Wall clock time and date at job start Mon Mar 30 2020 00:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99678 * 2 1 4 4 H 1.48491 * 109.47282 * 270.00323 * 3 2 1 5 5 H 1.48503 * 109.46879 * 30.00357 * 3 2 1 6 6 H 1.48497 * 109.46937 * 149.99875 * 3 2 1 7 7 C 1.37882 * 120.00474 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99361 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.38361 * 119.93188 * 90.00275 * 10 9 7 12 12 C 1.38320 * 120.28880 * 180.02562 * 11 10 9 13 13 C 1.37995 * 120.14447 * 359.97438 * 12 11 10 14 14 C 1.39520 * 119.85224 * 359.97438 * 13 12 11 15 15 C 1.47807 * 120.14000 * 180.02562 * 14 13 12 16 16 C 1.33398 * 117.85206 * 116.90746 * 15 14 13 17 17 C 1.51623 * 118.98197 * 179.53943 * 16 15 14 18 18 H 1.09002 * 112.92157 * 156.48059 * 17 16 15 19 19 C 1.55143 * 105.90891 * 280.72144 * 17 16 15 20 20 C 1.54346 * 104.23821 * 84.13200 * 19 17 16 21 21 C 1.54053 * 105.08400 * 4.06486 * 20 19 17 22 22 H 1.09000 * 111.20762 * 143.40868 * 21 20 19 23 23 C 1.50253 * 118.50228 * 295.00044 * 15 14 13 24 24 N 1.48749 * 105.48288 * 22.66807 * 21 20 19 25 25 C 1.37957 * 119.92914 * 270.27786 * 10 9 7 26 26 H 0.96999 * 120.00475 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46981 * 59.99875 * 9 7 2 28 28 H 1.08998 * 109.47026 * 300.00325 * 9 7 2 29 29 H 1.08004 * 119.85628 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.93095 * 179.97438 * 12 11 10 31 31 H 1.08000 * 120.07834 * 179.97438 * 13 12 11 32 32 H 1.07994 * 121.14379 * 357.96103 * 16 15 14 33 33 H 1.09001 * 110.47977 * 325.43999 * 19 17 16 34 34 H 1.08998 * 110.58811 * 202.87254 * 19 17 16 35 35 H 1.09006 * 110.31720 * 245.16087 * 20 19 17 36 36 H 1.09004 * 110.31848 * 122.96948 * 20 19 17 37 37 H 1.09002 * 109.23065 * 66.00997 * 23 15 14 38 38 H 1.09000 * 109.23091 * 306.60141 * 23 15 14 39 39 H 1.00905 * 110.99645 * 77.46892 * 24 21 20 40 40 H 1.08000 * 120.07115 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0140 -2.6147 -0.0023 11 6 4.2438 -3.2647 -1.2019 12 6 4.7044 -4.5689 -1.2115 13 6 4.9383 -5.2301 -0.0231 14 6 4.7097 -4.5799 1.1900 15 6 4.9586 -5.2819 2.4667 16 6 5.9020 -4.7928 3.2732 17 6 6.1713 -5.4866 4.5942 18 1 7.1733 -5.2947 4.9780 19 6 5.0508 -5.0154 5.5582 20 6 3.8673 -5.9586 5.2547 21 6 4.4116 -6.9658 4.2240 22 1 4.0011 -7.9617 4.3911 23 6 4.1113 -6.4755 2.8058 24 7 5.8887 -6.9547 4.3996 25 6 4.2385 -3.2663 1.1928 26 1 -0.4851 0.8400 0.0004 27 1 3.8753 -0.6802 0.8889 28 1 3.8746 -0.6798 -0.8911 29 1 4.0627 -2.7516 -2.1348 30 1 4.8814 -5.0710 -2.1512 31 1 5.2976 -6.2486 -0.0319 32 1 6.4886 -3.9318 2.9887 33 1 4.7776 -3.9811 5.3489 34 1 5.3676 -5.1227 6.5957 35 1 3.0345 -5.3967 4.8317 36 1 3.5540 -6.4765 6.1612 37 1 4.3201 -7.2769 2.0971 38 1 3.0590 -6.2001 2.7364 39 1 6.1601 -7.4867 5.2129 40 1 4.0550 -2.7592 2.1285 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242021364.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:28 Heat of formation + Delta-G solvation = 14.948297 kcal Electronic energy + Delta-G solvation = -19894.785780 eV Core-core repulsion = 17058.727749 eV Total energy + Delta-G solvation = -2836.058032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22590 -39.88386 -35.72371 -34.59740 -33.10355 -32.17192 -30.87687 -30.49855 -29.29089 -25.63875 -24.80512 -24.46663 -22.51262 -21.27109 -21.08747 -19.00232 -18.67302 -18.03665 -17.08896 -16.37799 -16.22083 -15.64102 -15.54412 -15.19101 -15.08319 -14.79215 -14.33809 -14.13539 -13.82617 -13.62841 -13.48234 -13.35601 -12.85618 -12.67964 -12.47304 -12.38494 -12.17831 -11.99438 -11.73850 -11.70704 -11.64694 -11.49496 -11.28628 -10.81594 -9.92455 -9.73876 -9.51195 -9.14792 -8.32838 -6.38184 0.39450 0.62444 1.26620 1.33818 1.35602 1.47672 2.32678 2.94599 3.01205 3.25742 3.61532 3.76306 3.97698 3.99821 4.12811 4.15474 4.20113 4.27540 4.33671 4.39921 4.60420 4.62750 4.66787 4.75422 4.78269 4.84598 4.99170 5.00276 5.03069 5.08824 5.14156 5.24086 5.25930 5.32592 5.49663 5.54125 5.63945 5.65027 5.70737 5.97992 5.99058 6.17309 6.27579 6.52571 6.67610 7.25274 8.83868 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021054 B = 0.004768 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.601875 B = 5871.309737 C = 6495.759173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.521 4.521 8 H 0.026 0.974 9 C 0.021 3.979 10 C -0.063 4.063 11 C -0.139 4.139 12 C -0.114 4.114 13 C -0.128 4.128 14 C -0.058 4.058 15 C -0.074 4.074 16 C -0.147 4.147 17 C 0.096 3.904 18 H 0.120 0.880 19 C -0.145 4.145 20 C -0.152 4.152 21 C 0.067 3.933 22 H 0.109 0.891 23 C -0.063 4.063 24 N -0.652 5.652 25 C -0.125 4.125 26 H 0.268 0.732 27 H 0.027 0.973 28 H 0.030 0.970 29 H 0.118 0.882 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.348 0.652 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.157 -13.860 9.636 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.559 4.559 8 H 0.044 0.956 9 C -0.016 4.016 10 C -0.063 4.063 11 C -0.157 4.157 12 C -0.132 4.132 13 C -0.146 4.146 14 C -0.058 4.058 15 C -0.075 4.075 16 C -0.165 4.165 17 C -0.014 4.014 18 H 0.137 0.863 19 C -0.184 4.184 20 C -0.191 4.191 21 C -0.043 4.043 22 H 0.127 0.873 23 C -0.100 4.100 24 N -0.280 5.280 25 C -0.143 4.143 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.137 0.863 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.164 0.836 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.239 -13.869 8.901 21.779 hybrid contribution -0.914 1.421 0.582 1.787 sum 13.325 -12.448 9.483 20.553 Atomic orbital electron populations 1.70055 1.08284 1.28325 1.52203 1.25979 0.95613 1.03348 0.93852 0.85649 0.79411 0.78096 0.79494 1.18742 1.20609 1.17203 1.21136 0.90745 0.92986 1.50991 0.95607 1.18647 0.94400 0.91192 0.97333 1.20108 0.95342 0.97019 0.93799 1.21239 1.00997 0.96105 0.97383 1.21303 0.98810 0.93915 0.99145 1.21332 1.01725 1.00337 0.91182 1.19232 0.99240 0.92980 0.94396 1.20255 0.98120 0.96636 0.92462 1.23471 0.98160 0.99389 0.95481 1.22476 0.99233 0.87836 0.91840 0.86259 1.23065 0.95407 0.99808 1.00120 1.22902 0.98466 0.97783 0.99958 1.22606 0.88882 0.99326 0.93479 0.87311 1.20392 0.97556 0.94902 0.97178 1.64604 1.12243 1.07684 1.43468 1.21098 1.01262 0.94797 0.97117 0.92282 0.95498 0.95133 0.86346 0.83423 0.84167 0.87195 0.92244 0.89561 0.92649 0.89693 0.90089 0.91939 0.83564 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 2 C 0.01 0.55 5.47 84.66 0.46 1.01 16 3 Si 0.95 44.67 27.47 68.60 1.88 46.55 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 7 C -0.52 -31.15 9.65 25.60 0.25 -30.90 16 8 H 0.03 1.73 7.98 -2.91 -0.02 1.70 16 9 C 0.02 1.07 4.17 29.10 0.12 1.19 16 10 C -0.06 -2.77 5.06 -19.90 -0.10 -2.88 16 11 C -0.14 -5.43 9.69 22.32 0.22 -5.22 16 12 C -0.11 -3.64 10.03 22.23 0.22 -3.42 16 13 C -0.13 -3.96 9.75 22.52 0.22 -3.74 16 14 C -0.06 -1.99 5.19 -20.12 -0.10 -2.10 16 15 C -0.07 -2.12 5.19 -18.57 -0.10 -2.21 16 16 C -0.15 -3.78 8.66 24.88 0.22 -3.56 16 17 C 0.10 1.82 4.71 44.44 0.21 2.03 16 18 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 19 C -0.14 -2.67 6.41 31.79 0.20 -2.47 16 20 C -0.15 -2.86 6.39 31.41 0.20 -2.66 16 21 C 0.07 1.26 4.20 44.92 0.19 1.45 16 22 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 23 C -0.06 -1.54 5.32 29.72 0.16 -1.38 16 24 N -0.65 -11.60 7.24 -453.24 -3.28 -14.88 16 25 C -0.12 -5.07 9.30 22.52 0.21 -4.86 16 26 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 27 H 0.03 1.31 7.14 -2.39 -0.02 1.29 16 28 H 0.03 1.45 7.51 -2.39 -0.02 1.43 16 29 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 30 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.11 2.93 8.04 -2.91 -0.02 2.90 16 33 H 0.06 1.32 7.84 -2.39 -0.02 1.30 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.29 7.70 -2.38 -0.02 1.27 16 36 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.68 7.91 -2.39 -0.02 1.66 16 39 H 0.35 4.46 8.94 -89.69 -0.80 3.66 16 40 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -69.33 322.93 1.64 -67.69 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.16 Total: 20.39 kcal Atomic # 6 Polarization: -62.29 SS G_CDS: 2.57 Total: -59.72 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -2.98 Total: -74.91 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -69.33 1.64 -67.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242021364.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.639 kcal (2) G-P(sol) polarization free energy of solvation -69.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds