Wall clock time and date at job start Mon Mar 30 2020 00:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46993 * 2 1 4 4 C 1.53001 * 109.46745 * 239.99594 * 2 1 3 5 5 C 1.50705 * 109.46800 * 119.99834 * 2 1 3 6 6 C 1.32732 * 120.00262 * 359.72114 * 5 2 1 7 7 C 1.47568 * 119.99986 * 180.27326 * 6 5 2 8 8 C 1.39388 * 120.30389 * 344.37300 * 7 6 5 9 9 C 1.38264 * 120.08001 * 179.72030 * 8 7 6 10 10 C 1.38075 * 120.79414 * 0.57255 * 9 8 7 11 11 C 1.39132 * 120.29083 * 359.69173 * 10 9 8 12 12 N 1.38182 * 132.73450 * 180.02562 * 11 10 9 13 13 H 0.96993 * 124.70652 * 359.95481 * 12 11 10 14 14 C 1.35581 * 110.58881 * 179.97438 * 12 11 10 15 15 C 1.39020 * 109.24232 * 0.02562 * 14 12 11 16 16 C 1.40973 * 126.92954 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99675 * 203.61001 * 16 15 14 18 18 C 1.39675 * 120.00448 * 23.60931 * 16 15 14 19 19 N 1.31082 * 119.99642 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46937 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46880 * 120.00051 * 20 18 16 23 23 H 1.48493 * 109.47173 * 239.99741 * 20 18 16 24 24 C 1.40242 * 119.38202 * 0.02692 * 11 10 9 25 25 H 1.09013 * 109.46910 * 300.00485 * 1 2 3 26 26 H 1.08997 * 109.47251 * 59.99776 * 1 2 3 27 27 H 1.08999 * 109.47466 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46957 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47309 * 299.99430 * 3 2 1 30 30 H 1.08996 * 109.47535 * 60.00105 * 3 2 1 31 31 H 1.08997 * 109.47403 * 300.00355 * 4 2 1 32 32 H 1.08997 * 109.46732 * 60.00311 * 4 2 1 33 33 H 1.09005 * 109.46748 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.99270 * 179.97438 * 5 2 1 35 35 H 1.08002 * 119.99909 * 0.27566 * 6 5 2 36 36 H 1.08006 * 119.96186 * 0.02562 * 8 7 6 37 37 H 1.07999 * 119.60551 * 180.28719 * 9 8 7 38 38 H 1.08000 * 119.85557 * 179.71993 * 10 9 8 39 39 H 1.08002 * 125.38014 * 180.02562 * 14 12 11 40 40 H 0.96998 * 120.00123 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1698 -1.2100 2.1070 7 6 1.6617 -1.9003 3.3150 8 6 2.9885 -2.3202 3.3940 9 6 3.4459 -2.9614 4.5303 10 6 2.5994 -3.2054 5.5935 11 6 1.2691 -2.8017 5.5384 12 7 0.2189 -2.9089 6.4300 13 1 0.2771 -3.3246 7.3044 14 6 -0.9043 -2.3530 5.9128 15 6 -0.6269 -1.8546 4.6450 16 6 -1.5250 -1.2021 3.7761 17 1 -1.3389 -1.1959 2.7123 18 6 -2.6556 -0.5636 4.2910 19 7 -2.8811 -0.5707 5.5823 20 14 -3.8460 0.3004 3.1396 21 1 -3.3678 0.1647 1.7404 22 1 -5.1914 -0.3156 3.2654 23 1 -3.9250 1.7393 3.4980 24 6 0.7962 -2.1452 4.3928 25 1 -0.3633 0.5140 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6765 -1.7490 -1.2492 32 1 1.6766 -0.2075 -2.1392 33 1 3.1300 -0.7218 -1.2490 34 1 3.0941 -0.8094 1.4012 35 1 0.1079 -1.1112 1.9361 36 1 3.6613 -2.1400 2.5685 37 1 4.4766 -3.2793 4.5851 38 1 2.9717 -3.7115 6.4719 39 1 -1.8631 -2.3049 6.4075 40 1 -3.6664 -0.1277 5.9399 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241564500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:19 Heat of formation + Delta-G solvation = 33.055023 kcal Electronic energy + Delta-G solvation = -20239.956082 eV Core-core repulsion = 17404.683217 eV Total energy + Delta-G solvation = -2835.272865 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.41236 -38.92107 -37.32535 -35.43731 -33.67160 -31.43088 -29.59541 -29.16100 -28.07089 -27.99201 -26.61305 -24.19037 -22.34416 -21.82465 -21.07002 -18.85902 -18.67652 -17.63391 -16.94335 -16.19140 -16.10162 -16.01459 -15.09554 -15.03018 -14.81923 -14.48837 -14.30306 -14.17776 -13.33517 -13.15334 -13.11701 -12.95594 -12.92365 -12.62155 -12.50474 -12.46890 -12.38336 -12.03735 -11.83079 -11.66459 -11.65306 -11.35906 -11.28183 -10.97778 -10.65809 -9.43198 -8.73750 -8.38430 -8.13421 -5.95304 0.18757 1.01048 1.33419 1.39446 1.52647 1.83264 2.28069 2.35998 2.86166 3.20672 3.64826 3.81954 3.98386 4.19401 4.25096 4.31997 4.44588 4.59142 4.60060 4.74276 4.81892 4.84693 4.85577 4.96106 5.02523 5.07922 5.08500 5.22388 5.26001 5.32032 5.37584 5.45110 5.50366 5.54584 5.62149 5.76485 5.86365 5.93015 6.02365 6.26293 6.29680 6.58858 6.80900 7.16679 7.22742 7.38574 8.65872 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.009230 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.010658 B = 3032.948797 C = 5281.401152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.133 4.133 4 C -0.129 4.129 5 C -0.140 4.140 6 C -0.133 4.133 7 C -0.022 4.022 8 C -0.175 4.175 9 C -0.105 4.105 10 C -0.156 4.156 11 C 0.071 3.929 12 N -0.588 5.588 13 H 0.411 0.589 14 C -0.086 4.086 15 C -0.016 4.016 16 C -0.452 4.452 17 H 0.071 0.929 18 C 0.017 3.983 19 N -0.867 5.867 20 Si 0.968 3.032 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.275 1.275 24 C -0.156 4.156 25 H 0.037 0.963 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.134 0.866 39 H 0.159 0.841 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.477 -0.072 -7.961 12.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.039 4.039 3 C -0.190 4.190 4 C -0.187 4.187 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.023 4.023 8 C -0.195 4.195 9 C -0.124 4.124 10 C -0.177 4.177 11 C -0.039 4.039 12 N -0.191 5.191 13 H 0.247 0.753 14 C -0.211 4.211 15 C -0.021 4.021 16 C -0.486 4.486 17 H 0.089 0.911 18 C -0.190 4.190 19 N -0.499 5.499 20 Si 0.791 3.209 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.200 1.200 24 C -0.163 4.163 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.170 0.830 38 H 0.152 0.848 39 H 0.176 0.824 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.212 -0.013 -7.698 12.005 hybrid contribution -1.189 0.200 0.697 1.392 sum 8.024 0.186 -7.001 10.650 Atomic orbital electron populations 1.21988 0.95645 1.01308 1.01477 1.19643 0.94623 0.95924 0.93673 1.21793 1.01591 0.93918 1.01702 1.21769 1.01579 0.99716 0.95594 1.23436 0.99001 0.98228 0.95085 1.22146 1.00510 0.99121 0.93288 1.18752 0.93229 0.97556 0.92751 1.21113 0.93994 1.04352 1.00041 1.20883 0.99754 0.99297 0.92426 1.20270 0.89716 1.06384 1.01329 1.18607 0.90827 1.03098 0.91349 1.41238 1.08062 1.53191 1.16643 0.75316 1.22376 0.90420 1.09170 0.99094 1.18419 0.90010 0.99198 0.94494 1.18975 1.05305 1.30217 0.94073 0.91068 1.26399 0.99421 0.96487 0.96713 1.69812 1.26807 1.39685 1.13605 0.85328 0.78056 0.78010 0.79474 1.18068 1.19623 1.20012 1.19879 0.95049 1.05755 0.95601 0.94384 0.90988 0.93586 0.91306 0.91027 0.94192 0.93380 0.91159 0.91331 0.85969 0.86857 0.84457 0.82974 0.84840 0.82437 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 7.13 71.98 0.51 -3.98 16 2 C -0.04 -1.04 0.99 -52.93 -0.05 -1.09 16 3 C -0.13 -3.09 8.46 71.98 0.61 -2.48 16 4 C -0.13 -2.75 8.46 71.98 0.61 -2.14 16 5 C -0.14 -4.50 8.14 24.51 0.20 -4.30 16 6 C -0.13 -5.47 8.57 23.56 0.20 -5.27 16 7 C -0.02 -0.99 5.85 -20.02 -0.12 -1.11 16 8 C -0.18 -6.32 9.34 22.55 0.21 -6.11 16 9 C -0.10 -3.42 9.99 22.24 0.22 -3.20 16 10 C -0.16 -5.66 10.06 22.45 0.23 -5.44 16 11 C 0.07 3.23 7.23 38.84 0.28 3.51 16 12 N -0.59 -26.37 5.99 -184.94 -1.11 -27.47 16 13 H 0.41 14.85 8.96 -92.71 -0.83 14.02 16 14 C -0.09 -4.58 10.76 84.30 0.91 -3.68 16 15 C -0.02 -0.88 5.96 -20.00 -0.12 -1.00 16 16 C -0.45 -25.60 8.81 23.29 0.21 -25.39 16 17 H 0.07 3.92 5.33 -2.91 -0.02 3.91 16 18 C 0.02 0.89 5.47 85.15 0.47 1.36 16 19 N -0.87 -48.02 10.89 21.79 0.24 -47.79 16 20 Si 0.97 41.65 29.56 68.60 2.03 43.68 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 C -0.16 -7.98 6.19 -19.85 -0.12 -8.10 16 25 H 0.04 1.35 7.49 -2.38 -0.02 1.33 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.50 7.51 -2.39 -0.02 1.48 16 28 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.12 3.47 6.32 -2.91 -0.02 3.45 16 35 H 0.11 5.18 2.82 -2.91 -0.01 5.17 16 36 H 0.14 4.02 6.46 -2.91 -0.02 4.01 16 37 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.16 8.71 6.48 -2.91 -0.02 8.69 16 40 H 0.27 14.01 8.30 -92.71 -0.77 13.24 16 Total: -1.00 -65.02 321.94 5.62 -59.40 By element: Atomic # 1 Polarization: 40.37 SS G_CDS: 0.22 Total: 40.59 kcal Atomic # 6 Polarization: -72.65 SS G_CDS: 4.24 Total: -68.41 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -0.87 Total: -75.26 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -65.02 5.62 -59.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241564500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.455 kcal (2) G-P(sol) polarization free energy of solvation -65.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds