Wall clock time and date at job start Mon Mar 30 2020 00:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00044 * 2 1 4 4 H 1.48497 * 109.47272 * 240.00268 * 3 2 1 5 5 H 1.48502 * 109.47387 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47364 * 120.00021 * 3 2 1 7 7 C 1.37873 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47007 * 179.97438 * 9 7 2 11 11 C 1.38345 * 119.85417 * 90.00003 * 10 9 7 12 12 C 1.37978 * 120.14081 * 179.97438 * 11 10 9 13 13 C 1.39536 * 119.85277 * 0.02562 * 12 11 10 14 14 C 1.47818 * 120.14023 * 179.97438 * 13 12 11 15 15 C 1.31808 * 118.49332 * 65.00593 * 14 13 12 16 16 C 1.51620 * 120.28634 * 179.13316 * 15 14 13 17 17 H 1.09001 * 112.93024 * 158.03676 * 16 15 14 18 18 C 1.55147 * 105.90473 * 282.27757 * 16 15 14 19 19 C 1.54341 * 104.24297 * 84.12826 * 18 16 15 20 20 C 1.54056 * 105.08105 * 4.06545 * 19 18 16 21 21 H 1.09009 * 111.21111 * 142.61978 * 20 19 18 22 22 C 1.53024 * 109.95105 * 266.96125 * 20 19 18 23 23 N 1.48757 * 104.79449 * 22.30409 * 20 19 18 24 24 C 1.39535 * 119.72350 * 0.28205 * 13 12 11 25 25 C 1.37984 * 119.84867 * 359.44306 * 24 13 12 26 26 H 0.96996 * 119.99854 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47351 * 60.00210 * 9 7 2 28 28 H 1.09005 * 109.46840 * 299.99921 * 9 7 2 29 29 H 1.07995 * 119.93321 * 0.02562 * 11 10 9 30 30 H 1.08002 * 120.07331 * 180.02562 * 12 11 10 31 31 H 1.08005 * 119.86149 * 359.14948 * 15 14 13 32 32 H 1.09006 * 110.47826 * 325.43843 * 18 16 15 33 33 H 1.09000 * 110.48025 * 202.82123 * 18 16 15 34 34 H 1.09007 * 110.32180 * 245.16999 * 19 18 16 35 35 H 1.08999 * 110.32207 * 122.96778 * 19 18 16 36 36 H 1.09000 * 109.22951 * 190.25560 * 22 20 19 37 37 H 1.08998 * 109.23214 * 309.62249 * 22 20 19 38 38 H 1.00907 * 110.99453 * 77.80279 * 23 20 19 39 39 H 1.07992 * 120.07338 * 179.71835 * 24 13 12 40 40 H 1.07994 * 119.92587 * 180.28242 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.6788 -4.1685 1.1975 12 6 3.5750 -5.2176 1.2032 13 6 4.0294 -5.7496 -0.0041 14 6 4.9900 -6.8731 -0.0054 15 6 4.6010 -8.0336 0.4839 16 6 5.5466 -9.2187 0.4847 17 1 5.2801 -9.9742 1.2239 18 6 5.5468 -9.7636 -0.9679 19 6 6.5803 -8.8842 -1.7032 20 6 7.1771 -7.9719 -0.6147 21 1 8.2431 -7.8110 -0.7758 22 6 6.4057 -6.6515 -0.5595 23 7 6.9273 -8.6916 0.6630 24 6 3.5782 -5.2124 -1.2102 25 6 2.6775 -4.1670 -1.2022 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5570 0.8897 29 1 2.3261 -3.7562 2.1312 30 1 3.9241 -5.6261 2.1401 31 1 3.6042 -8.1408 0.8857 32 1 4.5605 -9.6499 -1.4180 33 1 5.8557 -10.8088 -0.9832 34 1 6.0902 -8.2860 -2.4714 35 1 7.3593 -9.5052 -2.1455 36 1 6.9421 -5.9487 0.0781 37 1 6.3304 -6.2374 -1.5649 38 1 7.5880 -9.4437 0.7895 39 1 3.9296 -5.6167 -2.1479 40 1 2.3240 -3.7533 -2.1350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242021085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:46 Heat of formation + Delta-G solvation = 13.575498 kcal Electronic energy + Delta-G solvation = -19583.592198 eV Core-core repulsion = 16747.474637 eV Total energy + Delta-G solvation = -2836.117561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21939 -39.89403 -35.87510 -34.50070 -32.18968 -31.96329 -31.69229 -30.78506 -28.61740 -25.76525 -25.22171 -23.35461 -23.21196 -21.49841 -21.08574 -18.64242 -18.54549 -18.27951 -16.87979 -16.17136 -16.08759 -15.73884 -15.59173 -15.20460 -15.00621 -14.52187 -14.25567 -14.21912 -13.77598 -13.50780 -13.39353 -13.28202 -13.00687 -12.60058 -12.57713 -12.46948 -12.18423 -11.91044 -11.78736 -11.66923 -11.51148 -11.49525 -11.18704 -10.62126 -9.86622 -9.76403 -9.64324 -9.10465 -8.21602 -6.35874 0.43353 0.59193 1.34902 1.38935 1.41420 1.49881 2.38407 2.96385 3.08410 3.29875 3.64574 3.76310 4.01260 4.02582 4.09770 4.18064 4.23702 4.25078 4.35740 4.44588 4.64057 4.67075 4.67952 4.80459 4.82087 4.91783 5.03798 5.07702 5.10365 5.19169 5.22959 5.30273 5.33493 5.38575 5.49791 5.63472 5.68146 5.74868 5.77937 6.02561 6.06629 6.11349 6.25687 6.56364 6.76358 7.32743 8.87247 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038676 B = 0.003548 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.795504 B = 7889.077796 C = 8073.930912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.056 3.944 10 C -0.064 4.064 11 C -0.135 4.135 12 C -0.105 4.105 13 C -0.076 4.076 14 C -0.071 4.071 15 C -0.145 4.145 16 C 0.099 3.901 17 H 0.116 0.884 18 C -0.145 4.145 19 C -0.149 4.149 20 C 0.068 3.932 21 H 0.107 0.893 22 C -0.063 4.063 23 N -0.664 5.664 24 C -0.103 4.103 25 C -0.134 4.134 26 H 0.266 0.734 27 H 0.003 0.997 28 H 0.002 0.998 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.347 0.653 39 H 0.138 0.862 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.938 -20.790 -1.965 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.019 3.981 10 C -0.064 4.064 11 C -0.153 4.153 12 C -0.123 4.123 13 C -0.076 4.076 14 C -0.072 4.072 15 C -0.164 4.164 16 C -0.011 4.011 17 H 0.134 0.866 18 C -0.184 4.184 19 C -0.188 4.188 20 C -0.042 4.042 21 H 0.125 0.875 22 C -0.101 4.101 23 N -0.292 5.292 24 C -0.121 4.121 25 C -0.152 4.152 26 H 0.075 0.925 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.131 0.869 30 H 0.150 0.850 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.656 -20.081 -1.494 24.906 hybrid contribution -0.353 0.690 -0.586 0.972 sum 14.303 -19.391 -2.080 24.185 Atomic orbital electron populations 1.70077 1.07688 1.28089 1.51153 1.25947 0.95802 1.03167 0.94471 0.85475 0.78302 0.77956 0.79196 1.19178 1.20381 1.19300 1.21342 0.93040 0.91264 1.51229 0.92849 1.18112 0.92921 0.91283 0.95770 1.20458 0.96998 0.95065 0.93860 1.21026 0.99245 0.97598 0.97415 1.21322 0.96975 0.96018 0.98003 1.19070 0.98324 0.97462 0.92704 1.20426 0.94032 0.92112 1.00596 1.23044 0.99313 0.94217 0.99803 1.22105 0.88699 0.93753 0.96561 0.86575 1.23111 0.99893 0.99996 0.95383 1.22891 0.98912 0.98365 0.98650 1.22643 0.99838 0.93471 0.88282 0.87545 1.21011 0.91024 0.97486 1.00535 1.63812 1.03354 1.28264 1.33799 1.21280 0.97003 0.95744 0.98064 1.21042 0.99273 0.97571 0.97348 0.92490 0.97840 0.97950 0.86943 0.84976 0.87485 0.91616 0.89911 0.91560 0.89919 0.91541 0.90719 0.83540 0.84410 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.53 -31.22 9.09 25.60 0.23 -30.99 16 8 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 9 C 0.06 3.11 5.10 29.10 0.15 3.26 16 10 C -0.06 -2.96 5.07 -19.81 -0.10 -3.06 16 11 C -0.13 -5.58 9.68 22.23 0.22 -5.37 16 12 C -0.11 -3.65 9.68 22.52 0.22 -3.43 16 13 C -0.08 -2.41 5.23 -20.12 -0.11 -2.51 16 14 C -0.07 -1.81 5.25 -17.14 -0.09 -1.90 16 15 C -0.15 -3.29 8.58 25.21 0.22 -3.07 16 16 C 0.10 1.62 4.68 44.82 0.21 1.83 16 17 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 18 C -0.14 -2.02 6.40 31.79 0.20 -1.81 16 19 C -0.15 -2.05 6.37 31.41 0.20 -1.85 16 20 C 0.07 1.08 4.26 44.92 0.19 1.27 16 21 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 22 C -0.06 -1.37 5.52 30.82 0.17 -1.20 16 23 N -0.66 -10.85 7.13 -457.65 -3.26 -14.11 16 24 C -0.10 -3.45 9.77 22.52 0.22 -3.23 16 25 C -0.13 -5.47 9.68 22.23 0.22 -5.25 16 26 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 27 H 0.00 0.19 8.08 -2.39 -0.02 0.17 16 28 H 0.00 0.13 8.08 -2.38 -0.02 0.11 16 29 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 30 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 31 H 0.11 2.51 8.02 -2.91 -0.02 2.49 16 32 H 0.07 1.06 7.84 -2.38 -0.02 1.04 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 1.03 7.72 -2.38 -0.02 1.02 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.54 7.93 -2.39 -0.02 1.52 16 38 H 0.35 4.06 8.93 -89.69 -0.80 3.26 16 39 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 40 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -66.53 326.70 1.87 -64.65 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.22 Total: 15.75 kcal Atomic # 6 Polarization: -59.20 SS G_CDS: 2.61 Total: -56.59 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -2.98 Total: -70.87 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -66.53 1.87 -64.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242021085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.230 kcal (2) G-P(sol) polarization free energy of solvation -66.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds