Wall clock time and date at job start Mon Mar 30 2020 00:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36176 * 119.94887 * 2 1 4 4 C 1.40967 * 119.90269 * 180.02562 * 3 2 1 5 5 C 1.40931 * 120.09717 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00042 * 24.73520 * 5 4 3 7 7 C 1.40024 * 119.99924 * 204.73999 * 5 4 3 8 8 N 1.30791 * 120.00424 * 17.97097 * 7 5 4 9 9 Si 1.86806 * 120.00227 * 197.97555 * 7 5 4 10 10 H 1.48506 * 109.46818 * 59.99614 * 9 7 5 11 11 H 1.48491 * 109.47511 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46965 * 300.00056 * 9 7 5 13 13 C 1.41011 * 119.80832 * 359.97438 * 4 3 2 14 14 C 1.36137 * 119.89628 * 359.74472 * 13 4 3 15 15 C 1.40158 * 119.95214 * 180.02562 * 2 1 3 16 16 C 1.47285 * 119.90352 * 0.02562 * 15 2 1 17 17 C 1.32350 * 118.53306 * 284.99391 * 16 15 2 18 18 C 1.51624 * 120.22364 * 179.43945 * 17 16 15 19 19 H 1.09003 * 112.93280 * 156.85021 * 18 17 16 20 20 C 1.55157 * 105.89913 * 281.95717 * 18 17 16 21 21 C 1.54819 * 104.27482 * 83.04181 * 20 18 17 22 22 C 1.54043 * 104.87479 * 4.46806 * 21 20 18 23 23 H 1.08998 * 111.81692 * 142.57551 * 22 21 20 24 24 C 1.50257 * 118.53818 * 105.02091 * 16 15 2 25 25 N 1.48524 * 106.97563 * 31.87741 * 18 17 16 26 26 H 1.09001 * 109.47503 * 269.97976 * 1 2 3 27 27 H 1.09004 * 109.47360 * 29.98081 * 1 2 3 28 28 H 1.09004 * 109.47400 * 149.98105 * 1 2 3 29 29 H 1.08001 * 120.04783 * 0.02562 * 3 2 1 30 30 H 0.96996 * 120.00718 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.04646 * 180.02562 * 13 4 3 32 32 H 1.08005 * 119.94874 * 180.26966 * 14 13 4 33 33 H 1.07997 * 119.89342 * 359.16193 * 17 16 15 34 34 H 1.08992 * 110.47800 * 201.99747 * 20 18 17 35 35 H 1.09005 * 110.46818 * 324.61599 * 20 18 17 36 36 H 1.09003 * 110.66224 * 245.51815 * 21 20 18 37 37 H 1.09000 * 110.18452 * 123.18124 * 21 20 18 38 38 H 1.09005 * 109.22977 * 306.67810 * 24 16 15 39 39 H 1.08998 * 109.23253 * 66.08997 * 24 16 15 40 40 H 1.00904 * 110.80270 * 50.97269 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1799 0.0000 4 6 3.5965 1.1788 -0.0005 5 6 4.3042 2.3975 -0.0011 6 1 3.8409 3.2912 0.3902 7 6 5.6080 2.4498 -0.5091 8 7 6.0448 1.4950 -1.2889 9 14 6.7236 3.8832 -0.0730 10 1 6.9099 3.9353 1.3994 11 1 8.0420 3.7028 -0.7321 12 1 6.1060 5.1507 -0.5389 13 6 4.2965 -0.0453 -0.0005 14 6 3.6088 -1.2202 0.0052 15 6 2.2068 -1.2144 -0.0005 16 6 1.4671 -2.4881 -0.0017 17 6 0.8891 -2.8844 1.1210 18 6 0.1073 -4.1830 1.1597 19 1 0.0273 -4.6008 2.1633 20 6 -1.2629 -3.8740 0.5006 21 6 -0.9928 -4.0000 -1.0186 22 6 0.4671 -4.4804 -1.1222 23 1 0.6025 -5.1921 -1.9366 24 6 1.4030 -3.2798 -1.2771 25 7 0.7552 -5.1082 0.1952 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6468 2.1152 0.0004 30 1 6.9481 1.5309 -1.6406 31 1 5.3764 -0.0507 -0.0005 32 1 4.1440 -2.1583 0.0097 33 1 0.9782 -2.2832 2.0137 34 1 -2.0117 -4.5988 0.8200 35 1 -1.5832 -2.8609 0.7440 36 1 -1.1094 -3.0346 -1.5113 37 1 -1.6655 -4.7351 -1.4605 38 1 1.0355 -2.6394 -2.0791 39 1 2.4021 -3.6344 -1.5303 40 1 1.7491 -5.1605 0.3612 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242025569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:40 Heat of formation + Delta-G solvation = 23.311915 kcal Electronic energy + Delta-G solvation = -20352.232430 eV Core-core repulsion = 17516.537072 eV Total energy + Delta-G solvation = -2835.695358 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.19559 -37.75380 -34.34552 -32.40556 -31.32952 -30.94458 -30.13638 -29.06826 -25.83970 -25.25051 -24.16675 -22.03791 -20.50475 -20.12083 -19.90159 -17.84588 -16.95717 -16.35704 -15.30428 -14.72794 -14.52002 -14.10856 -13.77495 -13.72291 -13.08945 -12.80897 -12.62924 -12.51876 -12.29252 -11.97288 -11.90170 -11.66859 -11.55396 -11.31919 -11.06153 -11.03100 -10.90254 -10.66816 -10.56112 -10.40062 -10.23142 -9.69809 -9.49200 -9.18908 -8.46841 -8.07145 -7.46680 -7.19774 -6.83406 -4.39239 2.51836 2.79104 3.02090 3.04664 3.06338 3.16982 3.87284 4.41625 4.51577 4.78944 4.90722 5.14509 5.30938 5.39679 5.49744 5.58110 5.65344 5.83708 5.90309 5.95465 6.00573 6.04025 6.10137 6.13679 6.20096 6.29371 6.33758 6.34857 6.40326 6.58299 6.85463 6.91514 7.00226 7.09512 7.20173 7.33647 7.40672 7.51955 7.61418 7.91464 8.02114 8.09529 8.24643 8.58476 8.82858 8.94210 10.10236 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039109 B = 0.004445 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.784235 B = 6297.050701 C = 6599.347867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.042 4.042 3 C -0.228 4.228 4 C 0.117 3.883 5 C -0.459 4.459 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.787 5.787 9 Si 0.908 3.092 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.265 1.265 13 C -0.171 4.171 14 C -0.081 4.081 15 C -0.204 4.204 16 C -0.018 4.018 17 C -0.220 4.220 18 C 0.098 3.902 19 H 0.099 0.901 20 C -0.111 4.111 21 C -0.116 4.116 22 C 0.064 3.936 23 H 0.090 0.910 24 C -0.111 4.111 25 N -0.658 5.658 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.282 0.718 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.865 -7.765 1.044 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.042 4.042 3 C -0.248 4.248 4 C 0.115 3.885 5 C -0.488 4.488 6 H 0.096 0.904 7 C -0.142 4.142 8 N -0.412 5.412 9 Si 0.732 3.268 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.189 1.189 13 C -0.191 4.191 14 C -0.099 4.099 15 C -0.205 4.205 16 C -0.018 4.018 17 C -0.239 4.239 18 C -0.012 4.012 19 H 0.117 0.883 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.046 4.046 23 H 0.108 0.892 24 C -0.149 4.149 25 N -0.286 5.286 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.167 -8.397 0.870 11.746 hybrid contribution 1.389 1.651 0.051 2.158 sum -6.778 -6.746 0.921 9.608 Atomic orbital electron populations 1.20678 0.93950 1.00730 1.00499 1.19086 0.93342 0.92705 0.99072 1.20515 0.94241 0.95338 1.14684 1.17632 0.90843 0.93167 0.86864 1.19545 0.97740 0.96096 1.35449 0.90417 1.25952 0.98456 0.97269 0.92534 1.69807 1.17913 1.31911 1.21574 0.86366 0.78851 0.81498 0.80042 1.18742 1.20257 1.18921 1.20945 0.99619 0.91463 1.07037 1.20401 0.92554 0.96701 1.00251 1.18021 0.92468 0.90401 1.19606 1.19748 0.95228 0.93933 0.92931 1.23623 1.02796 0.99257 0.98217 1.21959 0.93427 0.89397 0.96412 0.88272 1.22517 0.96321 1.01257 0.94822 1.22319 0.95472 1.00963 0.96680 1.22584 0.94819 0.94164 0.93063 0.89203 1.21171 0.99986 0.96519 0.97270 1.64090 1.17015 1.45385 1.02074 0.92883 0.93161 0.92877 0.89098 0.90692 0.86624 0.89786 0.87552 0.91750 0.91241 0.91283 0.91642 0.90567 0.91071 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.31 36.00 0.34 -1.50 16 2 C -0.04 -0.93 5.87 -104.64 -0.61 -1.54 16 3 C -0.23 -5.60 9.36 -39.29 -0.37 -5.97 16 4 C 0.12 3.12 5.57 -106.79 -0.60 2.53 16 5 C -0.46 -12.12 9.03 -37.89 -0.34 -12.46 16 6 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 7 C 0.08 1.90 5.13 -17.33 -0.09 1.82 16 8 N -0.79 -20.17 10.96 55.55 0.61 -19.56 16 9 Si 0.91 18.43 29.60 -169.99 -5.03 13.40 16 10 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 11 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 12 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 13 C -0.17 -4.44 8.62 -39.29 -0.34 -4.78 16 14 C -0.08 -1.89 9.71 -39.60 -0.38 -2.27 16 15 C -0.20 -4.41 5.14 -104.76 -0.54 -4.95 16 16 C -0.02 -0.31 3.59 -103.09 -0.37 -0.68 16 17 C -0.22 -3.53 8.18 -35.78 -0.29 -3.82 16 18 C 0.10 1.31 4.77 -66.37 -0.32 0.99 16 19 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 20 C -0.11 -1.36 6.42 -24.63 -0.16 -1.52 16 21 C -0.12 -1.42 6.40 -25.23 -0.16 -1.58 16 22 C 0.06 0.83 4.32 -66.13 -0.29 0.55 16 23 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 24 C -0.11 -1.72 5.13 -28.09 -0.14 -1.87 16 25 N -0.66 -8.80 7.42 -96.26 -0.71 -9.51 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.85 8.08 -51.93 -0.42 0.44 16 28 H 0.05 0.90 7.07 -51.93 -0.37 0.53 16 29 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 30 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 31 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 32 H 0.08 1.82 8.06 -52.48 -0.42 1.39 16 33 H 0.11 1.84 8.02 -52.49 -0.42 1.42 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 36 H 0.07 0.87 7.72 -51.93 -0.40 0.47 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.22 7.93 -51.93 -0.41 0.81 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.34 4.55 8.30 -39.29 -0.33 4.22 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -26.61 318.15 -11.01 -37.63 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -6.01 Total: 10.32 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: -4.66 Total: -37.07 kcal Atomic # 7 Polarization: -28.96 SS G_CDS: -0.11 Total: -29.07 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.61 -11.01 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242025569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.941 kcal (2) G-P(sol) polarization free energy of solvation -26.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds