Wall clock time and date at job start Mon Mar 30 2020 00:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00044 * 2 1 4 4 H 1.48497 * 109.47272 * 240.00268 * 3 2 1 5 5 H 1.48502 * 109.47387 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47364 * 120.00021 * 3 2 1 7 7 C 1.37873 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47007 * 179.97438 * 9 7 2 11 11 C 1.38345 * 119.85417 * 90.00003 * 10 9 7 12 12 C 1.37978 * 120.14081 * 179.97438 * 11 10 9 13 13 C 1.39536 * 119.85277 * 0.02562 * 12 11 10 14 14 C 1.47818 * 120.14023 * 179.97438 * 13 12 11 15 15 C 1.31808 * 118.49332 * 65.00593 * 14 13 12 16 16 C 1.51620 * 120.28634 * 179.13316 * 15 14 13 17 17 H 1.09001 * 112.93024 * 158.03676 * 16 15 14 18 18 C 1.55147 * 105.90473 * 282.27757 * 16 15 14 19 19 C 1.54341 * 104.24297 * 84.12826 * 18 16 15 20 20 C 1.54056 * 105.08105 * 4.06545 * 19 18 16 21 21 H 1.09009 * 111.21111 * 142.61978 * 20 19 18 22 22 C 1.53024 * 109.95105 * 266.96125 * 20 19 18 23 23 N 1.48757 * 104.79449 * 22.30409 * 20 19 18 24 24 C 1.39535 * 119.72350 * 0.28205 * 13 12 11 25 25 C 1.37984 * 119.84867 * 359.44306 * 24 13 12 26 26 H 0.96996 * 119.99854 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47351 * 60.00210 * 9 7 2 28 28 H 1.09005 * 109.46840 * 299.99921 * 9 7 2 29 29 H 1.07995 * 119.93321 * 0.02562 * 11 10 9 30 30 H 1.08002 * 120.07331 * 180.02562 * 12 11 10 31 31 H 1.08005 * 119.86149 * 359.14948 * 15 14 13 32 32 H 1.09006 * 110.47826 * 325.43843 * 18 16 15 33 33 H 1.09000 * 110.48025 * 202.82123 * 18 16 15 34 34 H 1.09007 * 110.32180 * 245.16999 * 19 18 16 35 35 H 1.08999 * 110.32207 * 122.96778 * 19 18 16 36 36 H 1.09000 * 109.22951 * 190.25560 * 22 20 19 37 37 H 1.08998 * 109.23214 * 309.62249 * 22 20 19 38 38 H 1.00907 * 110.99453 * 77.80279 * 23 20 19 39 39 H 1.07992 * 120.07338 * 179.71835 * 24 13 12 40 40 H 1.07994 * 119.92587 * 180.28242 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.6788 -4.1685 1.1975 12 6 3.5750 -5.2176 1.2032 13 6 4.0294 -5.7496 -0.0041 14 6 4.9900 -6.8731 -0.0054 15 6 4.6010 -8.0336 0.4839 16 6 5.5466 -9.2187 0.4847 17 1 5.2801 -9.9742 1.2239 18 6 5.5468 -9.7636 -0.9679 19 6 6.5803 -8.8842 -1.7032 20 6 7.1771 -7.9719 -0.6147 21 1 8.2431 -7.8110 -0.7758 22 6 6.4057 -6.6515 -0.5595 23 7 6.9273 -8.6916 0.6630 24 6 3.5782 -5.2124 -1.2102 25 6 2.6775 -4.1670 -1.2022 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5570 0.8897 29 1 2.3261 -3.7562 2.1312 30 1 3.9241 -5.6261 2.1401 31 1 3.6042 -8.1408 0.8857 32 1 4.5605 -9.6499 -1.4180 33 1 5.8557 -10.8088 -0.9832 34 1 6.0902 -8.2860 -2.4714 35 1 7.3593 -9.5052 -2.1455 36 1 6.9421 -5.9487 0.0781 37 1 6.3304 -6.2374 -1.5649 38 1 7.5880 -9.4437 0.7895 39 1 3.9296 -5.6167 -2.1479 40 1 2.3240 -3.7533 -2.1350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242021085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:47 Heat of formation + Delta-G solvation = 29.890834 kcal Electronic energy + Delta-G solvation = -19582.884712 eV Core-core repulsion = 16747.474637 eV Total energy + Delta-G solvation = -2835.410075 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35868 -38.46558 -34.27527 -32.74388 -31.34847 -30.38840 -30.22645 -30.05868 -26.85886 -24.70733 -23.66159 -21.94907 -21.82859 -20.38623 -20.04834 -17.79532 -17.27652 -16.30543 -15.25017 -15.04344 -14.60483 -14.49964 -14.40865 -14.15046 -14.08430 -12.98652 -12.80557 -12.75251 -12.58791 -12.44683 -12.05884 -11.75678 -11.43292 -11.31716 -11.28217 -10.95125 -10.86343 -10.72704 -10.62905 -10.35573 -10.20417 -9.52862 -9.43828 -8.95057 -8.72749 -8.41740 -8.26362 -7.59369 -6.03631 -4.07661 1.84906 2.10175 2.48077 3.32672 3.36523 3.40038 3.99932 4.35470 4.46463 4.50817 4.58079 4.72603 4.93863 5.04318 5.10091 5.14000 5.30559 5.33540 5.54029 5.56422 5.60670 5.61673 5.68235 5.77309 5.86958 5.98084 6.00482 6.02155 6.24759 6.24803 6.44086 6.54079 6.67909 6.80274 6.96972 7.15940 7.18416 7.20586 7.26532 7.51153 7.75408 7.86822 7.92130 8.32584 8.97436 9.56091 11.06160 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038676 B = 0.003548 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.795504 B = 7889.077796 C = 8073.930912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.046 3.954 10 C -0.030 4.030 11 C -0.125 4.125 12 C -0.106 4.106 13 C -0.092 4.092 14 C -0.048 4.048 15 C -0.158 4.158 16 C 0.099 3.901 17 H 0.100 0.900 18 C -0.149 4.149 19 C -0.151 4.151 20 C 0.065 3.935 21 H 0.090 0.910 22 C -0.063 4.063 23 N -0.653 5.653 24 C -0.109 4.109 25 C -0.126 4.126 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.333 0.667 39 H 0.109 0.891 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.250 -19.009 -1.673 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.009 3.991 10 C -0.030 4.030 11 C -0.143 4.143 12 C -0.124 4.124 13 C -0.092 4.092 14 C -0.048 4.048 15 C -0.176 4.176 16 C -0.011 4.011 17 H 0.118 0.882 18 C -0.188 4.188 19 C -0.191 4.191 20 C -0.045 4.045 21 H 0.108 0.892 22 C -0.101 4.101 23 N -0.279 5.279 24 C -0.127 4.127 25 C -0.144 4.144 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.148 0.852 39 H 0.127 0.873 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.956 -18.280 -1.203 21.876 hybrid contribution 0.484 0.276 -0.704 0.897 sum 12.440 -18.004 -1.907 21.967 Atomic orbital electron populations 1.69951 1.06034 1.26928 1.50464 1.25013 0.94891 0.99254 0.95174 0.86589 0.79529 0.82775 0.78754 1.20158 1.21226 1.20144 1.21024 0.93025 0.89870 1.51080 0.92515 1.18377 0.92624 0.89705 0.98347 1.20755 0.95673 0.94647 0.91922 1.21027 0.98343 0.96577 0.98370 1.21123 0.97859 0.97000 0.96444 1.18697 0.99298 0.97677 0.93485 1.20431 0.93477 0.92749 0.98192 1.22769 0.98978 0.93583 1.02263 1.22036 0.89194 0.94713 0.95178 0.88210 1.23144 1.00244 0.98856 0.96540 1.22900 0.98537 0.98458 0.99171 1.22656 0.99250 0.94656 0.87977 0.89219 1.20993 0.92122 0.96084 1.00877 1.63886 1.03110 1.27419 1.33525 1.21030 0.98305 0.96951 0.96377 1.21008 0.98439 0.96565 0.98343 0.92785 0.95349 0.95328 0.86400 0.87045 0.86935 0.90657 0.91881 0.90789 0.91762 0.90383 0.90965 0.85215 0.87297 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.50 9.09 -34.44 -0.31 -14.81 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 10 C -0.03 -0.66 5.07 -104.54 -0.53 -1.19 16 11 C -0.13 -2.52 9.68 -39.64 -0.38 -2.90 16 12 C -0.11 -1.87 9.68 -39.19 -0.38 -2.25 16 13 C -0.09 -1.52 5.23 -105.01 -0.55 -2.07 16 14 C -0.05 -0.66 5.25 -101.11 -0.53 -1.19 16 15 C -0.16 -1.97 8.58 -35.75 -0.31 -2.28 16 16 C 0.10 0.98 4.68 -66.19 -0.31 0.67 16 17 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.15 -1.30 6.40 -24.89 -0.16 -1.46 16 19 C -0.15 -1.31 6.37 -25.48 -0.16 -1.48 16 20 C 0.06 0.62 4.26 -66.12 -0.28 0.34 16 21 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 22 C -0.06 -0.76 5.52 -26.39 -0.15 -0.91 16 23 N -0.65 -6.46 7.13 -96.00 -0.68 -7.15 16 24 C -0.11 -1.86 9.77 -39.19 -0.38 -2.25 16 25 C -0.13 -2.50 9.68 -39.64 -0.38 -2.88 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 28 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 31 H 0.11 1.44 8.02 -52.48 -0.42 1.01 16 32 H 0.07 0.71 7.84 -51.93 -0.41 0.31 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.69 7.72 -51.93 -0.40 0.29 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 38 H 0.33 2.59 8.93 -39.29 -0.35 2.23 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -30.12 326.70 -11.29 -41.40 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.18 Total: 2.04 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: -5.06 Total: -32.03 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.05 Total: -33.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.12 -11.29 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242021085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.295 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds