Wall clock time and date at job start Mon Mar 30 2020 00:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36176 * 119.94887 * 2 1 4 4 C 1.40967 * 119.90269 * 180.02562 * 3 2 1 5 5 C 1.40931 * 120.09717 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00042 * 24.73520 * 5 4 3 7 7 C 1.40024 * 119.99924 * 204.73999 * 5 4 3 8 8 N 1.30791 * 120.00424 * 17.97097 * 7 5 4 9 9 Si 1.86806 * 120.00227 * 197.97555 * 7 5 4 10 10 H 1.48506 * 109.46818 * 59.99614 * 9 7 5 11 11 H 1.48491 * 109.47511 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46965 * 300.00056 * 9 7 5 13 13 C 1.41011 * 119.80832 * 359.97438 * 4 3 2 14 14 C 1.36137 * 119.89628 * 359.74472 * 13 4 3 15 15 C 1.40158 * 119.95214 * 180.02562 * 2 1 3 16 16 C 1.47285 * 119.90352 * 0.02562 * 15 2 1 17 17 C 1.32350 * 118.53306 * 284.99391 * 16 15 2 18 18 C 1.51624 * 120.22364 * 179.43945 * 17 16 15 19 19 H 1.09003 * 112.93280 * 156.85021 * 18 17 16 20 20 C 1.55157 * 105.89913 * 281.95717 * 18 17 16 21 21 C 1.54819 * 104.27482 * 83.04181 * 20 18 17 22 22 C 1.54043 * 104.87479 * 4.46806 * 21 20 18 23 23 H 1.08998 * 111.81692 * 142.57551 * 22 21 20 24 24 C 1.50257 * 118.53818 * 105.02091 * 16 15 2 25 25 N 1.48524 * 106.97563 * 31.87741 * 18 17 16 26 26 H 1.09001 * 109.47503 * 269.97976 * 1 2 3 27 27 H 1.09004 * 109.47360 * 29.98081 * 1 2 3 28 28 H 1.09004 * 109.47400 * 149.98105 * 1 2 3 29 29 H 1.08001 * 120.04783 * 0.02562 * 3 2 1 30 30 H 0.96996 * 120.00718 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.04646 * 180.02562 * 13 4 3 32 32 H 1.08005 * 119.94874 * 180.26966 * 14 13 4 33 33 H 1.07997 * 119.89342 * 359.16193 * 17 16 15 34 34 H 1.08992 * 110.47800 * 201.99747 * 20 18 17 35 35 H 1.09005 * 110.46818 * 324.61599 * 20 18 17 36 36 H 1.09003 * 110.66224 * 245.51815 * 21 20 18 37 37 H 1.09000 * 110.18452 * 123.18124 * 21 20 18 38 38 H 1.09005 * 109.22977 * 306.67810 * 24 16 15 39 39 H 1.08998 * 109.23253 * 66.08997 * 24 16 15 40 40 H 1.00904 * 110.80270 * 50.97269 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1799 0.0000 4 6 3.5965 1.1788 -0.0005 5 6 4.3042 2.3975 -0.0011 6 1 3.8409 3.2912 0.3902 7 6 5.6080 2.4498 -0.5091 8 7 6.0448 1.4950 -1.2889 9 14 6.7236 3.8832 -0.0730 10 1 6.9099 3.9353 1.3994 11 1 8.0420 3.7028 -0.7321 12 1 6.1060 5.1507 -0.5389 13 6 4.2965 -0.0453 -0.0005 14 6 3.6088 -1.2202 0.0052 15 6 2.2068 -1.2144 -0.0005 16 6 1.4671 -2.4881 -0.0017 17 6 0.8891 -2.8844 1.1210 18 6 0.1073 -4.1830 1.1597 19 1 0.0273 -4.6008 2.1633 20 6 -1.2629 -3.8740 0.5006 21 6 -0.9928 -4.0000 -1.0186 22 6 0.4671 -4.4804 -1.1222 23 1 0.6025 -5.1921 -1.9366 24 6 1.4030 -3.2798 -1.2771 25 7 0.7552 -5.1082 0.1952 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6468 2.1152 0.0004 30 1 6.9481 1.5309 -1.6406 31 1 5.3764 -0.0507 -0.0005 32 1 4.1440 -2.1583 0.0097 33 1 0.9782 -2.2832 2.0137 34 1 -2.0117 -4.5988 0.8200 35 1 -1.5832 -2.8609 0.7440 36 1 -1.1094 -3.0346 -1.5113 37 1 -1.6655 -4.7351 -1.4605 38 1 1.0355 -2.6394 -2.0791 39 1 2.4021 -3.6344 -1.5303 40 1 1.7491 -5.1605 0.3612 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242025569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:39 Heat of formation + Delta-G solvation = 9.969138 kcal Electronic energy + Delta-G solvation = -20352.811016 eV Core-core repulsion = 17516.537072 eV Total energy + Delta-G solvation = -2836.273944 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38110 -39.50500 -36.11572 -33.94970 -33.02889 -32.11986 -31.29011 -30.68664 -27.57474 -26.94937 -25.35198 -23.48291 -22.24272 -21.59865 -21.11334 -19.07519 -18.83240 -17.70347 -17.07546 -16.02428 -15.82235 -15.61919 -15.45714 -15.09838 -14.60613 -14.37031 -14.03872 -13.78825 -13.67577 -13.60643 -13.30349 -13.14734 -12.92734 -12.72888 -12.65193 -12.53284 -12.16236 -12.10961 -11.99856 -11.65864 -11.51580 -11.37411 -11.32191 -11.02405 -9.73093 -9.42262 -9.27601 -9.03829 -8.69163 -6.36007 0.83895 1.14308 1.29630 1.34978 1.46443 1.52495 2.16808 2.66099 3.35092 3.64226 3.76581 3.90272 4.04465 4.15058 4.23635 4.32130 4.37950 4.42115 4.54452 4.65846 4.73617 4.80940 4.87268 4.87445 4.90202 5.02225 5.09227 5.10297 5.12378 5.14363 5.24468 5.30283 5.34187 5.47932 5.64317 5.72892 5.83431 6.04586 6.09664 6.13578 6.22926 6.35054 6.38932 6.66328 6.88930 7.02128 8.27114 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039109 B = 0.004445 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.784235 B = 6297.050701 C = 6599.347867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.050 4.050 3 C -0.247 4.247 4 C 0.085 3.915 5 C -0.500 4.500 6 H 0.075 0.925 7 C 0.036 3.964 8 N -0.821 5.821 9 Si 0.983 3.017 10 H -0.261 1.261 11 H -0.266 1.266 12 H -0.258 1.258 13 C -0.196 4.196 14 C -0.090 4.090 15 C -0.192 4.192 16 C -0.041 4.041 17 C -0.196 4.196 18 C 0.099 3.901 19 H 0.116 0.884 20 C -0.109 4.109 21 C -0.117 4.117 22 C 0.069 3.931 23 H 0.106 0.894 24 C -0.105 4.105 25 N -0.655 5.655 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.289 0.711 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 -9.095 1.328 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C -0.266 4.266 4 C 0.082 3.918 5 C -0.529 4.529 6 H 0.093 0.907 7 C -0.179 4.179 8 N -0.447 5.447 9 Si 0.803 3.197 10 H -0.185 1.185 11 H -0.190 1.190 12 H -0.182 1.182 13 C -0.215 4.215 14 C -0.109 4.109 15 C -0.193 4.193 16 C -0.041 4.041 17 C -0.215 4.215 18 C -0.010 4.010 19 H 0.134 0.866 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.041 4.041 23 H 0.124 0.876 24 C -0.144 4.144 25 N -0.282 5.282 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.879 -9.744 1.152 13.923 hybrid contribution 1.812 1.936 0.003 2.652 sum -8.067 -7.807 1.155 11.285 Atomic orbital electron populations 1.20654 0.90670 1.01905 1.01788 1.19583 0.95852 0.92019 0.97539 1.20724 0.93829 0.96598 1.15498 1.17979 0.92076 0.93667 0.88035 1.19785 0.99442 0.96158 1.37466 0.90682 1.26806 0.99284 1.00147 0.91699 1.69863 1.18620 1.33847 1.22351 0.85250 0.76937 0.77851 0.79677 1.18509 1.18982 1.18203 1.20891 0.98952 0.92473 1.09224 1.20651 0.93851 0.96390 0.99987 1.18476 0.92039 0.92457 1.16345 1.19633 0.96663 0.93051 0.94781 1.23790 1.00997 0.99954 0.96798 1.22112 0.93666 0.87690 0.97583 0.86618 1.22529 0.95774 1.01773 0.94609 1.22356 0.94987 1.01315 0.96803 1.22629 0.94806 0.93206 0.93480 0.87613 1.21119 1.00410 0.97170 0.95657 1.64134 1.17014 1.44902 1.02114 0.91352 0.92244 0.91440 0.88873 0.90009 0.88475 0.88518 0.88833 0.89810 0.91450 0.91758 0.89733 0.91395 0.91838 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.21 9.31 71.24 0.66 -2.55 16 2 C -0.05 -2.21 5.87 -19.88 -0.12 -2.32 16 3 C -0.25 -12.51 9.36 22.46 0.21 -12.30 16 4 C 0.08 4.73 5.57 -21.27 -0.12 4.61 16 5 C -0.50 -27.64 9.03 23.36 0.21 -27.43 16 6 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 7 C 0.04 1.86 5.13 85.28 0.44 2.29 16 8 N -0.82 -43.79 10.96 21.84 0.24 -43.55 16 9 Si 0.98 38.62 29.60 68.60 2.03 40.65 16 10 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 11 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 12 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 13 C -0.20 -10.69 8.62 22.46 0.19 -10.50 16 14 C -0.09 -4.36 9.71 22.26 0.22 -4.14 16 15 C -0.19 -8.33 5.14 -19.95 -0.10 -8.43 16 16 C -0.04 -1.37 3.59 -18.71 -0.07 -1.44 16 17 C -0.20 -5.86 8.18 24.89 0.20 -5.66 16 18 C 0.10 2.32 4.77 44.89 0.21 2.53 16 19 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 20 C -0.11 -2.24 6.42 31.95 0.21 -2.03 16 21 C -0.12 -2.42 6.40 31.57 0.20 -2.21 16 22 C 0.07 1.59 4.32 44.92 0.19 1.78 16 23 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 24 C -0.11 -3.09 5.13 29.72 0.15 -2.94 16 25 N -0.65 -15.37 7.42 -458.44 -3.40 -18.77 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 28 H 0.07 2.12 7.07 -2.38 -0.02 2.10 16 29 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 30 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 31 H 0.10 5.54 6.16 -2.91 -0.02 5.53 16 32 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.09 3.06 8.02 -2.91 -0.02 3.04 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.43 7.86 -2.38 -0.02 1.41 16 36 H 0.06 1.41 7.72 -2.39 -0.02 1.39 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 2.09 7.93 -2.38 -0.02 2.07 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.34 8.18 8.30 -89.69 -0.74 7.44 16 Total: -1.00 -59.60 318.15 1.85 -57.75 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.29 Total: 34.67 kcal Atomic # 6 Polarization: -73.44 SS G_CDS: 2.70 Total: -70.74 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -3.16 Total: -62.32 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -59.60 1.85 -57.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242025569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.716 kcal (2) G-P(sol) polarization free energy of solvation -59.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds