -0.11 5.85 -104.86 -0.61 -0.73 16 8 C -0.18 -3.40 9.34 -39.14 -0.37 -3.77 16 9 C -0.12 -2.16 9.99 -39.63 -0.40 -2.56 16 10 C -0.15 -2.91 10.06 -39.31 -0.40 -3.31 16 11 C 0.08 1.87 7.23 -83.92 -0.61 1.26 16 12 N -0.59 -12.90 5.99 -9.81 -0.06 -12.96 16 13 H 0.39 6.99 8.96 -40.82 -0.37 6.63 16 14 C -0.07 -1.80 10.76 -15.61 -0.17 -1.97 16 15 C 0.02 0.63 5.96 -104.84 -0.62 0.00 16 16 C -0.43 -11.34 8.81 -38.01 -0.34 -11.67 16 17 H 0.07 1.90 5.33 -52.49 -0.28 1.62 16 18 C 0.06 1.58 5.47 -17.34 -0.09 1.48 16 19 N -0.84 -22.02 10.89 55.54 0.60 -21.41 16 20 Si 0.90 19.49 29.56 -169.99 -5.02 14.47 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.11 -2.72 6.19 -104.60 -0.65 -3.36 16 25 H 0.06 1.12 7.49 -51.92 -0.39 0.74 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.95 7.51 -51.93 -0.39 0.56 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 1.66 6.32 -52.49 -0.33 1.33 16 35 H 0.14 2.92 2.82 -52.49 -0.15 2.77 16 36 H 0.11 1.80 6.46 -52.48 -0.34 1.46 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.17 4.41 6.48 -52.49 -0.34 4.07 16 40 H 0.27 6.61 8.30 -40.82 -0.34 6.27 16 LS Contribution 321.94 15.07 4.85 4.85 Total: -1.00 -28.05 321.94 -9.28 -37.33 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -5.52 Total: 13.19 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: -4.13 Total: -35.46 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.55 Total: -34.37 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.05 -9.28 -37.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241564500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.472 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds